Experiment: D-Xylose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS18405 and HMPREF1058_RS18400 are separated by 162 nucleotides HMPREF1058_RS18400 and HMPREF1058_RS18395 are separated by 427 nucleotides
HMPREF1058_RS18405: HMPREF1058_RS18405 - hypothetical protein, at 163,933 to 165,123
_RS18405
HMPREF1058_RS18400: HMPREF1058_RS18400 - RidA family protein, at 165,286 to 165,663
_RS18400
HMPREF1058_RS18395: HMPREF1058_RS18395 - transcription termination factor Rho, at 166,091 to 168,100
_RS18395
Position (kb) 165
166 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 164.309 kb on - strand, within HMPREF1058_RS18405 at 164.355 kb on + strand, within HMPREF1058_RS18405 at 164.356 kb on - strand, within HMPREF1058_RS18405 at 164.398 kb on - strand, within HMPREF1058_RS18405 at 164.475 kb on + strand, within HMPREF1058_RS18405 at 164.475 kb on + strand, within HMPREF1058_RS18405 at 164.475 kb on + strand, within HMPREF1058_RS18405 at 164.565 kb on - strand, within HMPREF1058_RS18405 at 164.616 kb on - strand, within HMPREF1058_RS18405 at 164.637 kb on + strand at 164.728 kb on - strand, within HMPREF1058_RS18405 at 164.748 kb on - strand, within HMPREF1058_RS18405 at 164.755 kb on + strand, within HMPREF1058_RS18405 at 164.757 kb on + strand, within HMPREF1058_RS18405 at 164.758 kb on - strand, within HMPREF1058_RS18405 at 164.848 kb on + strand, within HMPREF1058_RS18405 at 164.849 kb on - strand, within HMPREF1058_RS18405 at 164.919 kb on - strand, within HMPREF1058_RS18405 at 165.049 kb on - strand at 165.075 kb on + strand at 165.083 kb on - strand at 165.089 kb on - strand at 165.137 kb on - strand at 165.246 kb on + strand at 165.347 kb on - strand, within HMPREF1058_RS18400 at 165.421 kb on - strand, within HMPREF1058_RS18400 at 165.450 kb on + strand, within HMPREF1058_RS18400 at 165.453 kb on + strand, within HMPREF1058_RS18400 at 165.584 kb on - strand, within HMPREF1058_RS18400 at 165.588 kb on + strand, within HMPREF1058_RS18400 at 165.625 kb on - strand, within HMPREF1058_RS18400 at 165.713 kb on - strand at 165.907 kb on + strand at 166.009 kb on + strand at 166.009 kb on + strand at 166.024 kb on + strand at 166.076 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Xylose 10 mM (C) remove 164,309 - HMPREF1058_RS18405 0.32 +0.6 164,355 + HMPREF1058_RS18405 0.35 +0.4 164,356 - HMPREF1058_RS18405 0.36 +0.8 164,398 - HMPREF1058_RS18405 0.39 +0.7 164,475 + HMPREF1058_RS18405 0.46 +1.9 164,475 + HMPREF1058_RS18405 0.46 +0.5 164,475 + HMPREF1058_RS18405 0.46 +0.8 164,565 - HMPREF1058_RS18405 0.53 -1.9 164,616 - HMPREF1058_RS18405 0.57 +0.0 164,637 + +1.8 164,728 - HMPREF1058_RS18405 0.67 +0.2 164,748 - HMPREF1058_RS18405 0.68 +0.8 164,755 + HMPREF1058_RS18405 0.69 +1.6 164,757 + HMPREF1058_RS18405 0.69 -0.0 164,758 - HMPREF1058_RS18405 0.69 +1.2 164,848 + HMPREF1058_RS18405 0.77 +0.2 164,849 - HMPREF1058_RS18405 0.77 +0.2 164,919 - HMPREF1058_RS18405 0.83 +1.8 165,049 - +0.0 165,075 + +0.3 165,083 - +1.1 165,089 - -1.0 165,137 - -0.3 165,246 + -1.9 165,347 - HMPREF1058_RS18400 0.16 -0.6 165,421 - HMPREF1058_RS18400 0.36 -1.4 165,450 + HMPREF1058_RS18400 0.43 -1.9 165,453 + HMPREF1058_RS18400 0.44 -0.6 165,584 - HMPREF1058_RS18400 0.79 -1.8 165,588 + HMPREF1058_RS18400 0.80 -2.0 165,625 - HMPREF1058_RS18400 0.90 -3.3 165,713 - +0.3 165,907 + +0.5 166,009 + +1.0 166,009 + +1.5 166,024 + +1.5 166,076 + -1.0
Or see this region's nucleotide sequence