Experiment: D-Xylose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS15900 and HMPREF1058_RS15895 are separated by 77 nucleotides HMPREF1058_RS15895 and HMPREF1058_RS15890 are separated by 164 nucleotides HMPREF1058_RS15890 and HMPREF1058_RS15885 are separated by 89 nucleotides
HMPREF1058_RS15900: HMPREF1058_RS15900 - NADH peroxidase, at 810,606 to 811,157
_RS15900
HMPREF1058_RS15895: HMPREF1058_RS15895 - transcriptional repressor, at 811,235 to 811,645
_RS15895
HMPREF1058_RS15890: HMPREF1058_RS15890 - NAD(+) synthase, at 811,810 to 813,735
_RS15890
HMPREF1058_RS15885: HMPREF1058_RS15885 - bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB, at 813,825 to 814,943
_RS15885
Position (kb) 811
812
813
814 Strain fitness (log2 ratio) -7
-6
-5
-4
-3
-2
-1
0
1
2 at 810.831 kb on - strand, within HMPREF1058_RS15900 at 810.929 kb on + strand, within HMPREF1058_RS15900 at 810.930 kb on - strand, within HMPREF1058_RS15900 at 810.941 kb on + strand, within HMPREF1058_RS15900 at 810.942 kb on - strand, within HMPREF1058_RS15900 at 811.067 kb on + strand, within HMPREF1058_RS15900 at 811.082 kb on + strand, within HMPREF1058_RS15900 at 811.178 kb on - strand at 811.197 kb on - strand at 811.197 kb on - strand at 811.208 kb on + strand at 811.208 kb on + strand at 811.209 kb on - strand at 811.209 kb on - strand at 811.246 kb on + strand at 811.247 kb on - strand at 811.263 kb on - strand at 811.263 kb on - strand at 811.265 kb on - strand at 811.265 kb on - strand at 811.271 kb on - strand at 811.272 kb on + strand at 811.272 kb on + strand at 811.339 kb on + strand, within HMPREF1058_RS15895 at 811.343 kb on - strand, within HMPREF1058_RS15895 at 811.439 kb on - strand, within HMPREF1058_RS15895 at 811.480 kb on + strand, within HMPREF1058_RS15895 at 811.485 kb on + strand, within HMPREF1058_RS15895 at 811.485 kb on + strand, within HMPREF1058_RS15895 at 811.486 kb on - strand, within HMPREF1058_RS15895 at 811.493 kb on - strand, within HMPREF1058_RS15895 at 811.519 kb on + strand, within HMPREF1058_RS15895 at 811.520 kb on - strand, within HMPREF1058_RS15895 at 811.533 kb on + strand, within HMPREF1058_RS15895 at 811.589 kb on + strand, within HMPREF1058_RS15895 at 811.598 kb on + strand, within HMPREF1058_RS15895 at 811.617 kb on + strand at 811.618 kb on - strand at 811.696 kb on + strand at 811.717 kb on + strand at 811.755 kb on + strand at 811.790 kb on + strand at 811.792 kb on + strand at 811.792 kb on + strand at 811.794 kb on + strand at 811.794 kb on + strand at 813.743 kb on - strand at 813.778 kb on - strand at 813.800 kb on - strand at 813.800 kb on - strand at 813.804 kb on + strand at 813.831 kb on - strand at 813.831 kb on - strand at 813.831 kb on - strand at 813.850 kb on - strand at 813.921 kb on + strand at 813.922 kb on - strand at 813.926 kb on + strand at 813.960 kb on + strand, within HMPREF1058_RS15885 at 814.172 kb on + strand, within