Experiment: D-Xylose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS09735 and HMPREF1058_RS09730 are separated by 13 nucleotides HMPREF1058_RS09730 and HMPREF1058_RS09725 are separated by 3 nucleotides
HMPREF1058_RS09735: HMPREF1058_RS09735 - hypothetical protein, at 807,663 to 808,679
_RS09735
HMPREF1058_RS09730: HMPREF1058_RS09730 - LicD family protein, at 808,693 to 809,490
_RS09730
HMPREF1058_RS09725: HMPREF1058_RS09725 - NAD/NADP octopine/nopaline dehydrogenase family protein, at 809,494 to 810,594
_RS09725
Position (kb) 808
809
810 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 807.783 kb on - strand, within HMPREF1058_RS09735 at 807.828 kb on - strand, within HMPREF1058_RS09735 at 807.830 kb on - strand, within HMPREF1058_RS09735 at 807.835 kb on - strand, within HMPREF1058_RS09735 at 807.850 kb on + strand, within HMPREF1058_RS09735 at 807.851 kb on - strand, within HMPREF1058_RS09735 at 807.927 kb on - strand, within HMPREF1058_RS09735 at 808.048 kb on + strand, within HMPREF1058_RS09735 at 808.048 kb on + strand, within HMPREF1058_RS09735 at 808.051 kb on + strand, within HMPREF1058_RS09735 at 808.085 kb on + strand, within HMPREF1058_RS09735 at 808.088 kb on - strand, within HMPREF1058_RS09735 at 808.088 kb on - strand, within HMPREF1058_RS09735 at 808.169 kb on - strand, within HMPREF1058_RS09735 at 808.249 kb on + strand, within HMPREF1058_RS09735 at 808.249 kb on + strand, within HMPREF1058_RS09735 at 808.250 kb on - strand, within HMPREF1058_RS09735 at 808.388 kb on + strand, within HMPREF1058_RS09735 at 808.388 kb on + strand, within HMPREF1058_RS09735 at 808.430 kb on - strand, within HMPREF1058_RS09735 at 808.450 kb on + strand, within HMPREF1058_RS09735 at 808.465 kb on + strand, within HMPREF1058_RS09735 at 808.465 kb on + strand, within HMPREF1058_RS09735 at 808.524 kb on + strand, within HMPREF1058_RS09735 at 808.663 kb on - strand at 808.729 kb on + strand at 808.730 kb on - strand at 808.730 kb on - strand at 808.730 kb on - strand at 808.757 kb on + strand at 808.757 kb on + strand at 808.758 kb on - strand at 808.758 kb on - strand at 808.766 kb on + strand at 808.766 kb on + strand at 808.858 kb on - strand, within HMPREF1058_RS09730 at 808.858 kb on - strand, within HMPREF1058_RS09730 at 808.933 kb on + strand, within HMPREF1058_RS09730 at 808.934 kb on - strand, within HMPREF1058_RS09730 at 808.956 kb on + strand, within HMPREF1058_RS09730 at 808.967 kb on + strand, within HMPREF1058_RS09730 at 808.988 kb on + strand, within HMPREF1058_RS09730 at 808.989 kb on - strand, within HMPREF1058_RS09730 at 808.990 kb on + strand, within HMPREF1058_RS09730 at 809.032 kb on + strand, within HMPREF1058_RS09730 at 809.033 kb on - strand, within HMPREF1058_RS09730 at 809.066 kb on - strand, within HMPREF1058_RS09730 at 809.098 kb on - strand, within HMPREF1058_RS09730 at 