Experiment: D-Xylose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS16540 and HMPREF1058_RS16535 are separated by 17 nucleotides HMPREF1058_RS16535 and HMPREF1058_RS16530 are separated by 5 nucleotides HMPREF1058_RS16530 and HMPREF1058_RS16525 overlap by 1 nucleotides HMPREF1058_RS16525 and HMPREF1058_RS16520 are separated by 2 nucleotides HMPREF1058_RS16520 and HMPREF1058_RS16515 are separated by 45 nucleotides
HMPREF1058_RS16540: HMPREF1058_RS16540 - septum formation protein Maf, at 650,009 to 650,590
_RS16540
HMPREF1058_RS16535: HMPREF1058_RS16535 - HAD-IIIA family hydrolase, at 650,608 to 651,126
_RS16535
HMPREF1058_RS16530: HMPREF1058_RS16530 - Rossmann-like and DUF2520 domain-containing protein, at 651,132 to 651,938
_RS16530
HMPREF1058_RS16525: HMPREF1058_RS16525 - hypothetical protein, at 651,938 to 652,264
_RS16525
HMPREF1058_RS16520: HMPREF1058_RS16520 - nitroreductase family protein, at 652,267 to 652,803
_RS16520
HMPREF1058_RS16515: HMPREF1058_RS16515 - GNAT family N-acetyltransferase, at 652,849 to 653,871
_RS16515
Position (kb) 651
652 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 650.159 kb on - strand, within HMPREF1058_RS16540 at 650.160 kb on + strand, within HMPREF1058_RS16540 at 650.198 kb on + strand, within HMPREF1058_RS16540 at 650.351 kb on + strand, within HMPREF1058_RS16540 at 650.351 kb on + strand, within HMPREF1058_RS16540 at 650.351 kb on + strand, within HMPREF1058_RS16540 at 650.351 kb on + strand, within HMPREF1058_RS16540 at 650.352 kb on - strand, within HMPREF1058_RS16540 at 650.426 kb on + strand, within HMPREF1058_RS16540 at 650.426 kb on + strand, within HMPREF1058_RS16540 at 650.427 kb on - strand, within HMPREF1058_RS16540 at 650.427 kb on - strand, within HMPREF1058_RS16540 at 650.430 kb on + strand, within HMPREF1058_RS16540 at 650.430 kb on + strand, within HMPREF1058_RS16540 at 650.458 kb on + strand, within HMPREF1058_RS16540 at 650.513 kb on + strand, within HMPREF1058_RS16540 at 650.514 kb on - strand, within HMPREF1058_RS16540 at 651.134 kb on - strand at 651.400 kb on - strand, within HMPREF1058_RS16530 at 651.407 kb on - strand, within HMPREF1058_RS16530 at 651.567 kb on - strand, within HMPREF1058_RS16530 at 651.606 kb on - strand, within HMPREF1058_RS16530 at 651.646 kb on - strand, within HMPREF1058_RS16530 at 651.660 kb on - strand, within HMPREF1058_RS16530 at 651.672 kb on - strand, within HMPREF1058_RS16530 at 651.748 kb on - strand, within HMPREF1058_RS16530 at 651.753 kb on - strand, within HMPREF1058_RS16530 at 651.755 kb on - strand, within HMPREF1058_RS16530 at 651.755 kb on - strand, within HMPREF1058_RS16530 at 651.775 kb on - strand, within HMPREF1058_RS16530 at 651.853 kb on - strand, within HMPREF1058_RS16530 at 652.026 kb on - strand, within HMPREF1058_RS16525 at 652.056 kb on - strand, within HMPREF1058_RS16525 at 652.056 kb on - strand, within HMPREF1058_RS16525 at 652.120 kb on - strand, within HMPREF1058_RS16525 at 652.236 kb on + strand at 652.237 kb on - strand at 652.237 kb on - strand at 652.241 kb on - strand at 652.363 kb on - strand, within HMPREF1058_RS16520 at 652.405 kb on - strand, within HMPREF1058_RS16520 at 652.405 kb on - strand at 652.571 kb on - strand, within HMPREF1058_RS16520 at 652.579 kb on - strand, within HMPREF1058_RS16520 at 652.678 kb on - strand, within HMPREF1058_RS16520 at 652.724 kb on - strand, within HMPREF1058_RS16520 at 652.807 kb on - strand at 652.807 kb on - strand at 652.807 kb on - strand at 652.807 kb on - strand at 652.840 kb on - strand at 652.846 kb on - strand at 652.886 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Xylose 10 mM (C) remove 650,159 - HMPREF1058_RS16540 0.26 +1.7 650,160 + HMPREF1058_RS16540 0.26 +1.0 650,198 + HMPREF1058_RS16540 0.32 +0.3 650,351 + HMPREF1058_RS16540 0.59 +0.5 650,351 + HMPREF1058_RS16540 0.59 -2.8 650,351 + HMPREF1058_RS16540 0.59 -0.2 650,351 + HMPREF1058_RS16540 0.59 -0.8 650,352 - HMPREF1058_RS16540 0.59 +0.9 650,426 + HMPREF1058_RS16540 0.72 +1.0 650,426 + HMPREF1058_RS16540 0.72 -0.6 650,427 - HMPREF1058_RS16540 0.72 +0.3 650,427 - HMPREF1058_RS16540 0.72 +1.2 650,430 + HMPREF1058_RS16540 0.72 -0.1 650,430 + HMPREF1058_RS16540 0.72 -0.4 650,458 + HMPREF1058_RS16540 0.77 -0.6 650,513 + HMPREF1058_RS16540 0.87 -0.2 650,514 - HMPREF1058_RS16540 0.87 +0.2 651,134 - -1.1 651,400 - HMPREF1058_RS16530 0.33 -2.9 651,407 - HMPREF1058_RS16530 0.34 +0.6 651,567 - HMPREF1058_RS16530 0.54 -1.9 651,606 - HMPREF1058_RS16530 0.59 -1.8 651,646 - HMPREF1058_RS16530 0.64 +0.3 651,660 - HMPREF1058_RS16530 0.65 -1.0 651,672 - HMPREF1058_RS16530 0.67 -0.2 651,748 - HMPREF1058_RS16530 0.76 -2.0 651,753 - HMPREF1058_RS16530 0.77 +0.3 651,755 - HMPREF1058_RS16530 0.77 -1.8 651,755 - HMPREF1058_RS16530 0.77 -1.2 651,775 - HMPREF1058_RS16530 0.80 +0.2 651,853 - HMPREF1058_RS16530 0.89 -1.8 652,026 - HMPREF1058_RS16525 0.27 +2.3 652,056 - HMPREF1058_RS16525 0.36 +1.8 652,056 - HMPREF1058_RS16525 0.36 -0.2 652,120 - HMPREF1058_RS16525 0.56 -0.7 652,236 + +1.0 652,237 - -0.2 652,237 - +0.4 652,241 - -0.3 652,363 - HMPREF1058_RS16520 0.18 -1.6 652,405 - HMPREF1058_RS16520 0.26 +1.6 652,405 - +2.6 652,571 - HMPREF1058_RS16520 0.57 -0.6 652,579 - HMPREF1058_RS16520 0.58 -0.5 652,678 - HMPREF1058_RS16520 0.77 -2.6 652,724 - HMPREF1058_RS16520 0.85 -1.4 652,807 - +0.4 652,807 - +0.6 652,807 - -1.7 652,807 - -0.4 652,840 - +0.5 652,846 - +1.2 652,886 + +0.3
Or see this region's nucleotide sequence