Experiment: D-Xylose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS11240 and HMPREF1058_RS11235 are separated by 159 nucleotides HMPREF1058_RS11235 and HMPREF1058_RS11230 are separated by 254 nucleotides HMPREF1058_RS11230 and HMPREF1058_RS11225 are separated by 102 nucleotides
HMPREF1058_RS11240: HMPREF1058_RS11240 - GNAT family N-acetyltransferase, at 424,618 to 425,145
_RS11240
HMPREF1058_RS11235: HMPREF1058_RS11235 - non-canonical purine NTP diphosphatase, at 425,305 to 425,886
_RS11235
HMPREF1058_RS11230: HMPREF1058_RS11230 - quinolinate synthase NadA, at 426,141 to 427,133
_RS11230
HMPREF1058_RS11225: HMPREF1058_RS11225 - TonB-dependent receptor, at 427,236 to 429,554
_RS11225
Position (kb) 426
427
428 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 425.141 kb on - strand at 425.141 kb on - strand at 425.146 kb on - strand at 425.200 kb on + strand at 425.201 kb on - strand at 425.231 kb on + strand at 425.257 kb on - strand at 425.302 kb on - strand at 425.321 kb on + strand at 425.388 kb on - strand, within HMPREF1058_RS11235 at 425.440 kb on - strand, within HMPREF1058_RS11235 at 425.475 kb on + strand, within HMPREF1058_RS11235 at 425.480 kb on - strand, within HMPREF1058_RS11235 at 425.496 kb on - strand, within HMPREF1058_RS11235 at 425.589 kb on + strand, within HMPREF1058_RS11235 at 425.589 kb on + strand, within HMPREF1058_RS11235 at 425.590 kb on - strand, within HMPREF1058_RS11235 at 425.590 kb on - strand, within HMPREF1058_RS11235 at 425.590 kb on - strand, within HMPREF1058_RS11235 at 425.625 kb on + strand, within HMPREF1058_RS11235 at 425.625 kb on + strand, within HMPREF1058_RS11235 at 425.668 kb on - strand, within HMPREF1058_RS11235 at 425.668 kb on - strand, within HMPREF1058_RS11235 at 425.668 kb on - strand, within HMPREF1058_RS11235 at 425.715 kb on - strand, within HMPREF1058_RS11235 at 425.885 kb on - strand at 425.885 kb on - strand at 425.889 kb on - strand at 425.892 kb on + strand at 425.898 kb on - strand at 425.898 kb on - strand at 425.942 kb on + strand at 426.054 kb on + strand at 426.055 kb on - strand at 426.088 kb on - strand at 426.109 kb on + strand at 426.109 kb on + strand at 426.110 kb on - strand at 426.112 kb on + strand at 426.126 kb on + strand at 426.144 kb on + strand at 427.188 kb on - strand at 427.256 kb on + strand at 427.263 kb on + strand at 427.268 kb on + strand at 427.269 kb on - strand at 427.303 kb on + strand at 427.304 kb on - strand at 427.307 kb on + strand at 427.369 kb on + strand at 427.370 kb on - strand at 427.474 kb on + strand, within HMPREF1058_RS11225 at 427.583 kb on - strand, within HMPREF1058_RS11225 at 427.606 kb on + strand, within HMPREF1058_RS11225 at 427.619 kb on + strand, within HMPREF1058_RS11225 at 427.621 kb on + strand, within HMPREF1058_RS11225 at 427.621 kb on + strand, within HMPREF1058_RS11225 at 427.621 kb on + strand, within HMPREF1058_RS11225 at 427.621 kb on + strand, within HMPREF1058_RS11225 at 427.622 kb on - strand, within HMPREF1058_RS11225 at 427.622 kb on - strand, within HMPREF1058_RS11225 at 427.622 kb on - strand, within HMPREF1058_RS11225 at 427.625 kb on + strand, within HMPREF1058_RS11225 at 427.625 kb on + strand, within HMPREF1058_RS11225 at 427.625 kb on + strand, within HMPREF1058_RS11225 at 