809.098 kb on - strand, within HMPREF1058_RS09730 at 809.106 kb on - strand, within HMPREF1058_RS09730 at 809.106 kb on - strand, within HMPREF1058_RS09730 at 809.106 kb on - strand, within HMPREF1058_RS09730 at 809.106 kb on - strand, within HMPREF1058_RS09730 at 809.106 kb on - strand, within HMPREF1058_RS09730 at 809.106 kb on - strand, within HMPREF1058_RS09730 at 809.127 kb on + strand, within HMPREF1058_RS09730 at 809.127 kb on + strand, within HMPREF1058_RS09730 at 809.174 kb on - strand, within HMPREF1058_RS09730 at 809.183 kb on + strand, within HMPREF1058_RS09730 at 809.185 kb on + strand, within HMPREF1058_RS09730 at 809.186 kb on - strand, within HMPREF1058_RS09730 at 809.187 kb on + strand, within HMPREF1058_RS09730 at 809.187 kb on + strand, within HMPREF1058_RS09730 at 809.344 kb on + strand, within HMPREF1058_RS09730 at 809.419 kb on + strand at 809.424 kb on + strand at 809.424 kb on + strand at 809.424 kb on + strand at 809.424 kb on + strand at 809.424 kb on + strand at 809.424 kb on + strand at 809.425 kb on - strand at 809.429 kb on - strand at 809.429 kb on - strand at 809.429 kb on - strand at 809.477 kb on - strand at 809.490 kb on + strand at 809.490 kb on + strand at 809.491 kb on - strand at 809.491 kb on - strand at 809.513 kb on + strand at 809.580 kb on + strand at 809.582 kb on + strand at 809.583 kb on - strand at 809.583 kb on - strand at 809.597 kb on - strand at 809.597 kb on - strand at 809.617 kb on + strand, within HMPREF1058_RS09725 at 809.618 kb on - strand, within HMPREF1058_RS09725 at 809.623 kb on - strand, within HMPREF1058_RS09725 at 809.788 kb on + strand, within HMPREF1058_RS09725 at 809.942 kb on + strand, within HMPREF1058_RS09725 at 809.943 kb on - strand, within HMPREF1058_RS09725 at 810.083 kb on - strand, within HMPREF1058_RS09725 at 810.083 kb on - strand, within HMPREF1058_RS09725 at 810.107 kb on - strand, within HMPREF1058_RS09725 at 810.139 kb on + strand, within HMPREF1058_RS09725 at 810.186 kb on - strand, within HMPREF1058_RS09725 at 810.247 kb on + strand, within HMPREF1058_RS09725 at 810.251 kb on - strand, within HMPREF1058_RS09725 at 810.329 kb on - strand, within HMPREF1058_RS09725 at 810.445 kb on - strand, within HMPREF1058_RS09725 at 810.469 kb on + strand, within HMPREF1058_RS09725 at 810.470 kb on - strand, within HMPREF1058_RS09725
Per-strain Table
Position Strand Gene LocusTag Fraction D-Xylose 10 mM (C) remove 807,783 - HMPREF1058_RS09735 0.12 +1.8 807,828 - HMPREF1058_RS09735 0.16 -0.0 807,830 - HMPREF1058_RS09735 0.16 -2.9 807,835 - HMPREF1058_RS09735 0.17 -1.2 807,850 + HMPREF1058_RS09735 0.18 -1.3 807,851 - HMPREF1058_RS09735 0.18 -2.4 807,927 - HMPREF1058_RS09735 0.26 -2.9 808,048 + HMPREF1058_RS09735 0.38 -2.4 808,048 + HMPREF1058_RS09735 0.38 -2.8 808,051 + HMPREF1058_RS09735 0.38 -0.9 808,085 + HMPREF1058_RS09735 0.41 -3.3 