Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS16255

Experiment: D-Xylose 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS16265 and HMPREF1058_RS16260 are separated by 188 nucleotidesHMPREF1058_RS16260 and HMPREF1058_RS16255 overlap by 4 nucleotidesHMPREF1058_RS16255 and HMPREF1058_RS16250 are separated by 26 nucleotides HMPREF1058_RS16265: HMPREF1058_RS16265 - SLC13 family permease, at 718,880 to 720,742 _RS16265 HMPREF1058_RS16260: HMPREF1058_RS16260 - hotdog fold thioesterase, at 720,931 to 721,338 _RS16260 HMPREF1058_RS16255: HMPREF1058_RS16255 - isochorismate synthase, at 721,335 to 722,477 _RS16255 HMPREF1058_RS16250: HMPREF1058_RS16250 - 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylic-acid synthase, at 722,504 to 724,177 _RS16250 Position (kb) 721 722 723Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 720.422 kb on - strand, within HMPREF1058_RS16265at 720.490 kb on + strand, within HMPREF1058_RS16265at 720.580 kb on + strandat 720.581 kb on - strandat 720.581 kb on - strandat 720.629 kb on + strandat 720.683 kb on + strandat 720.716 kb on + strandat 720.716 kb on + strandat 720.724 kb on + strandat 720.743 kb on - strandat 720.784 kb on + strandat 720.785 kb on - strandat 720.853 kb on + strandat 720.883 kb on + strandat 720.891 kb on - strandat 720.927 kb on - strandat 721.041 kb on - strand, within HMPREF1058_RS16260at 721.126 kb on - strand, within HMPREF1058_RS16260at 721.151 kb on - strand, within HMPREF1058_RS16260at 721.169 kb on + strand, within HMPREF1058_RS16260at 721.255 kb on - strand, within HMPREF1058_RS16260at 721.255 kb on - strand, within HMPREF1058_RS16260at 721.257 kb on - strand, within HMPREF1058_RS16260at 721.257 kb on - strand, within HMPREF1058_RS16260at 721.265 kb on + strand, within HMPREF1058_RS16260at 721.265 kb on + strand, within HMPREF1058_RS16260at 721.265 kb on + strand, within HMPREF1058_RS16260at 721.269 kb on + strand, within HMPREF1058_RS16260at 721.269 kb on + strand, within HMPREF1058_RS16260at 721.270 kb on - strand, within HMPREF1058_RS16260at 721.349 kb on + strandat 721.350 kb on - strandat 721.351 kb on + strandat 721.351 kb on + strandat 721.352 kb on - strandat 721.356 kb on - strandat 721.550 kb on - strand, within HMPREF1058_RS16255at 721.699 kb on - strand, within HMPREF1058_RS16255at 721.701 kb on - strand, within HMPREF1058_RS16255at 721.854 kb on + strand, within HMPREF1058_RS16255at 721.854 kb on + strand, within HMPREF1058_RS16255at 721.855 kb on - strand, within HMPREF1058_RS16255at 721.855 kb on - strand, within HMPREF1058_RS16255at 721.855 kb on - strand, within HMPREF1058_RS16255at 722.022 kb on + strand, within HMPREF1058_RS16255at 722.022 kb on + strand, within HMPREF1058_RS16255at 722.023 kb on - strand, within HMPREF1058_RS16255at 722.023 kb on - strand, within HMPREF1058_RS16255at 722.034 kb on + strand, within HMPREF1058_RS16255at 722.089 kb on - strand, within HMPREF1058_RS16255at 722.090 kb on + strand, within HMPREF1058_RS16255at 722.114 kb on - strand, within HMPREF1058_RS16255at 722.159 kb on + strand, within HMPREF1058_RS16255at 722.160 kb on - strand, within HMPREF1058_RS16255at 722.266 kb on - strand, within HMPREF1058_RS16255at 722.316 kb on + strand, within HMPREF1058_RS16255at 722.316 kb on + strand, within HMPREF1058_RS16255at 722.316 kb on + strand, within HMPREF1058_RS16255at 722.317 kb on - strand, within HMPREF1058_RS16255at 722.317 kb on - strand, within HMPREF1058_RS16255at 722.467 kb on + strandat 722.476 kb on - strandat 722.503 kb on - strandat 722.507 kb on + strandat 722.526 kb on + strandat 722.607 kb on + strandat 722.608 kb on - strandat 722.611 kb on + strandat 722.612 kb on - strandat 722.625 kb on + strandat 722.626 kb on - strandat 722.829 kb on + strand, within HMPREF1058_RS16250at 722.910 kb on + strand, within HMPREF1058_RS16250at 722.914 kb on + strand, within HMPREF1058_RS16250at 722.914 kb on + strand, within HMPREF1058_RS16250at 722.994 kb on + strand, within HMPREF1058_RS16250at 722.994 kb on + strand, within HMPREF1058_RS16250at 722.995 kb on - strand, within HMPREF1058_RS16250at 722.995 kb on - strand, within HMPREF1058_RS16250at 722.995 kb on - strand, within HMPREF1058_RS16250at 722.998 kb on + strand, within HMPREF1058_RS16250at 723.057 kb on + strand, within HMPREF1058_RS16250at 723.107 kb on - strand, within HMPREF1058_RS16250at 723.107 kb on - strand, within HMPREF1058_RS16250at 723.212 kb on - strand, within HMPREF1058_RS16250at 723.293 kb on + strand, within HMPREF1058_RS16250at 723.337 kb on - strand, within HMPREF1058_RS16250at 723.343 kb on + strand, within HMPREF1058_RS16250at 723.344 kb on - strand, within HMPREF1058_RS16250