427.625 kb on + strand, within HMPREF1058_RS11225 at 427.625 kb on + strand, within HMPREF1058_RS11225 at 427.625 kb on + strand, within HMPREF1058_RS11225 at 427.625 kb on + strand, within HMPREF1058_RS11225 at 427.626 kb on - strand, within HMPREF1058_RS11225 at 427.626 kb on - strand, within HMPREF1058_RS11225 at 427.658 kb on - strand, within HMPREF1058_RS11225 at 427.746 kb on + strand, within HMPREF1058_RS11225 at 427.808 kb on + strand, within HMPREF1058_RS11225 at 427.809 kb on - strand, within HMPREF1058_RS11225 at 427.823 kb on - strand, within HMPREF1058_RS11225 at 427.828 kb on + strand, within HMPREF1058_RS11225 at 427.893 kb on + strand, within HMPREF1058_RS11225 at 427.893 kb on + strand, within HMPREF1058_RS11225 at 427.952 kb on - strand, within HMPREF1058_RS11225 at 428.077 kb on + strand, within HMPREF1058_RS11225
Per-strain Table
Position Strand Gene LocusTag Fraction D-Xylose 10 mM (C) remove 425,141 - -1.6 425,141 - +0.9 425,146 - -0.4 425,200 + -0.7 425,201 - -0.6 425,231 + -0.1 425,257 - -0.4 425,302 - -0.8 425,321 + +0.6 425,388 - HMPREF1058_RS11235 0.14 -0.1 425,440 - HMPREF1058_RS11235 0.23 +0.1 425,475 + HMPREF1058_RS11235 0.29 +0.3 425,480 - HMPREF1058_RS11235 0.30 -0.3 425,496 - HMPREF1058_RS11235 0.33 +0.1 425,589 + HMPREF1058_RS11235 0.49 -0.1 425,589 + HMPREF1058_RS11235 0.49 +0.9 425,590 - HMPREF1058_RS11235 0.49 -0.5 425,590 - HMPREF1058_RS11235 0.49 -1.0 425,590 - HMPREF1058_RS11235 0.49 +0.1 425,625 + HMPREF1058_RS11235 0.55 -0.7 425,625 + HMPREF1058_RS11235 0.55 +0.2 425,668 - HMPREF1058_RS11235 0.62 +1.3 425,668 - HMPREF1058_RS11235 0.62 +0.7 425,668 - HMPREF1058_RS11235 0.62 +0.7 425,715 - HMPREF1058_RS11235 0.70 -0.9 425,885 - -0.4 425,885 - +0.0 425,889 - +0.2 425,892 + -0.9 425,898 - +0.5 425,898 - +0.7 425,942 + -0.0 426,054 + -0.7 426,055 - -0.0 426,088 - +0.1 426,109 + -0.8 426,109 + -1.4 426,110 - +0.0 426,112 + +0.5 426,126 + -0.0 426,144 + +0.2 427,188 - -0.0 427,256 + -0.2 427,263 + +0.5 427,268 + +0.0 427,269 - -0.8 427,303 + -1.3 427,304 - +0.7 427,307 + +0.9 427,369 + -0.4 427,370 - +0.7 427,474 + HMPREF1058_RS11225 0.10 -0.5 427,583 - HMPREF1058_RS11225 0.15 +0.2 427,606 + HMPREF1058_RS11225 0.16 +2.7 427,619 + HMPREF1058_RS11225 0.17 -1.0 427,621 + HMPREF1058_RS11225 0.17 -0.2 427,621 + HMPREF1058_RS11225 0.17 -0.5 427,621 + HMPREF1058_RS11225 0.17 -1.6 427,621 + HMPREF1058_RS11225 0.17 -1.5 427,622 - HMPREF1058_RS11225 0.17 -0.3 427,622 - HMPREF1058_RS11225 0.17 -0.1 427,622 - HMPREF1058_RS11225 0.17 -0.3 427,625 + HMPREF1058_RS11225 0.17 -0.2 427,625 + HMPREF1058_RS11225 0.17 +0.3 427,625 + HMPREF1058_RS11225 0.17 -0.8 427,625 + HMPREF1058_RS11225 0.17 -1.2 427,625 + HMPREF1058_RS11225 0.17 -0.6 427,625 + HMPREF1058_RS11225 0.17 -0.2 427,625 + HMPREF1058_RS11225 0.17 -0.7 427,626 - HMPREF1058_RS11225 0.17 -0.3 427,626 - HMPREF1058_RS11225 0.17 -0.1 427,658 - HMPREF1058_RS11225 0.18 -0.7 427,746 + HMPREF1058_RS11225 0.22 -2.3 427,808 + HMPREF1058_RS11225 0.25 -1.0 427,809 - HMPREF1058_RS11225 0.25 -1.2 427,823 - HMPREF1058_RS11225 0.25 +0.0 427,828 + HMPREF1058_RS11225 0.26 +0.4 427,893 + HMPREF1058_RS11225 0.28 -0.2 427,893 + HMPREF1058_RS11225 0.28 -3.1 427,952 - HMPREF1058_RS11225 0.31 -0.4 428,077 + HMPREF1058_RS11225 0.36 -0.1
Or see this region's nucleotide sequence