808,088 - HMPREF1058_RS09735 0.42 -0.4 808,088 - HMPREF1058_RS09735 0.42 -0.2 808,169 - HMPREF1058_RS09735 0.50 -0.8 808,249 + HMPREF1058_RS09735 0.58 -1.5 808,249 + HMPREF1058_RS09735 0.58 -1.9 808,250 - HMPREF1058_RS09735 0.58 -3.0 808,388 + HMPREF1058_RS09735 0.71 -1.2 808,388 + HMPREF1058_RS09735 0.71 +0.5 808,430 - HMPREF1058_RS09735 0.75 -1.4 808,450 + HMPREF1058_RS09735 0.77 -2.9 808,465 + HMPREF1058_RS09735 0.79 -1.2 808,465 + HMPREF1058_RS09735 0.79 -0.4 808,524 + HMPREF1058_RS09735 0.85 -2.0 808,663 - -2.2 808,729 + -1.2 808,730 - -3.2 808,730 - -1.4 808,730 - -1.8 808,757 + -2.0 808,757 + -1.1 808,758 - -0.3 808,758 - -3.8 808,766 + -0.4 808,766 + -0.9 808,858 - HMPREF1058_RS09730 0.21 -2.3 808,858 - HMPREF1058_RS09730 0.21 -0.2 808,933 + HMPREF1058_RS09730 0.30 -2.1 808,934 - HMPREF1058_RS09730 0.30 -1.2 808,956 + HMPREF1058_RS09730 0.33 -1.2 808,967 + HMPREF1058_RS09730 0.34 -0.6 808,988 + HMPREF1058_RS09730 0.37 -1.3 808,989 - HMPREF1058_RS09730 0.37 -3.6 808,990 + HMPREF1058_RS09730 0.37 -2.0 809,032 + HMPREF1058_RS09730 0.42 -1.0 809,033 - HMPREF1058_RS09730 0.43 -1.7 809,066 - HMPREF1058_RS09730 0.47 -2.5 809,098 - HMPREF1058_RS09730 0.51 -1.4 809,098 - HMPREF1058_RS09730 0.51 -0.3 809,106 - HMPREF1058_RS09730 0.52 -3.6 809,106 - HMPREF1058_RS09730 0.52 -3.0 809,106 - HMPREF1058_RS09730 0.52 -1.3 809,106 - HMPREF1058_RS09730 0.52 -2.1 809,106 - HMPREF1058_RS09730 0.52 -0.9 809,106 - HMPREF1058_RS09730 0.52 -1.5 809,127 + HMPREF1058_RS09730 0.54 -1.4 809,127 + HMPREF1058_RS09730 0.54 -4.8 809,174 - HMPREF1058_RS09730 0.60 +0.1 809,183 + HMPREF1058_RS09730 0.61 -1.8 809,185 + HMPREF1058_RS09730 0.62 -3.2 809,186 - HMPREF1058_RS09730 0.62 -2.1 809,187 + HMPREF1058_RS09730 0.62 -1.4 809,187 + HMPREF1058_RS09730 0.62 -0.6 809,344 + HMPREF1058_RS09730 0.82 -0.8 809,419 + -2.3 809,424 + -2.1 809,424 + -1.1 809,424 + -0.6 809,424 + -0.6 809,424 + +0.1 809,424 + -2.6 809,425 - -2.7 809,429 - -1.7 809,429 - -0.2 809,429 - -3.9 809,477 - -0.6 809,490 + -0.9 809,490 + -0.4 809,491 - +1.1 809,491 - -0.6 809,513 + -1.9 809,580 + -0.1 809,582 + +0.1 809,583 - -0.6 809,583 - +0.2 809,597 - -0.7 809,597 - +0.5 809,617 + HMPREF1058_RS09725 0.11 -0.2 809,618 - HMPREF1058_RS09725 0.11 -0.9 809,623 - HMPREF1058_RS09725 0.12 -0.2 809,788 + HMPREF1058_RS09725 0.27 -2.3 809,942 + HMPREF1058_RS09725 0.41 -3.1 809,943 - HMPREF1058_RS09725 0.41 -0.8 810,083 - HMPREF1058_RS09725 0.53 -1.9 810,083 - HMPREF1058_RS09725 0.53 +0.1 810,107 - HMPREF1058_RS09725 0.56 -0.2 810,139 + HMPREF1058_RS09725 0.59 -1.7 810,186 - HMPREF1058_RS09725 0.63 -0.7 810,247 + HMPREF1058_RS09725 0.68 -2.3 810,251 - HMPREF1058_RS09725 0.69 -0.3 810,329 - HMPREF1058_RS09725 0.76 -1.0 810,445 - HMPREF1058_RS09725 0.86 -0.5 810,469 + HMPREF1058_RS09725 0.89 -1.3 810,470 - HMPREF1058_RS09725 0.89 -1.0
Or see this region's nucleotide sequence