Experiment: 5-Hydroxymethylfurfural 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0373 and Psest_0374 are separated by 450 nucleotides Psest_0374 and Psest_0375 are separated by 70 nucleotides
Psest_0373: Psest_0373 - L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily, at 399,248 to 400,639
_0373
Psest_0374: Psest_0374 - 5-dehydro-4-deoxyglucarate dehydratase, at 401,090 to 402,001
_0374
Psest_0375: Psest_0375 - NAD-dependent aldehyde dehydrogenases, at 402,072 to 403,514
_0375
Position (kb) 401
402
403 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 400.099 kb on - strand, within Psest_0373 at 400.099 kb on - strand, within Psest_0373 at 400.127 kb on + strand, within Psest_0373 at 400.127 kb on + strand, within Psest_0373 at 400.127 kb on + strand, within Psest_0373 at 400.127 kb on + strand, within Psest_0373 at 400.127 kb on + strand, within Psest_0373 at 400.127 kb on + strand, within Psest_0373 at 400.127 kb on + strand, within Psest_0373 at 400.127 kb on + strand, within Psest_0373 at 400.127 kb on + strand, within Psest_0373 at 400.127 kb on + strand, within Psest_0373 at 400.127 kb on + strand, within Psest_0373 at 400.127 kb on + strand, within Psest_0373 at 400.127 kb on + strand, within Psest_0373 at 400.127 kb on + strand, within Psest_0373 at 400.127 kb on + strand, within Psest_0373 at 400.128 kb on - strand, within Psest_0373 at 400.128 kb on - strand, within Psest_0373 at 400.128 kb on - strand, within Psest_0373 at 400.128 kb on - strand, within Psest_0373 at 400.128 kb on - strand, within Psest_0373 at 400.128 kb on - strand, within Psest_0373 at 400.128 kb on - strand, within Psest_0373 at 400.128 kb on - strand, within Psest_0373 at 400.128 kb on - strand, within Psest_0373 at 400.128 kb on - strand, within Psest_0373 at 400.128 kb on - strand, within Psest_0373 at 400.128 kb on - strand, within Psest_0373 at 400.128 kb on - strand, within Psest_0373 at 400.128 kb on - strand, within Psest_0373 at 400.128 kb on - strand, within Psest_0373 at 400.128 kb on - strand, within Psest_0373 at 400.128 kb on - strand, within Psest_0373 at 400.128 kb on - strand, within Psest_0373 at 400.128 kb on - strand, within Psest_0373 at 400.128 kb on - strand, within Psest_0373 at 400.128 kb on - strand, within Psest_0373 at 400.128 kb on - strand, within Psest_0373 at 400.128 kb on - strand, within Psest_0373 at 400.128 kb on - strand, within Psest_0373 at 400.128 kb on - strand, within Psest_0373 at 400.128 kb on - strand, within Psest_0373 at 400.128 kb on - strand, within Psest_0373 at 400.128 kb on - strand, within Psest_0373 at 400.128 kb on - strand, within Psest_0373 at 400.128 kb on - strand, within Psest_0373 at 400.128 kb on - strand, within Psest_0373 at 400.128 kb on - strand, within Psest_0373 at 400.128 kb on - strand, within Psest_0373 at 400.129 kb on + strand, within Psest_0373 at 400.131 kb on + strand, within Psest_0373 at 400.131 kb on + strand, within Psest_0373 at 400.131 kb on + strand, within Psest_0373 at 400.131 kb on + strand, within Psest_0373 at 400.131 