Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS15890

Experiment: D-Xylose 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS15900 and HMPREF1058_RS15895 are separated by 77 nucleotidesHMPREF1058_RS15895 and HMPREF1058_RS15890 are separated by 164 nucleotidesHMPREF1058_RS15890 and HMPREF1058_RS15885 are separated by 89 nucleotides HMPREF1058_RS15900: HMPREF1058_RS15900 - NADH peroxidase, at 810,606 to 811,157 _RS15900 HMPREF1058_RS15895: HMPREF1058_RS15895 - transcriptional repressor, at 811,235 to 811,645 _RS15895 HMPREF1058_RS15890: HMPREF1058_RS15890 - NAD(+) synthase, at 811,810 to 813,735 _RS15890 HMPREF1058_RS15885: HMPREF1058_RS15885 - bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB, at 813,825 to 814,943 _RS15885 Position (kb) 811 812 813 814Strain fitness (log2 ratio) -7 -6 -5 -4 -3 -2 -1 0 1 2at 810.831 kb on - strand, within HMPREF1058_RS15900at 810.929 kb on + strand, within HMPREF1058_RS15900at 810.930 kb on - strand, within HMPREF1058_RS15900at 810.941 kb on + strand, within HMPREF1058_RS15900at 810.942 kb on - strand, within HMPREF1058_RS15900at 811.067 kb on + strand, within HMPREF1058_RS15900at 811.082 kb on + strand, within HMPREF1058_RS15900at 811.178 kb on - strandat 811.197 kb on - strandat 811.197 kb on - strandat 811.208 kb on + strandat 811.208 kb on + strandat 811.209 kb on - strandat 811.209 kb on - strandat 811.246 kb on + strandat 811.247 kb on - strandat 811.263 kb on - strandat 811.263 kb on - strandat 811.265 kb on - strandat 811.265 kb on - strandat 811.271 kb on - strandat 811.272 kb on + strandat 811.272 kb on + strandat 811.339 kb on + strand, within HMPREF1058_RS15895at 811.343 kb on - strand, within HMPREF1058_RS15895at 811.439 kb on - strand, within HMPREF1058_RS15895at 811.480 kb on + strand, within HMPREF1058_RS15895at 811.485 kb on + strand, within HMPREF1058_RS15895at 811.485 kb on + strand, within HMPREF1058_RS15895at 811.486 kb on - strand, within HMPREF1058_RS15895at 811.493 kb on - strand, within HMPREF1058_RS15895at 811.519 kb on + strand, within HMPREF1058_RS15895at 811.520 kb on - strand, within HMPREF1058_RS15895at 811.533 kb on + strand, within HMPREF1058_RS15895at 811.589 kb on + strand, within HMPREF1058_RS15895at 811.598 kb on + strand, within HMPREF1058_RS15895at 811.617 kb on + strandat 811.618 kb on - strandat 811.696 kb on + strandat 811.717 kb on + strandat 811.755 kb on + strandat 811.790 kb on + strandat 811.792 kb on + strandat 811.792 kb on + strandat 811.794 kb on + strandat 811.794 kb on + strandat 813.743 kb on - strandat 813.778 kb on - strandat 813.800 kb on - strandat 813.800 kb on - strandat 813.804 kb on + strandat 813.831 kb on - strandat 813.831 kb on - strandat 813.831 kb on - strandat 813.850 kb on - strandat 813.921 kb on + strandat 813.922 kb on - strandat 813.926 kb on + strandat 813.960 kb on + strand, within HMPREF1058_RS15885at 814.172 kb on + strand, within HMPREF1058_RS15885at 814.172 kb on + strand, within HMPREF1058_RS15885at 814.172 kb on + strandat 814.205 kb on + strand, within HMPREF1058_RS15885at 814.208 kb on + strand, within HMPREF1058_RS15885at 814.209 kb on - strand, within HMPREF1058_RS15885at 814.240 kb on - strand, within HMPREF1058_RS15885at 814.357 kb on + strand, within HMPREF1058_RS15885at 814.358 kb on - strand, within HMPREF1058_RS15885at 814.358 kb on - strand, within HMPREF1058_RS15885at 814.358 kb on - strand, within HMPREF1058_RS15885at 814.361 kb on + strand, within HMPREF1058_RS15885at 814.397 kb on + strand, within HMPREF1058_RS15885at 814.397 kb on + strand, within HMPREF1058_RS15885at 814.453 kb on - strand, within HMPREF1058_RS15885at 814.494 kb on - strand, within HMPREF1058_RS15885

