Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0111

Experiment: 5-Hydroxymethylfurfural 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	5-Hydroxymethylfurfural 5 mM
108,398	-		Psest_0110	0.52	-3.2
108,445	+		Psest_0110	0.58	+0.7
108,445	+		Psest_0110	0.58	+2.0
108,445	+		Psest_0110	0.58	+0.2
108,445	+		Psest_0110	0.58	-0.7
108,445	+		Psest_0110	0.58	+1.0
108,445	+		Psest_0110	0.58	+0.4
108,445	+		Psest_0110	0.58	-0.6
108,445	+		Psest_0110	0.58	+0.3
108,445	+		Psest_0110	0.58	+0.4
108,446	-		Psest_0110	0.58	-0.8
108,446	-		Psest_0110	0.58	-0.5
108,446	-		Psest_0110	0.58	+0.1
108,446	-		Psest_0110	0.58	+0.9
108,446	-		Psest_0110	0.58	+0.9
108,446	-		Psest_0110	0.58	+0.6
108,568	+		Psest_0110	0.74	+0.5
108,568	+		Psest_0110	0.74	-1.1
108,568	+		Psest_0110	0.74	-1.3
108,568	+		Psest_0110	0.74	+2.5
108,569	-		Psest_0110	0.74	-0.7
108,569	-		Psest_0110	0.74	+1.0
108,569	-		Psest_0110	0.74	-0.1
108,700	+				-1.4
108,700	+				-0.4
108,701	-				+0.2
108,701	-				+0.1
108,701	-				-3.0
108,702	+				-2.0
108,703	-				+0.1
108,883	+				-0.7
108,910	-				+0.6
109,257	-				+0.8
109,623	-		Psest_0111	0.33	-1.6
109,748	+		Psest_0111	0.43	+2.2
109,748	+		Psest_0111	0.43	+0.5
109,748	+		Psest_0111	0.43	-0.4
109,748	+		Psest_0111	0.43	-0.8
109,748	+		Psest_0111	0.43	-1.1
109,748	+		Psest_0111	0.43	-0.5
109,748	+		Psest_0111	0.43	+0.1
109,748	+		Psest_0111	0.43	-2.4
109,748	+		Psest_0111	0.43	-0.8
109,748	+		Psest_0111	0.43	-1.6
109,749	-		Psest_0111	0.43	-0.4
109,749	-		Psest_0111	0.43	+0.6
109,749	-		Psest_0111	0.43	-1.5
109,749	-		Psest_0111	0.43	-0.5
109,749	-		Psest_0111	0.43	-0.3
109,749	-		Psest_0111	0.43	+0.9
109,751	+		Psest_0111	0.43	-0.8
109,751	+		Psest_0111	0.43	-2.1
109,752	-		Psest_0111	0.43	-1.6
109,752	-		Psest_0111	0.43	-1.1
109,761	-		Psest_0111	0.44	-1.5
109,761	-		Psest_0111	0.44	-0.5
109,850	+		Psest_0111	0.51	+1.1
109,851	-		Psest_0111	0.51	-0.5
109,851	-		Psest_0111	0.51	-2.0
110,027	+		Psest_0111	0.65	+0.8
110,172	-		Psest_0111	0.77	-1.8
110,172	-		Psest_0111	0.77	-0.2
110,172	-		Psest_0111	0.77	-0.5
110,336	+		Psest_0111	0.90	-1.2
110,336	+		Psest_0111	0.90	+0.5
110,336	+		Psest_0111	0.90	+0.1
110,336	+		Psest_0111	0.90	+0.4
110,336	+		Psest_0111	0.90	+0.4
110,337	-		Psest_0111	0.90	-2.4
110,337	-		Psest_0111	0.90	+1.1
110,337	-		Psest_0111	0.90	-0.4
110,337	-		Psest_0111	0.90	+1.5
110,337	-		Psest_0111	0.90	-0.0
110,337	-		Psest_0111	0.90	-1.1
110,625	+				+1.0
110,625	+				+0.6
110,662	+				+1.0
110,662	+				-1.3
110,662	+				+0.4
110,662	+				+2.3
110,662	+				+0.2
110,663	-				-1.3
110,663	-				-0.5
110,688	-				-0.6
110,819	+				-3.0
110,819	+				+0.4
110,819	+				-0.9
110,819	+				-0.3
110,820	-				+1.7
110,820	-				+1.2
110,820	-				-2.3
110,820	-				-0.2
110,820	-				-1.3
110,820	-				-1.6
110,820	-				-0.4
110,949	-		Psest_0112	0.17	+1.0
111,296	+		Psest_0112	0.54	+1.1
111,297	-		Psest_0112	0.54	+0.6
111,297	-		Psest_0112	0.54	+0.2
111,297	-		Psest_0112	0.54	-0.2
111,297	-		Psest_0112	0.54	-0.2
111,401	+		Psest_0112	0.66	+1.7
111,402	-		Psest_0112	0.66	-1.2
111,402	-		Psest_0112	0.66	-0.7
111,402	-		Psest_0112	0.66	-0.5