kb on + strand, within Psest_0373 at 400.131 kb on + strand, within Psest_0373 at 400.131 kb on + strand, within Psest_0373 at 400.131 kb on + strand, within Psest_0373 at 400.131 kb on + strand, within Psest_0373 at 400.131 kb on + strand, within Psest_0373 at 400.131 kb on + strand, within Psest_0373 at 400.131 kb on + strand, within Psest_0373 at 400.131 kb on + strand, within Psest_0373 at 400.131 kb on + strand, within Psest_0373 at 400.131 kb on + strand, within Psest_0373 at 400.131 kb on + strand, within Psest_0373 at 400.131 kb on + strand, within Psest_0373 at 400.131 kb on + strand, within Psest_0373 at 400.131 kb on + strand, within Psest_0373 at 400.131 kb on + strand, within Psest_0373 at 400.131 kb on + strand, within Psest_0373 at 400.131 kb on + strand, within Psest_0373 at 400.131 kb on + strand, within Psest_0373 at 400.131 kb on + strand, within Psest_0373 at 400.131 kb on + strand, within Psest_0373 at 400.131 kb on + strand, within Psest_0373 at 400.131 kb on + strand, within Psest_0373 at 400.131 kb on + strand, within Psest_0373 at 400.132 kb on - strand, within Psest_0373 at 400.132 kb on - strand, within Psest_0373 at 400.132 kb on - strand, within Psest_0373 at 400.132 kb on - strand, within Psest_0373 at 400.132 kb on - strand, within Psest_0373 at 400.132 kb on - strand, within Psest_0373 at 400.132 kb on - strand, within Psest_0373 at 400.132 kb on - strand, within Psest_0373 at 400.132 kb on - strand, within Psest_0373 at 400.132 kb on - strand, within Psest_0373 at 400.132 kb on - strand, within Psest_0373 at 400.132 kb on - strand, within Psest_0373 at 400.132 kb on - strand, within Psest_0373 at 400.132 kb on - strand, within Psest_0373 at 400.132 kb on - strand, within Psest_0373 at 400.132 kb on - strand, within Psest_0373 at 400.132 kb on - strand, within Psest_0373 at 400.132 kb on - strand, within Psest_0373 at 400.132 kb on - strand, within Psest_0373 at 400.132 kb on - strand, within Psest_0373 at 400.132 kb on - strand, within Psest_0373 at 400.132 kb on - strand, within Psest_0373 at 400.132 kb on - strand, within Psest_0373 at 400.132 kb on - strand, within Psest_0373 at 400.132 kb on - strand, within Psest_0373 at 400.132 kb on - strand, within Psest_0373 at 400.132 kb on - strand, within Psest_0373 at 400.132 kb on - strand, within Psest_0373 at 400.132 kb on - strand, within Psest_0373 at 400.132 kb on - strand, within Psest_0373 at 400.132 kb on - strand, within Psest_0373 at 400.132 kb on - strand, within Psest_0373 at 400.132 kb on - strand, within Psest_0373 at 400.140 kb on + strand, within Psest_0373 at 400.398 kb on + strand, within Psest_0373 at 400.473 kb on - strand, within Psest_0373 at 400.533 kb on + strand at 400.607 kb on + strand at 400.607 kb on + strand at 400.607 kb on + strand at 400.607 kb on + strand at 400.607 kb on + strand at 400.607 kb on + strand at 400.607 kb on + strand at 400.607 kb on + strand at 400.607 kb on + strand at 400.607 kb on + strand at 400.607 kb on + strand at 400.607 kb on + strand at 400.608 kb on - strand