Experiment: 5-Hydroxymethylfurfural 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0333 and Psest_0334 are separated by 60 nucleotides Psest_0334 and Psest_0335 are separated by 319 nucleotides
Psest_0333: Psest_0333 - fructose-bisphosphate aldolase, class II, Calvin cycle subtype, at 356,117 to 357,181
_0333
Psest_0334: Psest_0334 - Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains, at 357,242 to 357,622
_0334
Psest_0335: Psest_0335 - Methylase involved in ubiquinone/menaquinone biosynthesis, at 357,942 to 358,556
_0335
Position (kb) 357
358 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 357.193 kb on - strand at 357.342 kb on + strand, within Psest_0334 at 357.342 kb on + strand, within Psest_0334 at 357.343 kb on - strand, within Psest_0334 at 357.343 kb on - strand, within Psest_0334 at 357.343 kb on - strand, within Psest_0334 at 357.343 kb on - strand, within Psest_0334 at 357.571 kb on + strand, within Psest_0334 at 357.572 kb on - strand, within Psest_0334 at 357.642 kb on + strand at 357.643 kb on - strand at 357.643 kb on - strand at 357.643 kb on - strand at 357.643 kb on - strand at 357.643 kb on - strand at 357.812 kb on + strand at 357.812 kb on + strand at 357.813 kb on - strand at 357.813 kb on - strand at 357.827 kb on - strand at 357.925 kb on + strand at 357.925 kb on + strand at 357.925 kb on + strand at 357.925 kb on + strand at 357.926 kb on - strand at 357.926 kb on - strand at 357.926 kb on - strand at 357.981 kb on + strand at 357.982 kb on - strand at 357.982 kb on - strand at 357.982 kb on - strand at 357.982 kb on - strand at 357.982 kb on - strand at 357.984 kb on + strand at 357.985 kb on - strand at 358.156 kb on + strand, within Psest_0335 at 358.312 kb on + strand, within Psest_0335 at 358.312 kb on + strand, within Psest_0335 at 358.312 kb on + strand, within Psest_0335 at 358.428 kb on + strand, within Psest_0335 at 358.429 kb on - strand, within Psest_0335 at 358.430 kb on + strand, within Psest_0335 at 358.430 kb on + strand, within Psest_0335 at 358.430 kb on + strand, within Psest_0335 at 358.430 kb on + strand, within Psest_0335 at 358.430 kb on + strand, within Psest_0335 at 358.430 kb on + strand, within Psest_0335 at 358.431 kb on - strand, within Psest_0335 at 358.431 kb on - strand, within Psest_0335 at 358.431 kb on - strand, within Psest_0335 at 358.431 kb on - strand, within Psest_0335 at 358.449 kb on - strand, within Psest_0335 at 358.449 kb on - strand, within Psest_0335 at 358.488 kb on + strand, within Psest_0335 at 358.488 kb on + strand, within Psest_0335 at 358.488 kb on + strand, within Psest_0335 at 358.488 kb on + strand, within Psest_0335 at 358.488 kb on + strand, within Psest_0335 at 358.488 kb on + strand, within Psest_0335 at 358.488 kb on + strand, within Psest_0335 at 358.489 kb on - strand, within Psest_0335 at 358.489 kb on - strand, within Psest_0335 at 358.489 kb on - strand, within Psest_0335
Per-strain Table
Position Strand Gene LocusTag Fraction 5-Hydroxymethylfurfural 5 mM remove 357,193 - -1.6 357,342 + Psest_0334 0.26 -0.7 357,342 + Psest_0334 0.26 -3.3 357,343 - Psest_0334 0.27 -0.8 357,343 - Psest_0334 0.27 -0.6 357,343 - Psest_0334 0.27 -1.6 357,343 - Psest_0334 0.27 -1.4 357,571 + Psest_0334 0.86 -1.4 357,572 - Psest_0334 0.87 -0.4 357,642 + -0.5 357,643 - -0.1 357,643 - +1.2 357,643 - +0.7 357,643 - +0.7 357,643 - +0.1 357,812 + -0.1 357,812 + -1.6 357,813 - +0.5 357,813 - +0.2 357,827 - -0.1 357,925 + -0.1 357,925 + -0.3 357,925 + -1.1 357,925 + -1.6 357,926 - -0.3 357,926 - +0.3 357,926 - +0.4 357,981 + +1.3 357,982 - +0.7 357,982 - +0.6 357,982 - +2.0 357,982 - +0.7 357,982 - -0.1 357,984 + +2.4 357,985 - +0.3 358,156 + Psest_0335 0.35 -1.8 358,312 + Psest_0335 0.60 -0.6 358,312 + Psest_0335 0.60 +1.8 358,312 + Psest_0335 0.60 -2.3 358,428 + Psest_0335 0.79 -0.8 358,429 - Psest_0335 0.79 -0.8 358,430 + Psest_0335 0.79 +0.9 358,430 + Psest_0335 0.79 +2.2 358,430 + Psest_0335 0.79 +0.8 358,430 + Psest_0335 0.79 -1.0 358,430 + Psest_0335 0.79 +0.4 358,430 + Psest_0335 0.79 +1.7 358,431 - Psest_0335 0.80 +1.3 358,431 - Psest_0335 0.80 +1.5 358,431 - Psest_0335 0.80 +0.1 358,431 - Psest_0335 0.80 +1.0 358,449 - Psest_0335 0.82 +0.4 358,449 - Psest_0335 0.82 -0.6 358,488 + Psest_0335 0.89 +0.3 358,488 + Psest_0335 0.89 -1.5 358,488 + Psest_0335 0.89 -0.2 358,488 + Psest_0335 0.89 +0.2 358,488 + Psest_0335 0.89 -0.3 358,488 + Psest_0335 0.89 +1.0 358,488 + Psest_0335 0.89 -0.7 358,489 - Psest_0335 0.89 -0.8 358,489 - Psest_0335 0.89 +0.7 358,489 - Psest_0335 0.89 -1.0
Or see this region's nucleotide sequence