Experiment: 5-Hydroxymethylfurfural 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_4146 and Psest_4147 are separated by 12 nucleotides Psest_4147 and Psest_4148 overlap by 1 nucleotides Psest_4148 and Psest_4149 are separated by 14 nucleotides
Psest_4146: Psest_4146 - Flagellar basal-body P-ring protein, at 4,329,837 to 4,330,949
_4146
Psest_4147: Psest_4147 - Flagellar basal body L-ring protein, at 4,330,962 to 4,331,630
_4147
Psest_4148: Psest_4148 - flagellar basal-body rod protein FlgG, Gram-negative bacteria, at 4,331,630 to 4,332,415
_4148
Psest_4149: Psest_4149 - fagellar hook-basal body proteins, at 4,332,430 to 4,333,158
_4149
Position (kb) 4330
4331
4332 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 4330.312 kb on + strand, within Psest_4146 at 4330.312 kb on + strand, within Psest_4146 at 4330.313 kb on - strand, within Psest_4146 at 4330.313 kb on - strand, within Psest_4146 at 4330.313 kb on - strand, within Psest_4146 at 4330.534 kb on + strand, within Psest_4146 at 4330.534 kb on + strand, within Psest_4146 at 4330.535 kb on - strand, within Psest_4146 at 4330.535 kb on - strand, within Psest_4146 at 4330.645 kb on + strand, within Psest_4146 at 4330.646 kb on - strand, within Psest_4146 at 4330.646 kb on - strand, within Psest_4146 at 4330.646 kb on - strand, within Psest_4146 at 4331.089 kb on + strand, within Psest_4147 at 4331.134 kb on + strand, within Psest_4147 at 4331.134 kb on + strand, within Psest_4147 at 4331.134 kb on + strand, within Psest_4147 at 4331.135 kb on - strand, within Psest_4147 at 4331.135 kb on - strand, within Psest_4147 at 4331.135 kb on - strand, within Psest_4147 at 4331.135 kb on - strand, within Psest_4147 at 4331.135 kb on - strand, within Psest_4147 at 4331.513 kb on - strand, within Psest_4147 at 4331.513 kb on - strand, within Psest_4147 at 4331.534 kb on - strand, within Psest_4147 at 4331.534 kb on - strand, within Psest_4147 at 4331.534 kb on - strand, within Psest_4147 at 4331.697 kb on + strand at 4332.075 kb on + strand, within Psest_4148 at 4332.075 kb on + strand, within Psest_4148 at 4332.075 kb on + strand, within Psest_4148 at 4332.075 kb on + strand, within Psest_4148 at 4332.076 kb on - strand, within Psest_4148 at 4332.076 kb on - strand, within Psest_4148 at 4332.279 kb on + strand, within Psest_4148 at 4332.279 kb on + strand, within Psest_4148 at 4332.279 kb on + strand, within Psest_4148 at 4332.279 kb on + strand, within Psest_4148 at 4332.280 kb on - strand, within Psest_4148 at 4332.280 kb on - strand, within Psest_4148 at 4332.280 kb on - strand, within Psest_4148 at 4332.420 kb on + strand at 4332.420 kb on + strand at 4332.494 kb on - strand at 4332.589 kb on + strand, within Psest_4149 at 4332.589 kb on + strand, within Psest_4149 at 4332.589 kb on + strand, within Psest_4149
Per-strain Table
Position Strand Gene LocusTag Fraction 5-Hydroxymethylfurfural 5 mM remove 4,330,312 + Psest_4146 0.43 +0.2 4,330,312 + Psest_4146 0.43 -0.5 4,330,313 - Psest_4146 0.43 +0.0 4,330,313 - Psest_4146 0.43 +0.6 4,330,313 - Psest_4146 0.43 -0.7 4,330,534 + Psest_4146 0.63 +0.7 4,330,534 + Psest_4146 0.63 -0.9 4,330,535 - Psest_4146 0.63 +0.8 4,330,535 - Psest_4146 0.63 -1.0 4,330,645 + Psest_4146 0.73 -0.5 4,330,646 - Psest_4146 0.73 +2.3 4,330,646 - Psest_4146 0.73 -0.6 4,330,646 - Psest_4146 0.73 -0.8 4,331,089 + Psest_4147 0.19 +1.6 4,331,134 + Psest_4147 0.26 +2.2 4,331,134 + Psest_4147 0.26 +1.1 4,331,134 + Psest_4147 0.26 +0.1 4,331,135 - Psest_4147 0.26 -1.4 4,331,135 - Psest_4147 0.26 +2.6 4,331,135 - Psest_4147 0.26 +1.0 4,331,135 - Psest_4147 0.26 +3.9 4,331,135 - Psest_4147 0.26 -0.6 4,331,513 - Psest_4147 0.82 +1.1 4,331,513 - Psest_4147 0.82 +1.6 4,331,534 - Psest_4147 0.86 +1.7 4,331,534 - Psest_4147 0.86 +0.7 4,331,534 - Psest_4147 0.86 +0.6 4,331,697 + -1.5 4,332,075 + Psest_4148 0.57 +0.7 4,332,075 + Psest_4148 0.57 -1.6 4,332,075 + Psest_4148 0.57 -0.9 4,332,075 + Psest_4148 0.57 +2.0 4,332,076 - Psest_4148 0.57 +3.3 4,332,076 - Psest_4148 0.57 +1.2 4,332,279 + Psest_4148 0.83 +1.0 4,332,279 + Psest_4148 0.83 -1.7 4,332,279 + Psest_4148 0.83 +0.7 4,332,279 + Psest_4148 0.83 -0.3 4,332,280 - Psest_4148 0.83 +0.7 4,332,280 - Psest_4148 0.83 -2.3 4,332,280 - Psest_4148 0.83 +0.1 4,332,420 + +1.3 4,332,420 + +0.3 4,332,494 - +0.5 4,332,589 + Psest_4149 0.22 +0.0 4,332,589 + Psest_4149 0.22 +0.3 4,332,589 + Psest_4149 0.22 -1.6
Or see this region's nucleotide sequence