Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1547

Experiment: 5-Hydroxymethylfurfural 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	5-Hydroxymethylfurfural 5 mM
1,646,792	+		Psest_1546	0.17	-1.0
1,646,792	+		Psest_1546	0.17	-0.3
1,646,792	+		Psest_1546	0.17	-1.6
1,646,793	-		Psest_1546	0.18	+0.3
1,646,793	-		Psest_1546	0.18	-0.2
1,646,913	-		Psest_1546	0.28	-2.3
1,646,913	-		Psest_1546	0.28	-0.6
1,646,913	-		Psest_1546	0.28	+0.9
1,647,124	+		Psest_1546	0.47	-0.4
1,647,124	+		Psest_1546	0.47	+0.5
1,647,124	+		Psest_1546	0.47	+1.1
1,647,125	-		Psest_1546	0.47	+2.0
1,647,125	-		Psest_1546	0.47	+0.3
1,647,648	+				-2.5
1,647,648	+				-1.0
1,647,648	+				-0.1
1,647,648	+				+0.5
1,647,648	+				-0.1
1,647,648	+				-1.8
1,647,649	-				+1.9
1,647,649	-				+0.9
1,647,649	-				-0.3
1,647,706	-				-0.8
1,647,706	-				+0.8
1,647,717	-				-2.0
1,647,983	+		Psest_1547	0.34	+0.3
1,647,983	+		Psest_1547	0.34	-0.8
1,647,984	-		Psest_1547	0.34	-0.1
1,647,984	-		Psest_1547	0.34	-0.7
1,648,017	-		Psest_1547	0.39	-0.9
1,648,017	-		Psest_1547	0.39	-0.6
1,648,319	+		Psest_1547	0.81	-0.7
1,648,319	+		Psest_1547	0.81	-1.4
1,648,319	+		Psest_1547	0.81	+0.8
1,648,319	+		Psest_1547	0.81	-0.2
1,648,319	+		Psest_1547	0.81	-1.4
1,648,319	+		Psest_1547	0.81	-0.7
1,648,320	-		Psest_1547	0.81	+1.1
1,648,320	-		Psest_1547	0.81	-1.3
1,648,320	-		Psest_1547	0.81	-0.6
1,648,320	-		Psest_1547	0.81	+0.4
1,648,320	-		Psest_1547	0.81	-0.9
1,648,320	-		Psest_1547	0.81	+0.3
1,648,320	-		Psest_1547	0.81	-1.0
1,648,320	-		Psest_1547	0.81	-0.4
1,648,320	-		Psest_1547	0.81	+0.4
1,648,320	-		Psest_1547	0.81	-0.1
1,648,437	+				-1.9
1,648,465	+				-0.5
1,648,466	-				+0.7
1,648,466	-				+0.7
1,648,537	+				+0.4