Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3968

Experiment: 5-Hydroxymethylfurfural 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	5-Hydroxymethylfurfural 5 mM
4,134,153	+		Psest_3967	0.17	-0.1
4,134,213	+		Psest_3967	0.22	-1.5
4,134,214	-		Psest_3967	0.22	+0.3
4,134,290	-		Psest_3967	0.29	+0.6
4,134,312	+		Psest_3967	0.31	+1.3
4,134,313	-		Psest_3967	0.31	+1.0
4,134,507	+		Psest_3967	0.48	-2.4
4,134,507	+		Psest_3967	0.48	-0.8
4,134,508	-		Psest_3967	0.48	+1.5
4,134,623	+		Psest_3967	0.57	+1.6
4,134,750	+		Psest_3967	0.68	+0.2
4,134,750	+		Psest_3967	0.68	-0.3
4,134,751	-		Psest_3967	0.68	-1.2
4,134,751	-		Psest_3967	0.68	+0.5
4,134,914	+		Psest_3967	0.82	-1.1
4,134,924	+		Psest_3967	0.83	-0.5
4,134,924	+		Psest_3967	0.83	-0.2
4,134,924	+		Psest_3967	0.83	+0.4
4,134,924	+		Psest_3967	0.83	+0.4
4,134,925	-		Psest_3967	0.83	-0.5
4,134,925	-		Psest_3967	0.83	+0.7
4,134,925	-		Psest_3967	0.83	+0.1
4,134,991	+		Psest_3967	0.89	-1.5
4,135,043	+				-0.2
4,135,043	+				+0.2
4,135,043	+				-0.7
4,135,044	-				+1.2
4,135,044	-				+0.7
4,135,243	+				-2.0
4,135,243	+				-0.5
4,135,244	-				-1.2
4,135,273	+				-0.1
4,135,273	+				+0.5
4,135,274	-				-0.4
4,135,274	-				-0.9
4,135,357	+		Psest_3968	0.12	+1.4
4,135,357	+		Psest_3968	0.12	-0.0
4,135,357	+		Psest_3968	0.12	+0.9
4,135,357	+		Psest_3968	0.12	+1.6
4,135,357	+		Psest_3968	0.12	+0.2
4,135,358	-		Psest_3968	0.12	-1.3
4,135,358	-		Psest_3968	0.12	-0.8
4,135,358	-		Psest_3968	0.12	-0.8
4,135,358	-		Psest_3968	0.12	+1.4
4,135,358	-		Psest_3968	0.12	+1.6
4,135,358	-		Psest_3968	0.12	+0.4
4,135,591	+		Psest_3968	0.25	-0.9
4,135,591	+		Psest_3968	0.25	+2.4
4,135,592	-		Psest_3968	0.25	-1.2
4,135,592	-		Psest_3968	0.25	+0.8
4,135,592	-		Psest_3968	0.25	+0.7
4,135,592	-		Psest_3968	0.25	+0.1
4,135,681	+		Psest_3968	0.30	+1.8
4,135,681	+		Psest_3968	0.30	-1.1
4,135,681	+		Psest_3968	0.30	-0.2
4,135,681	+		Psest_3968	0.30	+0.7
4,135,682	-		Psest_3968	0.30	-0.7
4,135,682	-		Psest_3968	0.30	-0.7
4,135,872	+		Psest_3968	0.41	-0.2
4,135,872	+		Psest_3968	0.41	-2.4
4,135,873	-		Psest_3968	0.41	+1.5
4,136,330	+		Psest_3968	0.66	+0.3
4,136,331	-		Psest_3968	0.66	-0.6
4,136,377	+		Psest_3968	0.69	-0.4
4,136,378	-		Psest_3968	0.69	-2.8
4,136,378	-		Psest_3968	0.69	+1.0
4,136,378	-		Psest_3968	0.69	+1.9
4,136,378	-		Psest_3968	0.69	-1.0
