Experiment: D-Xylose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS11090 and HMPREF1058_RS11085 are separated by 249 nucleotides HMPREF1058_RS11085 and HMPREF1058_RS11080 are separated by 155 nucleotides HMPREF1058_RS11080 and HMPREF1058_RS11075 are separated by 75 nucleotides
HMPREF1058_RS11090: HMPREF1058_RS11090 - ATP-binding protein, at 482,097 to 483,824
_RS11090
HMPREF1058_RS11085: HMPREF1058_RS11085 - L-aspartate oxidase, at 484,074 to 485,654
_RS11085
HMPREF1058_RS11080: HMPREF1058_RS11080 - ORF6N domain-containing protein, at 485,810 to 486,370
_RS11080
HMPREF1058_RS11075: HMPREF1058_RS11075 - PH domain-containing protein, at 486,446 to 486,856
_RS11075
Position (kb) 484
485
486 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 483.268 kb on + strand, within HMPREF1058_RS11090 at 483.305 kb on + strand, within HMPREF1058_RS11090 at 483.445 kb on + strand, within HMPREF1058_RS11090 at 483.482 kb on - strand, within HMPREF1058_RS11090 at 483.541 kb on + strand, within HMPREF1058_RS11090 at 483.591 kb on + strand, within HMPREF1058_RS11090 at 483.592 kb on - strand, within HMPREF1058_RS11090 at 483.592 kb on - strand, within HMPREF1058_RS11090 at 483.630 kb on + strand, within HMPREF1058_RS11090 at 483.637 kb on + strand, within HMPREF1058_RS11090 at 483.733 kb on + strand at 483.751 kb on + strand at 483.751 kb on + strand at 483.751 kb on + strand at 483.751 kb on + strand at 483.752 kb on - strand at 483.752 kb on - strand at 483.755 kb on - strand at 483.872 kb on + strand at 483.873 kb on - strand at 484.025 kb on + strand at 484.113 kb on - strand at 485.661 kb on - strand at 485.753 kb on - strand at 485.806 kb on + strand at 485.806 kb on + strand at 485.858 kb on - strand at 485.859 kb on + strand at 485.860 kb on - strand at 485.883 kb on + strand, within HMPREF1058_RS11080 at 485.883 kb on + strand, within HMPREF1058_RS11080 at 485.902 kb on - strand, within HMPREF1058_RS11080 at 485.906 kb on - strand, within HMPREF1058_RS11080 at 486.093 kb on - strand, within HMPREF1058_RS11080 at 486.094 kb on + strand, within HMPREF1058_RS11080 at 486.094 kb on + strand, within HMPREF1058_RS11080 at 486.286 kb on + strand, within HMPREF1058_RS11080 at 486.286 kb on + strand, within HMPREF1058_RS11080 at 486.435 kb on - strand at 486.486 kb on - strand at 486.486 kb on - strand at 486.520 kb on - strand, within HMPREF1058_RS11075 at 486.536 kb on - strand, within HMPREF1058_RS11075 at 486.536 kb on - strand, within HMPREF1058_RS11075 at 486.592 kb on + strand, within HMPREF1058_RS11075 at 486.608 kb on + strand, within HMPREF1058_RS11075 at 486.609 kb on - strand, within HMPREF1058_RS11075 at 486.610 kb on + strand, within HMPREF1058_RS11075
Per-strain Table
Position Strand Gene LocusTag Fraction D-Xylose 10 mM (C) remove 483,268 + HMPREF1058_RS11090 0.68 -0.7 483,305 + HMPREF1058_RS11090 0.70 -0.2 483,445 + HMPREF1058_RS11090 0.78 -0.7 483,482 - HMPREF1058_RS11090 0.80 -0.3 483,541 + HMPREF1058_RS11090 0.84 +0.9 483,591 + HMPREF1058_RS11090 0.86 -1.8 483,592 - HMPREF1058_RS11090 0.87 +1.3 483,592 - HMPREF1058_RS11090 0.87 -1.0 483,630 + HMPREF1058_RS11090 0.89 -0.1 483,637 + HMPREF1058_RS11090 0.89 -0.5 483,733 + +0.3 483,751 + -0.3 483,751 + -2.3 483,751 + -0.6 483,751 + -0.8 483,752 - -3.1 483,752 - -0.8 483,755 - +0.1 483,872 + +0.3 483,873 - -1.3 484,025 + -0.2 484,113 - -2.5 485,661 - +0.8 485,753 - -0.1 485,806 + -0.3 485,806 + -0.6 485,858 - -0.6 485,859 + +1.2 485,860 - -0.6 485,883 + HMPREF1058_RS11080 0.13 +0.9 485,883 + HMPREF1058_RS11080 0.13 +0.3 485,902 - HMPREF1058_RS11080 0.16 +0.7 485,906 - HMPREF1058_RS11080 0.17 +0.3 486,093 - HMPREF1058_RS11080 0.50 -0.1 486,094 + HMPREF1058_RS11080 0.51 -0.1 486,094 + HMPREF1058_RS11080 0.51 -0.9 486,286 + HMPREF1058_RS11080 0.85 -0.4 486,286 + HMPREF1058_RS11080 0.85 +0.6 486,435 - +0.1 486,486 - +0.3 486,486 - -0.6 486,520 - HMPREF1058_RS11075 0.18 -1.0 486,536 - HMPREF1058_RS11075 0.22 -1.2 486,536 - HMPREF1058_RS11075 0.22 -1.5 486,592 + HMPREF1058_RS11075 0.36 -0.2 486,608 + HMPREF1058_RS11075 0.39 -0.5 486,609 - HMPREF1058_RS11075 0.40 -0.0 486,610 + HMPREF1058_RS11075 0.40 -0.2
Or see this region's nucleotide sequence