Experiment: 5-Hydroxymethylfurfural 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0756 and Psest_0757 are separated by 42 nucleotides Psest_0757 and Psest_0758 are separated by 114 nucleotides Psest_0758 and Psest_0759 are separated by 60 nucleotides
Psest_0756: Psest_0756 - alkylhydroperoxidase AhpD family core domain, at 827,193 to 827,651
_0756
Psest_0757: Psest_0757 - hypothetical protein, at 827,694 to 828,167
_0757
Psest_0758: Psest_0758 - Lactoylglutathione lyase and related lyases, at 828,282 to 828,671
_0758
Psest_0759: Psest_0759 - Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)., at 828,732 to 829,478
_0759
Position (kb) 828
829 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 827.409 kb on + strand, within Psest_0756 at 827.409 kb on + strand, within Psest_0756 at 827.409 kb on + strand, within Psest_0756 at 827.409 kb on + strand, within Psest_0756 at 827.409 kb on + strand, within Psest_0756 at 827.409 kb on + strand, within Psest_0756 at 827.409 kb on + strand, within Psest_0756 at 827.410 kb on - strand, within Psest_0756 at 827.410 kb on - strand, within Psest_0756 at 827.410 kb on - strand, within Psest_0756 at 827.410 kb on - strand, within Psest_0756 at 827.410 kb on - strand, within Psest_0756 at 827.410 kb on - strand, within Psest_0756 at 827.410 kb on - strand, within Psest_0756 at 827.410 kb on - strand, within Psest_0756 at 827.637 kb on + strand at 827.637 kb on + strand at 827.638 kb on - strand at 827.840 kb on - strand, within Psest_0757 at 827.852 kb on - strand, within Psest_0757 at 827.912 kb on + strand, within Psest_0757 at 828.016 kb on - strand, within Psest_0757 at 828.094 kb on + strand, within Psest_0757 at 828.095 kb on - strand, within Psest_0757 at 828.095 kb on - strand, within Psest_0757 at 828.095 kb on - strand, within Psest_0757 at 828.095 kb on - strand, within Psest_0757 at 828.355 kb on + strand, within Psest_0758 at 828.356 kb on - strand, within Psest_0758 at 828.356 kb on - strand, within Psest_0758 at 828.356 kb on - strand, within Psest_0758 at 828.547 kb on + strand, within Psest_0758 at 828.547 kb on + strand, within Psest_0758 at 828.548 kb on - strand, within Psest_0758 at 828.548 kb on - strand, within Psest_0758 at 828.548 kb on - strand, within Psest_0758 at 828.548 kb on - strand, within Psest_0758 at 828.607 kb on + strand, within Psest_0758 at 828.607 kb on + strand, within Psest_0758 at 828.607 kb on + strand, within Psest_0758 at 828.607 kb on + strand, within Psest_0758 at 828.608 kb on - strand, within Psest_0758 at 828.608 kb on - strand, within Psest_0758 at 828.608 kb on - strand, within Psest_0758 at 828.608 kb on - strand, within Psest_0758 at 828.608 kb on - strand, within Psest_0758 at 828.608 kb on - strand, within Psest_0758 at 828.629 kb on - strand, within Psest_0758 at 828.629 kb on - strand, within Psest_0758 at 828.629 kb on - strand, within Psest_0758 at 828.663 kb on + strand at 828.663 kb on + strand at 828.663 kb on + strand at 828.664 kb on - strand at 828.664 kb on - strand at 828.693 kb on - strand at 828.765 kb on + strand at 828.765 kb on + strand at 828.765 kb on + strand at 828.765 kb on + strand at 828.765 kb on + strand at 828.765 kb on + strand at 828.766 kb on - strand at 828.769 kb on + strand at 828.769 kb on + strand at 828.769 kb on + strand at 828.769 kb on + strand at 828.770 kb on - strand at 