HMPREF1058_RS15885 at 814.172 kb on + strand, within HMPREF1058_RS15885 at 814.172 kb on + strand at 814.205 kb on + strand, within HMPREF1058_RS15885 at 814.208 kb on + strand, within HMPREF1058_RS15885 at 814.209 kb on - strand, within HMPREF1058_RS15885 at 814.240 kb on - strand, within HMPREF1058_RS15885 at 814.357 kb on + strand, within HMPREF1058_RS15885 at 814.358 kb on - strand, within HMPREF1058_RS15885 at 814.358 kb on - strand, within HMPREF1058_RS15885 at 814.358 kb on - strand, within HMPREF1058_RS15885 at 814.361 kb on + strand, within HMPREF1058_RS15885 at 814.397 kb on + strand, within HMPREF1058_RS15885 at 814.397 kb on + strand, within HMPREF1058_RS15885 at 814.453 kb on - strand, within HMPREF1058_RS15885 at 814.494 kb on - strand, within HMPREF1058_RS15885
Per-strain Table
Position Strand Gene LocusTag Fraction D-Xylose 10 mM (C) remove 810,831 - HMPREF1058_RS15900 0.41 +0.5 810,929 + HMPREF1058_RS15900 0.59 -0.7 810,930 - HMPREF1058_RS15900 0.59 -0.4 810,941 + HMPREF1058_RS15900 0.61 -0.9 810,942 - HMPREF1058_RS15900 0.61 +0.3 811,067 + HMPREF1058_RS15900 0.84 -1.6 811,082 + HMPREF1058_RS15900 0.86 -0.9 811,178 - +2.1 811,197 - +0.1 811,197 - +0.7 811,208 + -1.5 811,208 + -0.6 811,209 - +0.8 811,209 - +0.3 811,246 + -1.1 811,247 - -1.1 811,263 - +0.6 811,263 - -1.0 811,265 - -2.4 811,265 - -0.5 811,271 - +0.7 811,272 + -1.8 811,272 + -1.2 811,339 + HMPREF1058_RS15895 0.25 +1.1 811,343 - HMPREF1058_RS15895 0.26 -0.0 811,439 - HMPREF1058_RS15895 0.50 -0.8 811,480 + HMPREF1058_RS15895 0.60 -0.2 811,485 + HMPREF1058_RS15895 0.61 +0.1 811,485 + HMPREF1058_RS15895 0.61 -0.9 811,486 - HMPREF1058_RS15895 0.61 -1.0 811,493 - HMPREF1058_RS15895 0.63 -1.9 811,519 + HMPREF1058_RS15895 0.69 +0.6 811,520 - HMPREF1058_RS15895 0.69 -0.8 811,533 + HMPREF1058_RS15895 0.73 -1.7 811,589 + HMPREF1058_RS15895 0.86 -0.5 811,598 + HMPREF1058_RS15895 0.88 -0.3 811,617 + -0.5 811,618 - -1.9 811,696 + -1.4 811,717 + -0.8 811,755 + +0.9 811,790 + +0.9 811,792 + -1.2 811,792 + +0.2 811,794 + +0.1 811,794 + -0.3 813,743 - -1.9 813,778 - +0.7 813,800 - +0.3 813,800 - -1.7 813,804 + +1.1 813,831 - -5.2 813,831 - -7.2 813,831 - -0.5 813,850 - -3.6 813,921 + -3.0 813,922 - -2.7 813,926 + +0.3 813,960 + HMPREF1058_RS15885 0.12 -3.8 814,172 + HMPREF1058_RS15885 0.31 -4.7 814,172 + HMPREF1058_RS15885 0.31 -1.6 814,172 + +1.7 814,205 + HMPREF1058_RS15885 0.34 -0.2 814,208 + HMPREF1058_RS15885 0.34 -3.3 814,209 - HMPREF1058_RS15885 0.34 -4.0 814,240 - HMPREF1058_RS15885 0.37 -1.2 814,357 + HMPREF1058_RS15885 0.48 -3.8 814,358 - HMPREF1058_RS15885 0.48 -5.9 814,358 - HMPREF1058_RS15885 0.48 -4.5 814,358 - HMPREF1058_RS15885 0.48 -4.2 814,361 + HMPREF1058_RS15885 0.48 -2.3 814,397 + HMPREF1058_RS15885 0.51 -3.7 814,397 + HMPREF1058_RS15885 0.51 -2.9 814,453 - HMPREF1058_RS15885 0.56 -3.5 814,494 - HMPREF1058_RS15885 0.60 -2.4
Or see this region's nucleotide sequence