at 400.608 kb on - strand at 400.608 kb on - strand at 400.608 kb on - strand at 400.608 kb on - strand at 400.608 kb on - strand at 400.608 kb on - strand at 400.608 kb on - strand at 400.864 kb on - strand at 400.898 kb on + strand at 400.899 kb on - strand at 400.899 kb on - strand at 400.906 kb on + strand at 400.907 kb on - strand at 401.056 kb on + strand at 401.187 kb on - strand, within Psest_0374 at 401.187 kb on - strand, within Psest_0374 at 401.188 kb on + strand, within Psest_0374 at 401.188 kb on + strand, within Psest_0374 at 401.189 kb on - strand, within Psest_0374 at 401.282 kb on + strand, within Psest_0374 at 401.430 kb on - strand, within Psest_0374 at 401.430 kb on - strand, within Psest_0374 at 401.510 kb on + strand, within Psest_0374 at 401.510 kb on + strand, within Psest_0374 at 401.510 kb on + strand, within Psest_0374 at 401.511 kb on - strand, within Psest_0374 at 401.511 kb on - strand, within Psest_0374 at 401.511 kb on - strand, within Psest_0374 at 401.511 kb on - strand, within Psest_0374 at 401.654 kb on + strand, within Psest_0374 at 401.655 kb on - strand, within Psest_0374 at 401.684 kb on + strand, within Psest_0374 at 401.684 kb on + strand, within Psest_0374 at 401.684 kb on + strand, within Psest_0374 at 401.685 kb on - strand, within Psest_0374 at 401.685 kb on - strand, within Psest_0374 at 401.685 kb on - strand, within Psest_0374 at 401.685 kb on - strand, within Psest_0374 at 401.697 kb on - strand, within Psest_0374 at 401.720 kb on + strand, within Psest_0374 at 401.720 kb on + strand, within Psest_0374 at 401.768 kb on + strand, within Psest_0374 at 401.769 kb on - strand, within Psest_0374 at 401.769 kb on - strand, within Psest_0374 at 401.769 kb on - strand, within Psest_0374 at 401.769 kb on - strand, within Psest_0374 at 401.864 kb on + strand, within Psest_0374 at 401.958 kb on - strand at 402.000 kb on - strand at 402.027 kb on - strand at 402.082 kb on + strand at 402.082 kb on + strand at 402.082 kb on + strand at 402.082 kb on + strand at 402.082 kb on + strand at 402.083 kb on - strand at 402.083 kb on - strand at 402.083 kb on - strand at 402.083 kb on - strand at 402.083 kb on - strand at 402.083 kb on - strand at 402.083 kb on - strand at 402.083 kb on - strand at 402.090 kb on + strand at 402.090 kb on + strand at 402.398 kb on + strand, within Psest_0375 at 402.399 kb on - strand, within Psest_0375 at 402.399 kb on - strand, within Psest_0375 at 402.408 kb on + strand, within Psest_0375 at 402.408 kb on + strand, within Psest_0375 at 402.409 kb on - strand, within Psest_0375 at 402.409 kb on - strand, within Psest_0375 at 402.409 kb on - strand, within Psest_0375 at 402.409 kb on - strand, within Psest_0375 at 402.409 kb on - strand, within Psest_0375 at 402.960 kb on + strand, within Psest_0375 at 402.960 kb on + strand, within Psest_0375 at 402.960 kb on + strand, within Psest_0375 at 402.960 kb on + strand, within Psest_0375 at 402.960 kb on + strand, within Psest_0375 at 402.960 kb on + strand, within Psest_0375 at 402.960 kb on + strand, within Psest_0375 at 402.961 kb on - strand, within Psest_0375 at 402.961 kb on - strand, within Psest_0375