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Xylose 10 mM (C)
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810,831 - HMPREF1058_RS15900 0.41 +0.5
810,929 + HMPREF1058_RS15900 0.59 -0.7
810,930 - HMPREF1058_RS15900 0.59 -0.4
810,941 + HMPREF1058_RS15900 0.61 -0.9
810,942 - HMPREF1058_RS15900 0.61 +0.3
811,067 + HMPREF1058_RS15900 0.84 -1.6
811,082 + HMPREF1058_RS15900 0.86 -0.9
811,178 - +2.1
811,197 - +0.1
811,197 - +0.7
811,208 + -1.5
811,208 + -0.6
811,209 - +0.8
811,209 - +0.3
811,246 + -1.1
811,247 - -1.1
811,263 - +0.6
811,263 - -1.0
811,265 - -2.4
811,265 - -0.5
811,271 - +0.7
811,272 + -1.8
811,272 + -1.2
811,339 + HMPREF1058_RS15895 0.25 +1.1
811,343 - HMPREF1058_RS15895 0.26 -0.0
811,439 - HMPREF1058_RS15895 0.50 -0.8
811,480 + HMPREF1058_RS15895 0.60 -0.2
811,485 + HMPREF1058_RS15895 0.61 +0.1
811,485 + HMPREF1058_RS15895 0.61 -0.9
811,486 - HMPREF1058_RS15895 0.61 -1.0
811,493 - HMPREF1058_RS15895 0.63 -1.9
811,519 + HMPREF1058_RS15895 0.69 +0.6
811,520 - HMPREF1058_RS15895 0.69 -0.8
811,533 + HMPREF1058_RS15895 0.73 -1.7
811,589 + HMPREF1058_RS15895 0.86 -0.5
811,598 + HMPREF1058_RS15895 0.88 -0.3
811,617 + -0.5
811,618 - -1.9
811,696 + -1.4
811,717 + -0.8
811,755 + +0.9
811,790 + +0.9
811,792 + -1.2
811,792 + +0.2
811,794 + +0.1
811,794 + -0.3
813,743 - -1.9
813,778 - +0.7
813,800 - +0.3
813,800 - -1.7
813,804 + +1.1
813,831 - -5.2
813,831 - -7.2
813,831 - -0.5
813,850 - -3.6
813,921 + -3.0
813,922 - -2.7
813,926 + +0.3
813,960 + HMPREF1058_RS15885 0.12 -3.8
814,172 + HMPREF1058_RS15885 0.31 -4.7
814,172 + HMPREF1058_RS15885 0.31 -1.6
814,172 + +1.7
814,205 + HMPREF1058_RS15885 0.34 -0.2
814,208 + HMPREF1058_RS15885 0.34 -3.3
814,209 - HMPREF1058_RS15885 0.34 -4.0
814,240 - HMPREF1058_RS15885 0.37 -1.2
814,357 + HMPREF1058_RS15885 0.48 -3.8
814,358 - HMPREF1058_RS15885 0.48 -5.9
814,358 - HMPREF1058_RS15885 0.48 -4.5
814,358 - HMPREF1058_RS15885 0.48 -4.2
814,361 + HMPREF1058_RS15885 0.48 -2.3
814,397 + HMPREF1058_RS15885 0.51 -3.7
814,397 + HMPREF1058_RS15885 0.51 -2.9
814,453 - HMPREF1058_RS15885 0.56 -3.5
814,494 - HMPREF1058_RS15885 0.60 -2.4

Or see this region's nucleotide sequence