Experiment: D-Xylose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS15945 and HMPREF1058_RS15940 are separated by 104 nucleotides HMPREF1058_RS15940 and HMPREF1058_RS15935 are separated by 80 nucleotides HMPREF1058_RS15935 and HMPREF1058_RS15930 are separated by 76 nucleotides
HMPREF1058_RS15945: HMPREF1058_RS15945 - helix-turn-helix domain-containing protein, at 801,661 to 804,480
_RS15945
HMPREF1058_RS15940: HMPREF1058_RS15940 - carboxylating nicotinate-nucleotide diphosphorylase, at 804,585 to 805,436
_RS15940
HMPREF1058_RS15935: HMPREF1058_RS15935 - 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH, at 805,517 to 805,990
_RS15935
HMPREF1058_RS15930: HMPREF1058_RS15930 - endonuclease, at 806,067 to 807,077
_RS15930
Position (kb) 804
805
806 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 803.586 kb on - strand, within HMPREF1058_RS15945 at 803.652 kb on + strand, within HMPREF1058_RS15945 at 803.653 kb on - strand, within HMPREF1058_RS15945 at 803.685 kb on + strand, within HMPREF1058_RS15945 at 803.685 kb on + strand, within HMPREF1058_RS15945 at 803.685 kb on + strand, within HMPREF1058_RS15945 at 803.686 kb on - strand, within HMPREF1058_RS15945 at 803.686 kb on - strand, within HMPREF1058_RS15945 at 803.687 kb on + strand, within HMPREF1058_RS15945 at 803.688 kb on - strand, within HMPREF1058_RS15945 at 803.706 kb on + strand, within HMPREF1058_RS15945 at 803.734 kb on - strand, within HMPREF1058_RS15945 at 803.739 kb on - strand, within HMPREF1058_RS15945 at 803.808 kb on + strand, within HMPREF1058_RS15945 at 803.809 kb on - strand, within HMPREF1058_RS15945 at 803.851 kb on + strand, within HMPREF1058_RS15945 at 803.857 kb on - strand, within HMPREF1058_RS15945 at 803.857 kb on - strand, within HMPREF1058_RS15945 at 803.870 kb on + strand, within HMPREF1058_RS15945 at 803.908 kb on - strand, within HMPREF1058_RS15945 at 803.925 kb on - strand, within HMPREF1058_RS15945 at 803.928 kb on + strand, within HMPREF1058_RS15945 at 803.929 kb on - strand, within HMPREF1058_RS15945 at 804.035 kb on - strand, within HMPREF1058_RS15945 at 804.036 kb on + strand, within HMPREF1058_RS15945 at 804.037 kb on - strand, within HMPREF1058_RS15945 at 804.063 kb on + strand, within HMPREF1058_RS15945 at 804.090 kb on - strand, within HMPREF1058_RS15945 at 804.226 kb on - strand at 804.226 kb on - strand at 804.251 kb on + strand at 804.252 kb on - strand at 804.252 kb on - strand at 804.254 kb on - strand at 804.254 kb on - strand at 804.254 kb on - strand at 804.255 kb on + strand at 804.255 kb on + strand at 804.264 kb on - strand at 804.297 kb on + strand at 804.309 kb on - strand at 804.314 kb on + strand at 804.314 kb on + strand at 804.314 kb on + strand at 804.315 kb on - strand at 804.336 kb on - strand at 804.343 kb on - strand at 804.378 kb on - strand at 804.477 kb on - strand at 804.479 kb on - strand at 804.479 kb on - strand at 804.495 kb on + strand at 804.505 kb on + strand at 804.583 kb on + strand at 805.500 kb on - strand at 805.531 kb on - strand at 805.536 kb on + strand at 805.562 kb on + strand at 805.595 kb on - strand, within HMPREF1058_RS15935 at 805.765 kb on - strand, within HMPREF1058_RS15935 at 805.804 kb on - strand, within HMPREF1058_RS15935 at 805.818 kb on + strand, within HMPREF1058_RS15935 at 805.859 kb on + strand, within HMPREF1058_RS15935 at 805.932 kb on + strand, within HMPREF1058_RS15935 at 