Per-strain Table
Position Strand Gene LocusTag Fraction 5-Hydroxymethylfurfural 5 mM remove 400,099 - Psest_0373 0.61 -1.8 400,099 - Psest_0373 0.61 +0.9 400,127 + Psest_0373 0.63 +0.9 400,127 + Psest_0373 0.63 -1.0 400,127 + Psest_0373 0.63 +0.8 400,127 + Psest_0373 0.63 -0.1 400,127 + Psest_0373 0.63 -0.5 400,127 + Psest_0373 0.63 -0.4 400,127 + Psest_0373 0.63 +0.6 400,127 + Psest_0373 0.63 -1.6 400,127 + Psest_0373 0.63 -0.8 400,127 + Psest_0373 0.63 -0.3 400,127 + Psest_0373 0.63 +0.7 400,127 + Psest_0373 0.63 +1.2 400,127 + Psest_0373 0.63 -2.2 400,127 + Psest_0373 0.63 -2.1 400,127 + Psest_0373 0.63 -0.0 400,128 - Psest_0373 0.63 +0.3 400,128 - Psest_0373 0.63 +1.2 400,128 - Psest_0373 0.63 -1.7 400,128 - Psest_0373 0.63 -1.1 400,128 - Psest_0373 0.63 -0.2 400,128 - Psest_0373 0.63 -2.2 400,128 - Psest_0373 0.63 -0.3 400,128 - Psest_0373 0.63 -1.4 400,128 - Psest_0373 0.63 -0.5 400,128 - Psest_0373 0.63 -0.1 400,128 - Psest_0373 0.63 +0.4 400,128 - Psest_0373 0.63 +0.6 400,128 - Psest_0373 0.63 -0.9 400,128 - Psest_0373 0.63 +0.1 400,128 - Psest_0373 0.63 +1.8 400,128 - Psest_0373 0.63 +1.2 400,128 - Psest_0373 0.63 +0.7 400,128 - Psest_0373 0.63 -1.1 400,128 - Psest_0373 0.63 -0.8 400,128 - Psest_0373 0.63 +2.7 400,128 - Psest_0373 0.63 -0.8 400,128 - Psest_0373 0.63 -1.5 400,128 - Psest_0373 0.63 +0.1 400,128 - Psest_0373 0.63 -0.8 400,128 - Psest_0373 0.63 +0.5 400,128 - Psest_0373 0.63 -0.4 400,128 - Psest_0373 0.63 +1.8 400,128 - Psest_0373 0.63 -0.7 400,128 - Psest_0373 0.63 +0.1 400,128 - Psest_0373 0.63 -1.2 400,128 - Psest_0373 0.63 -1.9 400,128 - Psest_0373 0.63 +0.6 400,128 - Psest_0373 0.63 -0.4 400,129 + Psest_0373 0.63 +0.4 400,131 + Psest_0373 0.63 +1.1 400,131 + Psest_0373 0.63 -0.9 400,131 + Psest_0373 0.63 +1.0 400,131 + Psest_0373 0.63 +0.7 400,131 + Psest_0373 0.63 +0.1 400,131 + Psest_0373 0.63 +0.9 400,131 + Psest_0373 0.63 +0.9 400,131 + Psest_0373 0.63 +0.4 400,131 + Psest_0373 0.63 +0.7 400,131 + Psest_0373 0.63 +1.6 400,131 + Psest_0373 0.63 -1.4 400,131 + Psest_0373 0.63 +2.6 400,131 + Psest_0373 0.63 -2.2 400,131 + Psest_0373 0.63 +2.4 400,131 + Psest_0373 0.63 +1.3 400,131 + Psest_0373 0.63 +2.0 400,131 + Psest_0373 0.63 -0.4 400,131 + Psest_0373 0.63 -1.1 400,131 + Psest_0373 0.63 -2.0 400,131 + Psest_0373 0.63 +0.6 400,131 + Psest_0373 0.63 -1.1 400,131 + Psest_0373 0.63 +0.1 400,131 + Psest_0373 0.63 -1.0 400,131 + Psest_0373 0.63 +0.5 400,131 + Psest_0373 0.63 +0.7 400,131 + Psest_0373 0.63 +0.2 400,131 + Psest_0373 0.63 -0.8 400,131 + Psest_0373 0.63 -0.9 400,132 - Psest_0373 0.64 +3.1 400,132 - Psest_0373 0.64 +0.7 400,132 - Psest_0373 0.64 +0.2 400,132 - Psest_0373 0.64 -0.8 400,132 - Psest_0373 0.64 +0.1 400,132 - Psest_0373 0.64 -1.6 400,132 - Psest_0373 0.64 -2.0 400,132 - Psest_0373 0.64 +0.1 400,132 - Psest_0373 0.64 -0.8 400,132 - Psest_0373 0.64 +1.2 400,132 - Psest_0373 0.64 -0.1 400,132 - Psest_0373 0.64 -0.5 400,132 - Psest_0373 0.64 -1.6 