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Xylose 10 mM (C)
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720,422 - HMPREF1058_RS16265 0.83 +0.7
720,490 + HMPREF1058_RS16265 0.86 -1.1
720,580 + -1.0
720,581 - -0.3
720,581 - +1.4
720,629 + -0.4
720,683 + -4.1
720,716 + -2.5
720,716 + -0.4
720,724 + -3.2
720,743 - -0.6
720,784 + -4.4
720,785 - +0.6
720,853 + -4.1
720,883 + -0.4
720,891 - -1.5
720,927 - +0.3
721,041 - HMPREF1058_RS16260 0.27 -1.4
721,126 - HMPREF1058_RS16260 0.48 -2.1
721,151 - HMPREF1058_RS16260 0.54 +0.1
721,169 + HMPREF1058_RS16260 0.58 -2.2
721,255 - HMPREF1058_RS16260 0.79 -1.9
721,255 - HMPREF1058_RS16260 0.79 -1.2
721,257 - HMPREF1058_RS16260 0.80 -2.9
721,257 - HMPREF1058_RS16260 0.80 -0.6
721,265 + HMPREF1058_RS16260 0.82 -2.5
721,265 + HMPREF1058_RS16260 0.82 -4.0
721,265 + HMPREF1058_RS16260 0.82 -4.4
721,269 + HMPREF1058_RS16260 0.83 -0.4
721,269 + HMPREF1058_RS16260 0.83 -2.5
721,270 - HMPREF1058_RS16260 0.83 -0.1
721,349 + -1.2
721,350 - -2.9
721,351 + -1.1
721,351 + -3.2
721,352 - -0.4
721,356 - -2.0
721,550 - HMPREF1058_RS16255 0.19 -1.6
721,699 - HMPREF1058_RS16255 0.32 -4.9
721,701 - HMPREF1058_RS16255 0.32 -0.8
721,854 + HMPREF1058_RS16255 0.45 -1.9
721,854 + HMPREF1058_RS16255 0.45 -2.2
721,855 - HMPREF1058_RS16255 0.45 -3.2
721,855 - HMPREF1058_RS16255 0.45 +0.6
721,855 - HMPREF1058_RS16255 0.45 -3.5
722,022 + HMPREF1058_RS16255 0.60 -0.8
722,022 + HMPREF1058_RS16255 0.60 -3.4
722,023 - HMPREF1058_RS16255 0.60 -2.6
722,023 - HMPREF1058_RS16255 0.60 -3.8
722,034 + HMPREF1058_RS16255 0.61 -2.8
722,089 - HMPREF1058_RS16255 0.66 +0.6
722,090 + HMPREF1058_RS16255 0.66 -1.8
722,114 - HMPREF1058_RS16255 0.68 -1.4
722,159 + HMPREF1058_RS16255 0.72 -3.7
722,160 - HMPREF1058_RS16255 0.72 -3.9
722,266 - HMPREF1058_RS16255 0.81 -3.6
722,316 + HMPREF1058_RS16255 0.86 -0.6
722,316 + HMPREF1058_RS16255 0.86 -0.2
722,316 + HMPREF1058_RS16255 0.86 -2.6
722,317 - HMPREF1058_RS16255 0.86 -1.3
722,317 - HMPREF1058_RS16255 0.86 -3.0
722,467 + +0.6
722,476 - -2.4
722,503 - -0.8
722,507 + -1.3
722,526 + -1.4
722,607 + -3.3
722,608 - -1.3
722,611 + -1.7
722,612 - -0.6
722,625 + -1.5
722,626 - -0.4
722,829 + HMPREF1058_RS16250 0.19 -1.3
722,910 + HMPREF1058_RS16250 0.24 -2.6
722,914 + HMPREF1058_RS16250 0.24 -0.1
722,914 + HMPREF1058_RS16250 0.24 -4.1
722,994 + HMPREF1058_RS16250 0.29 -0.6
722,994 + HMPREF1058_RS16250 0.29 -4.3
722,995 - HMPREF1058_RS16250 0.29 -2.8
722,995 - HMPREF1058_RS16250 0.29 -1.3
722,995 - HMPREF1058_RS16250 0.29 -1.0
722,998 + HMPREF1058_RS16250 0.30 -1.0
723,057 + HMPREF1058_RS16250 0.33 -1.8
723,107 - HMPREF1058_RS16250 0.36 -2.3
723,107 - HMPREF1058_RS16250 0.36 +1.6
723,212 - HMPREF1058_RS16250 0.42 -2.0
723,293 + HMPREF1058_RS16250 0.47 -3.6
723,337 - HMPREF1058_RS16250 0.50 -3.7
723,343 + HMPREF1058_RS16250 0.50 -0.4
723,344 - HMPREF1058_RS16250 0.50 -1.7

Or see this region's nucleotide sequence