828.770 kb on - strand at 828.770 kb on - strand at 828.779 kb on + strand at 828.781 kb on + strand at 828.781 kb on + strand at 828.781 kb on + strand at 828.781 kb on + strand at 828.781 kb on + strand at 828.781 kb on + strand at 828.781 kb on + strand at 828.781 kb on + strand at 828.781 kb on + strand at 828.781 kb on + strand at 828.781 kb on + strand at 828.781 kb on + strand at 828.781 kb on + strand at 828.781 kb on + strand at 828.781 kb on + strand at 828.781 kb on + strand at 828.781 kb on + strand at 828.781 kb on + strand at 828.782 kb on - strand at 828.782 kb on - strand at 828.782 kb on - strand at 828.782 kb on - strand at 828.782 kb on - strand at 828.791 kb on - strand at 828.943 kb on + strand, within Psest_0759 at 829.042 kb on - strand, within Psest_0759 at 829.400 kb on + strand, within Psest_0759 at 829.600 kb on + strand at 829.601 kb on - strand at 829.601 kb on - strand at 829.601 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 5-Hydroxymethylfurfural 5 mM remove 827,409 + Psest_0756 0.47 -0.5 827,409 + Psest_0756 0.47 -0.4 827,409 + Psest_0756 0.47 -0.9 827,409 + Psest_0756 0.47 -0.4 827,409 + Psest_0756 0.47 -2.2 827,409 + Psest_0756 0.47 -1.8 827,409 + Psest_0756 0.47 -0.5 827,410 - Psest_0756 0.47 +0.0 827,410 - Psest_0756 0.47 -0.2 827,410 - Psest_0756 0.47 +3.8 827,410 - Psest_0756 0.47 +0.9 827,410 - Psest_0756 0.47 +0.9 827,410 - Psest_0756 0.47 -0.1 827,410 - Psest_0756 0.47 +2.3 827,410 - Psest_0756 0.47 -1.4 827,637 + -0.3 827,637 + +1.0 827,638 - -0.4 827,840 - Psest_0757 0.31 +1.3 827,852 - Psest_0757 0.33 -0.9 827,912 + Psest_0757 0.46 -0.0 828,016 - Psest_0757 0.68 -3.5 828,094 + Psest_0757 0.84 -0.8 828,095 - Psest_0757 0.85 -1.0 828,095 - Psest_0757 0.85 -0.2 828,095 - Psest_0757 0.85 -0.5 828,095 - Psest_0757 0.85 +0.7 828,355 + Psest_0758 0.19 +0.9 828,356 - Psest_0758 0.19 -0.1 828,356 - Psest_0758 0.19 +0.8 828,356 - Psest_0758 0.19 +0.9 828,547 + Psest_0758 0.68 +0.0 828,547 + Psest_0758 0.68 -1.3 828,548 - Psest_0758 0.68 -2.6 828,548 - Psest_0758 0.68 +0.6 828,548 - Psest_0758 0.68 +1.2 828,548 - Psest_0758 0.68 +1.2 828,607 + Psest_0758 0.83 +2.1 828,607 + Psest_0758 0.83 +0.1 828,607 + Psest_0758 0.83 +0.2 828,607 + Psest_0758 0.83 -1.6 828,608 - Psest_0758 0.84 +2.5 828,608 - Psest_0758 0.84 -0.4 828,608 - Psest_0758 0.84 -1.6 828,608 - Psest_0758 0.84 -0.3 828,608 - Psest_0758 0.84 -0.3 828,608 - Psest_0758 0.84 +0.7 828,629 - Psest_0758 0.89 -2.4 828,629 - Psest_0758 0.89 +0.2 828,629 - Psest_0758 0.89 +0.6 828,663 + +2.6 828,663 + -1.5 828,663 + +0.3 828,664 - +1.3 828,664 - +1.9 828,693 - +0.7 828,765 + -0.4 828,765 + -0.3 828,765 + +1.5 828,765 + -0.3 828,765 + -1.1 828,765 + +1.0 828,766 - -2.6 828,769 + -0.4 828,769 + +0.3 828,769 + +0.6 828,769 + +0.6 828,770 - -0.0 828,770 - +1.3 828,770 - -0.3 828,779 + -0.1 828,781 + -0.6 828,781 + +0.9 828,781 + +1.5 828,781 + -0.8 828,781 + -1.6 828,781 + -3.2 828,781 + -0.8 828,781 + -0.6 828,781 + -0.5 828,781 + -0.3 828,781 + +1.4 828,781 + +1.6 828,781 + -0.5 828,781 + +1.4 828,781 + +0.7 828,781 + +1.1 828,781 + -2.3 828,781 + +1.3 828,782 - -2.8 828,782 - -0.3 828,782 - +0.9 828,782 - -0.8 828,782 - -0.2 828,791 - +2.6 828,943 + Psest_0759 0.28 -0.2 829,042 - Psest_0759 0.41 -1.7 829,400 + Psest_0759 0.89 -1.5 829,600 + +0.2 829,601 - +0.7 829,601 - -0.6 829,601 - +0.8
Or see this region's nucleotide sequence