400,132 - Psest_0373 0.64 -0.5 400,132 - Psest_0373 0.64 -0.4 400,132 - Psest_0373 0.64 -0.0 400,132 - Psest_0373 0.64 -1.7 400,132 - Psest_0373 0.64 +2.4 400,132 - Psest_0373 0.64 -1.6 400,132 - Psest_0373 0.64 -0.6 400,132 - Psest_0373 0.64 -1.5 400,132 - Psest_0373 0.64 +1.1 400,132 - Psest_0373 0.64 +0.0 400,132 - Psest_0373 0.64 -1.3 400,132 - Psest_0373 0.64 -2.1 400,132 - Psest_0373 0.64 +0.8 400,132 - Psest_0373 0.64 +0.2 400,132 - Psest_0373 0.64 -0.5 400,132 - Psest_0373 0.64 +1.4 400,132 - Psest_0373 0.64 +1.4 400,132 - Psest_0373 0.64 -2.2 400,132 - Psest_0373 0.64 -0.9 400,132 - Psest_0373 0.64 -0.4 400,140 + Psest_0373 0.64 +1.7 400,398 + Psest_0373 0.83 +0.5 400,473 - Psest_0373 0.88 +2.1 400,533 + +0.3 400,607 + -1.9 400,607 + +1.3 400,607 + -0.2 400,607 + +1.0 400,607 + -0.6 400,607 + -2.1 400,607 + -1.1 400,607 + -3.0 400,607 + -2.4 400,607 + +0.6 400,607 + +0.6 400,607 + +0.8 400,608 - -0.2 400,608 - -1.3 400,608 - -1.9 400,608 - +0.7 400,608 - +1.6 400,608 - +0.7 400,608 - -1.6 400,608 - -0.1 400,864 - +0.5 400,898 + -0.4 400,899 - +2.4 400,899 - +0.5 400,906 + -0.5 400,907 - +0.2 401,056 + -0.2 401,187 - Psest_0374 0.11 -1.0 401,187 - Psest_0374 0.11 -1.7 401,188 + Psest_0374 0.11 +1.0 401,188 + Psest_0374 0.11 +0.8 401,189 - Psest_0374 0.11 -0.3 401,282 + Psest_0374 0.21 +2.4 401,430 - Psest_0374 0.37 +0.1 401,430 - Psest_0374 0.37 -0.0 401,510 + Psest_0374 0.46 +0.3 401,510 + Psest_0374 0.46 +2.1 401,510 + Psest_0374 0.46 +0.8 401,511 - Psest_0374 0.46 -0.5 401,511 - Psest_0374 0.46 +3.3 401,511 - Psest_0374 0.46 -1.5 401,511 - Psest_0374 0.46 -2.7 401,654 + Psest_0374 0.62 -1.0 401,655 - Psest_0374 0.62 +0.4 401,684 + Psest_0374 0.65 +0.6 401,684 + Psest_0374 0.65 +0.8 401,684 + Psest_0374 0.65 +0.3 401,685 - Psest_0374 0.65 -1.3 401,685 - Psest_0374 0.65 +0.7 401,685 - Psest_0374 0.65 +2.3 401,685 - Psest_0374 0.65 +1.7 401,697 - Psest_0374 0.67 -2.4 401,720 + Psest_0374 0.69 -0.2 401,720 + Psest_0374 0.69 +0.5 401,768 + Psest_0374 0.74 +1.3 401,769 - Psest_0374 0.74 +1.5 401,769 - Psest_0374 0.74 +0.0 401,769 - Psest_0374 0.74 -0.2 401,769 - Psest_0374 0.74 +2.5 401,864 + Psest_0374 0.85 +0.3 401,958 - -1.1 402,000 - -1.4 402,027 - -0.0 402,082 + +2.5 402,082 + +0.3 402,082 + -0.7 402,082 + -2.7 402,082 + +1.7 402,083 - -2.4 402,083 - -1.6 402,083 - +1.1 402,083 - -0.1 402,083 - -0.6 402,083 - -1.1 402,083 - -0.4 402,083 - +0.2 402,090 + -0.5 402,090 + +3.3 402,398 + Psest_0375 0.23 +0.9 402,399 - Psest_0375 0.23 -2.1 402,399 - Psest_0375 0.23 -1.2 402,408 + Psest_0375 0.23 -1.5 402,408 + Psest_0375 0.23 -0.8 402,409 - Psest_0375 0.23 -0.3 402,409 - Psest_0375 0.23 +0.4 402,409 - Psest_0375 0.23 -0.6 402,409 - Psest_0375 0.23 +0.5 402,409 - Psest_0375 0.23 +0.4 402,960 + Psest_0375 0.62 -0.7 402,960 + Psest_0375 0.62 -0.8 402,960 + Psest_0375 0.62 -1.4 402,960 + Psest_0375 0.62 +1.6 402,960 + Psest_0375 0.62 -1.0 402,960 + Psest_0375 0.62 +1.6 402,960 + Psest_0375 0.62 -1.8 402,961 - Psest_0375 0.62 -0.1 402,961 - Psest_0375 0.62 +0.4
Or see this region's nucleotide sequence