Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1549
Experiment: 5-Hydroxymethylfurfural 5 mM
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
| Position | Strand | Gene | LocusTag | Fraction | 5-Hydroxymethylfurfural 5 mM |
|---|---|---|---|---|---|
| remove | |||||
| 1,651,335 | + | +1.3 | |||
| 1,651,335 | + | -1.4 | |||
| 1,651,335 | + | -1.4 | |||
| 1,651,335 | + | +0.1 | |||
| 1,651,336 | - | +1.3 | |||
| 1,651,368 | - | +0.8 | |||
| 1,651,515 | - | Psest_1550 | 0.14 | -0.7 | |
| 1,651,517 | + | Psest_1550 | 0.14 | -1.2 | |
| 1,651,518 | - | Psest_1550 | 0.14 | -0.7 | |
| 1,651,649 | + | Psest_1550 | 0.24 | -1.4 | |
| 1,651,650 | - | Psest_1550 | 0.24 | -1.2 | |
| 1,651,791 | - | Psest_1550 | 0.35 | -2.5 | |
| 1,651,967 | + | Psest_1550 | 0.48 | -0.5 | |
| 1,651,968 | - | Psest_1550 | 0.48 | -2.6 |
Or see this region's nucleotide sequence