Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2754

Experiment: 5-Hydroxymethylfurfural 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	5-Hydroxymethylfurfural 5 mM
2,942,332	+		Psest_2752	0.13	+0.4
2,942,332	+		Psest_2752	0.13	+0.6
2,942,333	-		Psest_2752	0.13	+1.2
2,942,640	+		Psest_2752	0.86	+0.3
2,942,696	-				+1.2
2,942,699	-				+0.0
2,942,699	-				+0.0
2,942,928	-		Psest_2753	0.63	+0.7
2,942,951	+		Psest_2753	0.72	-1.8
2,942,976	+		Psest_2753	0.82	+0.1
2,942,976	+		Psest_2753	0.82	-1.9
2,942,976	+		Psest_2753	0.82	+0.0
2,942,976	+		Psest_2753	0.82	+1.0
2,942,976	+		Psest_2753	0.82	-1.1
2,942,976	+		Psest_2753	0.82	+1.8
2,942,976	+		Psest_2753	0.82	+0.1
2,942,976	+		Psest_2753	0.82	+0.8
2,942,976	+		Psest_2753	0.82	-0.0
2,942,977	-		Psest_2753	0.83	-0.1
2,942,977	-		Psest_2753	0.83	-1.0
2,942,977	-		Psest_2753	0.83	-1.0
2,942,977	-		Psest_2753	0.83	-0.7
2,943,009	+				-1.9
2,943,010	-				-0.6
2,943,010	-				+1.1
2,943,022	+				+1.1
2,943,022	+				-0.6
2,943,101	+				+0.0
2,943,102	-				+3.4
2,943,229	+				+1.7
2,943,229	+				-1.7
2,943,229	+				-1.8
2,943,229	+				+1.0
2,943,230	-				-0.1
2,943,230	-				+3.9
2,943,304	+		Psest_2754	0.15	+0.2
2,943,305	-		Psest_2754	0.15	+1.2
2,943,305	-		Psest_2754	0.15	-1.3
2,943,305	-		Psest_2754	0.15	-0.1
2,943,499	+		Psest_2754	0.35	-0.6
2,943,499	+		Psest_2754	0.35	-1.0
2,943,499	+		Psest_2754	0.35	-1.4
2,943,499	+		Psest_2754	0.35	+0.5
2,943,500	-		Psest_2754	0.35	+1.1
2,943,565	+		Psest_2754	0.41	+0.6
2,943,566	-		Psest_2754	0.41	-1.5
2,943,757	+		Psest_2754	0.60	+0.7
2,943,808	-		Psest_2754	0.65	+1.4
2,943,808	-		Psest_2754	0.65	-0.9
2,943,829	+		Psest_2754	0.68	-1.9
2,943,829	+		Psest_2754	0.68	+1.0
2,943,830	-		Psest_2754	0.68	-0.7
2,943,830	-		Psest_2754	0.68	+3.2
2,943,913	+		Psest_2754	0.76	-0.8
2,943,913	+		Psest_2754	0.76	+0.3
2,943,913	+		Psest_2754	0.76	+0.5
2,943,913	+		Psest_2754	0.76	+0.1
2,943,914	-		Psest_2754	0.76	+0.3
2,943,914	-		Psest_2754	0.76	+0.3
2,943,914	-		Psest_2754	0.76	-0.3
2,943,914	-		Psest_2754	0.76	+0.5
2,944,043	-		Psest_2754	0.89	+2.0
2,944,189	+				-0.8
2,944,189	+				+0.1
2,944,189	+				+0.1
2,944,189	+				+1.7
2,944,189	+				-0.9
2,944,189	+				-0.9
2,944,189	+				-0.5
2,944,190	-				-2.1
2,944,323	+				-1.2
2,944,325	+				+2.0
2,944,495	+				-1.3
2,944,496	-				-0.8
2,944,496	-				+2.1
2,944,514	+				-1.6
2,944,526	-				-1.1
2,944,570	+				-0.5
2,944,590	-				-0.1
2,944,593	+				-1.9
2,944,593	+				+0.6
2,944,593	+				-0.7
2,944,594	-				-0.2
2,944,711	+				+1.3
2,944,881	+		Psest_2755	0.24	-0.3
2,945,100	+		Psest_2755	0.45	+0.1
2,945,100	+		Psest_2755	0.45	+0.5
2,945,100	+		Psest_2755	0.45	+1.7
2,945,101	-		Psest_2755	0.45	+0.7
2,945,101	-		Psest_2755	0.45	-0.7