Experiment: D-Xylose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS17860 and HMPREF1058_RS17855 are separated by 33 nucleotides HMPREF1058_RS17855 and HMPREF1058_RS17850 are separated by 450 nucleotides
HMPREF1058_RS17860: HMPREF1058_RS17860 - oligopeptide transporter, OPT family, at 312,981 to 314,972
_RS17860
HMPREF1058_RS17855: HMPREF1058_RS17855 - alpha/beta hydrolase, at 315,006 to 315,851
_RS17855
HMPREF1058_RS17850: HMPREF1058_RS17850 - ferritin, at 316,302 to 316,784
_RS17850
Position (kb) 315
316 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 314.093 kb on - strand, within HMPREF1058_RS17860 at 314.131 kb on + strand, within HMPREF1058_RS17860 at 314.132 kb on - strand, within HMPREF1058_RS17860 at 314.219 kb on + strand, within HMPREF1058_RS17860 at 314.352 kb on - strand, within HMPREF1058_RS17860 at 314.493 kb on + strand at 314.552 kb on - strand, within HMPREF1058_RS17860 at 314.628 kb on + strand, within HMPREF1058_RS17860 at 314.916 kb on + strand at 314.916 kb on + strand at 314.917 kb on - strand at 314.918 kb on + strand at 314.932 kb on + strand at 315.053 kb on - strand at 315.070 kb on + strand at 315.083 kb on - strand at 315.176 kb on + strand, within HMPREF1058_RS17855 at 315.237 kb on + strand, within HMPREF1058_RS17855 at 315.241 kb on + strand, within HMPREF1058_RS17855 at 315.241 kb on + strand, within HMPREF1058_RS17855 at 315.241 kb on + strand, within HMPREF1058_RS17855 at 315.242 kb on - strand, within HMPREF1058_RS17855 at 315.242 kb on - strand, within HMPREF1058_RS17855 at 315.242 kb on - strand, within HMPREF1058_RS17855 at 315.242 kb on - strand, within HMPREF1058_RS17855 at 315.273 kb on - strand, within HMPREF1058_RS17855 at 315.274 kb on + strand, within HMPREF1058_RS17855 at 315.314 kb on - strand, within HMPREF1058_RS17855 at 315.314 kb on - strand, within HMPREF1058_RS17855 at 315.349 kb on + strand, within HMPREF1058_RS17855 at 315.350 kb on - strand, within HMPREF1058_RS17855 at 315.479 kb on + strand, within HMPREF1058_RS17855 at 315.480 kb on - strand, within HMPREF1058_RS17855 at 315.706 kb on - strand, within HMPREF1058_RS17855 at 315.754 kb on - strand, within HMPREF1058_RS17855 at 315.754 kb on - strand, within HMPREF1058_RS17855 at 315.795 kb on - strand at 315.799 kb on - strand at 315.800 kb on + strand at 315.909 kb on - strand at 315.909 kb on - strand at 315.917 kb on + strand at 315.918 kb on - strand at 315.976 kb on + strand at 315.988 kb on + strand at 315.989 kb on - strand at 315.989 kb on - strand at 316.114 kb on + strand at 316.115 kb on - strand at 316.116 kb on + strand at 316.116 kb on + strand at 316.117 kb on - strand at 316.117 kb on - strand at 316.177 kb on - strand at 316.200 kb on + strand at 316.261 kb on - strand at 316.388 kb on + strand, within HMPREF1058_RS17850 at 316.471 kb on - strand, within HMPREF1058_RS17850 at 316.514 kb on - strand, within HMPREF1058_RS17850 at 316.515 kb on + strand, within HMPREF1058_RS17850 at 316.516 kb on - strand, within HMPREF1058_RS17850 at 316.516 kb on - strand, within HMPREF1058_RS17850 at 316.714 kb on + strand, within HMPREF1058_RS17850 at 316.754 kb on + strand at 316.755 kb on - strand at 316.848 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Xylose 10 mM (C) remove 314,093 - HMPREF1058_RS17860 0.56 -0.5 314,131 + HMPREF1058_RS17860 0.58 -1.1 314,132 - HMPREF1058_RS17860 0.58 -0.6 314,219 + HMPREF1058_RS17860 0.62 -3.1 314,352 - HMPREF1058_RS17860 0.69 -0.9 314,493 + -0.1 314,552 - HMPREF1058_RS17860 0.79 +1.0 314,628 + HMPREF1058_RS17860 0.83 +0.7 314,916 + -0.9 314,916 + +0.7 314,917 - +0.5 314,918 + +0.1 314,932 + +2.4 315,053 - +0.4 315,070 + -0.8 315,083 - -0.4 315,176 + HMPREF1058_RS17855 0.20 -0.4 315,237 + HMPREF1058_RS17855 0.27 +1.1 315,241 + HMPREF1058_RS17855 0.28 +0.0 315,241 + HMPREF1058_RS17855 0.28 -0.2 315,241 + HMPREF1058_RS17855 0.28 +1.1 315,242 - HMPREF1058_RS17855 0.28 -2.5 315,242 - HMPREF1058_RS17855 0.28 -0.5 315,242 - HMPREF1058_RS17855 0.28 -0.9 315,242 - HMPREF1058_RS17855 0.28 +1.0 315,273 - HMPREF1058_RS17855 0.32 -0.6 315,274 + HMPREF1058_RS17855 0.32 -1.4 315,314 - HMPREF1058_RS17855 0.36 -0.6 315,314 - HMPREF1058_RS17855 0.36 -0.2 315,349 + HMPREF1058_RS17855 0.41 +0.9 315,350 - HMPREF1058_RS17855 0.41 +0.8 315,479 + HMPREF1058_RS17855 0.56 -0.1 315,480 - HMPREF1058_RS17855 0.56 -0.0 315,706 - HMPREF1058_RS17855 0.83 +0.1 315,754 - HMPREF1058_RS17855 0.88 -0.6 315,754 - HMPREF1058_RS17855 0.88 +0.4 315,795 - -0.6 315,799 - +0.2 315,800 + +0.0 315,909 - -0.7 315,909 - -0.3 315,917 + +0.3 315,918 - -0.3 315,976 + +0.5 315,988 + +0.6 315,989 - -0.3 315,989 - -0.7 316,114 + -1.1 316,115 - -0.3 316,116 + +1.0 316,116 + +0.0 316,117 - +0.9 316,117 - -0.4 316,177 - -0.7 316,200 + +0.4 316,261 - +0.1 316,388 + HMPREF1058_RS17850 0.18 -0.5 316,471 - HMPREF1058_RS17850 0.35 +0.5 316,514 - HMPREF1058_RS17850 0.44 +0.3 316,515 + HMPREF1058_RS17850 0.44 -2.0 316,516 - HMPREF1058_RS17850 0.44 +0.1 316,516 - HMPREF1058_RS17850 0.44 +0.0 316,714 + HMPREF1058_RS17850 0.85 -1.2 316,754 + +1.0 316,755 - +1.7 316,848 + +0.6
Or see this region's nucleotide sequence