805.957 kb on + strand at 805.958 kb on - strand at 805.977 kb on - strand at 805.994 kb on + strand at 805.995 kb on - strand at 806.027 kb on - strand at 806.100 kb on + strand at 806.113 kb on + strand at 806.125 kb on + strand at 806.141 kb on - strand at 806.203 kb on - strand, within HMPREF1058_RS15930 at 806.203 kb on - strand, within HMPREF1058_RS15930 at 806.234 kb on + strand, within HMPREF1058_RS15930 at 806.237 kb on + strand, within HMPREF1058_RS15930 at 806.238 kb on - strand, within HMPREF1058_RS15930 at 806.238 kb on - strand, within HMPREF1058_RS15930 at 806.308 kb on + strand, within HMPREF1058_RS15930 at 806.341 kb on + strand, within HMPREF1058_RS15930 at 806.359 kb on - strand, within HMPREF1058_RS15930 at 806.359 kb on - strand, within HMPREF1058_RS15930 at 806.394 kb on - strand, within HMPREF1058_RS15930 at 806.406 kb on - strand, within HMPREF1058_RS15930
Per-strain Table
Position Strand Gene LocusTag Fraction D-Xylose 10 mM (C) remove 803,586 - HMPREF1058_RS15945 0.68 -0.7 803,652 + HMPREF1058_RS15945 0.71 +1.4 803,653 - HMPREF1058_RS15945 0.71 -0.8 803,685 + HMPREF1058_RS15945 0.72 +1.1 803,685 + HMPREF1058_RS15945 0.72 +0.0 803,685 + HMPREF1058_RS15945 0.72 +0.6 803,686 - HMPREF1058_RS15945 0.72 -0.3 803,686 - HMPREF1058_RS15945 0.72 -0.0 803,687 + HMPREF1058_RS15945 0.72 +0.1 803,688 - HMPREF1058_RS15945 0.72 +0.2 803,706 + HMPREF1058_RS15945 0.73 -0.5 803,734 - HMPREF1058_RS15945 0.74 -2.1 803,739 - HMPREF1058_RS15945 0.74 +0.4 803,808 + HMPREF1058_RS15945 0.76 -1.4 803,809 - HMPREF1058_RS15945 0.76 -0.7 803,851 + HMPREF1058_RS15945 0.78 -0.2 803,857 - HMPREF1058_RS15945 0.78 -0.6 803,857 - HMPREF1058_RS15945 0.78 -1.3 803,870 + HMPREF1058_RS15945 0.78 -0.8 803,908 - HMPREF1058_RS15945 0.80 -0.2 803,925 - HMPREF1058_RS15945 0.80 +0.7 803,928 + HMPREF1058_RS15945 0.80 -0.0 803,929 - HMPREF1058_RS15945 0.80 +0.1 804,035 - HMPREF1058_RS15945 0.84 +0.5 804,036 + HMPREF1058_RS15945 0.84 +0.5 804,037 - HMPREF1058_RS15945 0.84 +0.5 804,063 + HMPREF1058_RS15945 0.85 -0.6 804,090 - HMPREF1058_RS15945 0.86 -1.1 804,226 - +0.0 804,226 - -0.0 804,251 + -0.3 804,252 - +0.1 804,252 - +0.4 804,254 - -0.4 804,254 - -1.5 804,254 - +0.3 804,255 + +1.1 804,255 + -1.1 804,264 - -0.0 804,297 + +1.1 804,309 - +1.1 804,314 + +0.2 804,314 + -0.2 804,314 + +0.9 804,315 - -1.1 804,336 - +2.0 804,343 - -0.2 804,378 - -0.7 804,477 - +0.9 804,479 - -0.2 804,479 - -0.3 804,495 + -1.1 804,505 + +2.3 804,583 + -2.0 805,500 - +0.5 805,531 - +0.1 805,536 + +0.4 805,562 + +0.6 805,595 - HMPREF1058_RS15935 0.16 +1.6 805,765 - HMPREF1058_RS15935 0.52 +1.6 805,804 - HMPREF1058_RS15935 0.61 -0.3 805,818 + HMPREF1058_RS15935 0.64 -0.4 805,859 + HMPREF1058_RS15935 0.72 -0.2 805,932 + HMPREF1058_RS15935 0.88 -0.3 805,957 + -0.3 805,958 - +1.5 805,977 - -0.3 805,994 + -0.0 805,995 - +1.6 806,027 - +0.6 806,100 + +0.1 806,113 + -0.5 806,125 + -1.5 806,141 - +2.4 806,203 - HMPREF1058_RS15930 0.13 +2.9 806,203 - HMPREF1058_RS15930 0.13 +2.2 806,234 + HMPREF1058_RS15930 0.17 +0.2 806,237 + HMPREF1058_RS15930 0.17 +1.2 806,238 - HMPREF1058_RS15930 0.17 +0.1 806,238 - HMPREF1058_RS15930 0.17 -0.8 806,308 + HMPREF1058_RS15930 0.24 +2.0 806,341 + HMPREF1058_RS15930 0.27 -0.3 806,359 - HMPREF1058_RS15930 0.29 -0.3 806,359 - HMPREF1058_RS15930 0.29 -0.3 806,394 - HMPREF1058_RS15930 0.32 +0.7 806,406 - HMPREF1058_RS15930 0.34 +0.4
Or see this region's nucleotide sequence