4,136,378	-		Psest_3968	0.69	+0.6
4,136,490	+		Psest_3968	0.75	-0.2
4,136,490	+		Psest_3968	0.75	-0.2
4,136,490	+		Psest_3968	0.75	+0.8
4,136,490	+		Psest_3968	0.75	-0.1
4,136,490	+		Psest_3968	0.75	-1.4
4,136,491	-		Psest_3968	0.75	-1.1
4,136,491	-		Psest_3968	0.75	+2.6
4,136,491	-		Psest_3968	0.75	+2.2
4,136,495	-		Psest_3968	0.75	-1.3
4,136,527	+		Psest_3968	0.77	-0.5
4,136,527	+		Psest_3968	0.77	+2.0
4,136,527	+		Psest_3968	0.77	-1.3
4,136,527	+		Psest_3968	0.77	-1.3
4,136,527	+		Psest_3968	0.77	+0.3
4,136,527	+		Psest_3968	0.77	+0.3
4,136,528	-		Psest_3968	0.77	+0.2
4,136,563	+		Psest_3968	0.79	+3.0
4,136,563	+		Psest_3968	0.79	-0.3
4,136,564	-		Psest_3968	0.79	+0.1
4,136,564	-		Psest_3968	0.79	+1.5
4,136,686	+		Psest_3968	0.86	+2.7
4,136,687	-		Psest_3968	0.86	+0.4
4,136,687	-		Psest_3968	0.86	+3.1
4,136,696	-		Psest_3968	0.87	+0.4
4,136,696	-		Psest_3968	0.87	+1.1
4,136,797	+				+1.0
4,136,883	+				+0.5
4,136,884	-				-0.0
4,136,884	-				+0.9
4,136,884	-				+2.9
4,136,884	-				+0.2
4,136,884	-				+1.2
4,136,884	-				+0.5
4,136,926	+				-2.0
4,136,927	-				+0.8
4,136,927	-				-0.4
4,136,927	-				+1.6
4,136,927	-				+0.2
4,136,927	-				-0.9
4,136,927	-				-0.2
4,137,129	+		Psest_3969	0.16	+1.0
4,137,129	+		Psest_3969	0.16	-0.7
4,137,130	-		Psest_3969	0.16	-0.0
4,137,130	-		Psest_3969	0.16	+3.0
4,137,336	+		Psest_3969	0.32	-0.0
4,137,337	-		Psest_3969	0.32	+0.6
4,137,337	-		Psest_3969	0.32	+0.4
4,137,471	+		Psest_3969	0.43	-0.5
4,137,471	+		Psest_3969	0.43	+1.3
4,137,471	+		Psest_3969	0.43	-1.0
4,137,472	-		Psest_3969	0.43	-1.1
4,137,472	-		Psest_3969	0.43	+0.3
4,137,472	-		Psest_3969	0.43	-0.8
4,137,472	-		Psest_3969	0.43	+0.7
4,137,472	-		Psest_3969	0.43	-0.8
4,137,472	-		Psest_3969	0.43	-0.8
4,137,472	-		Psest_3969	0.43	+0.2
4,137,573	+		Psest_3969	0.51	+1.7
4,137,573	+		Psest_3969	0.51	-1.0
4,137,573	+		Psest_3969	0.51	+0.2
4,137,573	+		Psest_3969	0.51	-0.6
4,137,573	+		Psest_3969	0.51	+0.5
4,137,573	+		Psest_3969	0.51	+1.3
4,137,573	+		Psest_3969	0.51	+0.4
4,137,574	-		Psest_3969	0.51	+2.2
4,137,574	-		Psest_3969	0.51	+1.9
4,137,574	-		Psest_3969	0.51	-2.0
4,137,574	-		Psest_3969	0.51	+0.8
4,137,574	-		Psest_3969	0.51	-2.2
4,137,574	-		Psest_3969	0.51	-1.5
4,137,574	-		Psest_3969	0.51	+1.5
4,137,574	-		Psest_3969	0.51	-0.1
4,137,574	-		Psest_3969	0.51	+1.2
4,137,931	-		Psest_3969	0.80	-0.4