Experiment: 5-Hydroxymethylfurfural 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0653 and Psest_0654 are separated by 19 nucleotides Psest_0654 and Psest_0655 are separated by 1 nucleotides Psest_0655 and Psest_0656 are separated by 11 nucleotides
Psest_0653: Psest_0653 - Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain, at 710,106 to 711,161
_0653
Psest_0654: Psest_0654 - Methylase of chemotaxis methyl-accepting proteins, at 711,181 to 711,987
_0654
Psest_0655: Psest_0655 - Chemotaxis signal transduction protein, at 711,989 to 712,486
_0655
Psest_0656: Psest_0656 - Methyl-accepting chemotaxis protein, at 712,498 to 714,144
_0656
Position (kb) 711
712
713 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 711.114 kb on + strand at 711.115 kb on - strand at 711.170 kb on - strand at 711.184 kb on + strand at 711.332 kb on + strand, within Psest_0654 at 711.332 kb on + strand, within Psest_0654 at 711.333 kb on - strand, within Psest_0654 at 711.333 kb on - strand, within Psest_0654 at 711.333 kb on - strand, within Psest_0654 at 711.559 kb on + strand, within Psest_0654 at 711.559 kb on + strand, within Psest_0654 at 711.635 kb on + strand, within Psest_0654 at 711.635 kb on + strand, within Psest_0654 at 711.636 kb on - strand, within Psest_0654 at 711.636 kb on - strand, within Psest_0654 at 711.636 kb on - strand, within Psest_0654 at 711.743 kb on + strand, within Psest_0654 at 711.743 kb on + strand, within Psest_0654 at 711.744 kb on - strand, within Psest_0654 at 711.817 kb on + strand, within Psest_0654 at 711.817 kb on + strand, within Psest_0654 at 711.817 kb on + strand, within Psest_0654 at 711.818 kb on - strand, within Psest_0654 at 711.818 kb on - strand, within Psest_0654 at 711.818 kb on - strand, within Psest_0654 at 711.818 kb on - strand, within Psest_0654 at 711.818 kb on - strand, within Psest_0654 at 711.821 kb on + strand, within Psest_0654 at 711.821 kb on + strand, within Psest_0654 at 711.821 kb on + strand, within Psest_0654 at 711.822 kb on - strand, within Psest_0654 at 711.831 kb on - strand, within Psest_0654 at 712.419 kb on + strand, within Psest_0655 at 712.419 kb on + strand, within Psest_0655 at 712.607 kb on - strand at 712.957 kb on + strand, within Psest_0656 at 712.958 kb on - strand, within Psest_0656 at 712.958 kb on - strand, within Psest_0656
Per-strain Table
Position Strand Gene LocusTag Fraction 5-Hydroxymethylfurfural 5 mM remove 711,114 + +0.6 711,115 - -3.1 711,170 - +0.7 711,184 + -0.5 711,332 + Psest_0654 0.19 +0.2 711,332 + Psest_0654 0.19 +1.0 711,333 - Psest_0654 0.19 +2.3 711,333 - Psest_0654 0.19 +0.1 711,333 - Psest_0654 0.19 +2.5 711,559 + Psest_0654 0.47 +0.9 711,559 + Psest_0654 0.47 -1.4 711,635 + Psest_0654 0.56 +0.3 711,635 + Psest_0654 0.56 -0.1 711,636 - Psest_0654 0.56 +0.1 711,636 - Psest_0654 0.56 -1.8 711,636 - Psest_0654 0.56 -0.6 711,743 + Psest_0654 0.70 +0.8 711,743 + Psest_0654 0.70 -0.6 711,744 - Psest_0654 0.70 +1.0 711,817 + Psest_0654 0.79 +0.4 711,817 + Psest_0654 0.79 +0.7 711,817 + Psest_0654 0.79 -0.3 711,818 - Psest_0654 0.79 +1.5 711,818 - Psest_0654 0.79 -0.5 711,818 - Psest_0654 0.79 -0.0 711,818 - Psest_0654 0.79 +0.8 711,818 - Psest_0654 0.79 -2.1 711,821 + Psest_0654 0.79 -0.5 711,821 + Psest_0654 0.79 +0.6 711,821 + Psest_0654 0.79 +1.3 711,822 - Psest_0654 0.79 -0.6 711,831 - Psest_0654 0.81 -0.6 712,419 + Psest_0655 0.86 -1.1 712,419 + Psest_0655 0.86 -0.7 712,607 - -0.5 712,957 + Psest_0656 0.28 -0.1 712,958 - Psest_0656 0.28 -2.7 712,958 - Psest_0656 0.28 +0.7
Or see this region's nucleotide sequence