Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3113

Experiment: 5-Hydroxymethylfurfural 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	5-Hydroxymethylfurfural 5 mM
3,288,930	-		Psest_3111	0.55	+0.6
3,289,001	+		Psest_3111	0.72	+0.2
3,289,001	+		Psest_3111	0.72	+1.2
3,289,001	+		Psest_3111	0.72	+0.9
3,289,002	-		Psest_3111	0.72	-0.4
3,289,002	-		Psest_3111	0.72	-1.3
3,289,002	-		Psest_3111	0.72	+0.9
3,289,002	-		Psest_3111	0.72	+0.0
3,289,266	+				+1.1
3,289,267	-				+3.1
3,289,267	-				-0.5
3,289,267	-				+3.2
3,289,346	+				+1.3
3,289,346	+				+0.5
3,289,346	+				-0.9
3,289,346	+				+1.3
3,289,347	-				+0.2
3,289,517	+		Psest_3112	0.29	-0.6
3,289,517	+		Psest_3112	0.29	+1.4
3,289,518	-		Psest_3112	0.29	+0.1
3,289,518	-		Psest_3112	0.29	+1.7
3,289,532	+		Psest_3112	0.31	+1.0
3,289,532	+		Psest_3112	0.31	+0.0
3,289,532	+		Psest_3112	0.31	+1.7
3,289,532	+		Psest_3112	0.31	+2.5
3,289,532	+		Psest_3112	0.31	-1.5
3,289,533	-		Psest_3112	0.31	-1.5
3,289,533	-		Psest_3112	0.31	+0.1
3,289,647	-		Psest_3112	0.51	+1.7
3,289,647	-		Psest_3112	0.51	+2.2
3,289,929	+				+2.7
3,289,929	+				+1.2
3,289,929	+				+2.3
3,289,930	-				+1.1
3,289,930	-				-0.1
3,290,142	+		Psest_3113	0.37	+0.2
3,290,143	-		Psest_3113	0.37	-0.7
3,290,143	-		Psest_3113	0.37	-0.9
3,290,251	+		Psest_3113	0.56	-1.1
3,290,340	+		Psest_3113	0.71	+0.6
3,290,657	-				+0.2
3,290,782	+		Psest_3114	0.10	+1.4
3,290,782	+		Psest_3114	0.10	-0.2
3,290,782	+		Psest_3114	0.10	+2.2
3,290,782	+		Psest_3114	0.10	+0.2
3,290,782	+		Psest_3114	0.10	-1.0
3,290,782	+		Psest_3114	0.10	+3.7
3,290,782	+		Psest_3114	0.10	+3.8
3,290,782	+		Psest_3114	0.10	+0.6
3,290,782	+		Psest_3114	0.10	+1.4
3,290,783	-		Psest_3114	0.10	+1.9
3,290,783	-		Psest_3114	0.10	-0.9
3,290,783	-		Psest_3114	0.10	+0.1
3,290,783	-		Psest_3114	0.10	-0.9
3,291,018	+		Psest_3114	0.19	+2.2
3,291,018	+		Psest_3114	0.19	+1.7
3,291,018	+		Psest_3114	0.19	+0.2
3,291,018	+		Psest_3114	0.19	+2.0
3,291,019	-		Psest_3114	0.19	-1.1
3,291,019	-		Psest_3114	0.19	+1.2
3,291,019	-		Psest_3114	0.19	-0.1
3,291,019	-		Psest_3114	0.19	+2.2
3,291,019	-		Psest_3114	0.19	-0.1
3,291,019	-		Psest_3114	0.19	+1.2
3,291,019	-		Psest_3114	0.19	-1.1
3,291,196	+		Psest_3114	0.26	-0.1
3,291,196	+		Psest_3114	0.26	+3.9
3,291,197	-		Psest_3114	0.26	+1.0
3,291,341	-		Psest_3114	0.31	+0.6
3,291,445	+		Psest_3114	0.35	-0.3
3,291,445	+		Psest_3114	0.35	-0.9
3,291,445	+		Psest_3114	0.35	-0.9
3,291,445	+		Psest_3114	0.35	-0.3
3,291,446	-		Psest_3114	0.35	-0.5
3,291,446	-		Psest_3114	0.35	-0.6