Experiment: D-Xylose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS09500 and HMPREF1058_RS09495 are separated by 355 nucleotides HMPREF1058_RS09495 and HMPREF1058_RS09490 are separated by 80 nucleotides HMPREF1058_RS09490 and HMPREF1058_RS09485 are separated by 43 nucleotides
HMPREF1058_RS09500: HMPREF1058_RS09500 - response regulator, at 865,687 to 869,727
_RS09500
HMPREF1058_RS09495: HMPREF1058_RS09495 - tRNA-Asn, at 870,083 to 870,156
_RS09495
HMPREF1058_RS09490: HMPREF1058_RS09490 - adenosine kinase, at 870,237 to 871,223
_RS09490
HMPREF1058_RS09485: HMPREF1058_RS09485 - PDZ domain-containing protein, at 871,267 to 872,961
_RS09485
Position (kb) 870
871
872 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 869.491 kb on - strand at 869.507 kb on + strand at 869.508 kb on - strand at 869.551 kb on + strand at 869.554 kb on - strand at 869.564 kb on + strand at 869.575 kb on + strand at 869.595 kb on - strand at 869.605 kb on + strand at 869.605 kb on + strand at 869.714 kb on + strand at 869.738 kb on + strand at 869.785 kb on + strand at 869.827 kb on + strand at 869.829 kb on + strand at 869.830 kb on - strand at 869.830 kb on - strand at 869.830 kb on - strand at 869.830 kb on - strand at 869.851 kb on + strand at 869.876 kb on + strand at 869.881 kb on - strand at 869.893 kb on + strand at 869.981 kb on - strand at 870.035 kb on - strand at 870.035 kb on - strand at 870.040 kb on - strand at 870.043 kb on + strand at 870.043 kb on + strand at 870.043 kb on + strand at 870.044 kb on - strand at 870.044 kb on - strand at 870.044 kb on - strand at 870.066 kb on - strand at 870.346 kb on + strand, within HMPREF1058_RS09490 at 870.347 kb on - strand, within HMPREF1058_RS09490 at 870.446 kb on + strand, within HMPREF1058_RS09490 at 870.582 kb on - strand, within HMPREF1058_RS09490 at 870.608 kb on + strand, within HMPREF1058_RS09490 at 870.609 kb on - strand, within HMPREF1058_RS09490 at 870.622 kb on - strand, within HMPREF1058_RS09490 at 870.622 kb on - strand, within HMPREF1058_RS09490 at 870.641 kb on + strand, within HMPREF1058_RS09490 at 870.682 kb on - strand, within HMPREF1058_RS09490 at 870.687 kb on + strand, within HMPREF1058_RS09490 at 870.691 kb on + strand, within HMPREF1058_RS09490 at 870.692 kb on - strand, within HMPREF1058_RS09490 at 870.692 kb on - strand, within HMPREF1058_RS09490 at 870.693 kb on + strand, within HMPREF1058_RS09490 at 870.693 kb on + strand, within HMPREF1058_RS09490 at 870.696 kb on - strand, within HMPREF1058_RS09490 at 870.697 kb on + strand, within HMPREF1058_RS09490 at 870.792 kb on + strand, within HMPREF1058_RS09490 at 870.795 kb on - strand, within HMPREF1058_RS09490 at 870.795 kb on - strand, within HMPREF1058_RS09490 at 870.798 kb on - strand, within HMPREF1058_RS09490 at 870.798 kb on - strand, within HMPREF1058_RS09490 at 870.835 kb on + strand, within HMPREF1058_RS09490 at 870.839 kb on + strand, within HMPREF1058_RS09490 at 870.885 kb on + strand, within HMPREF1058_RS09490 at 870.886 kb on - strand, within HMPREF1058_RS09490 at 870.887 kb on + strand, within HMPREF1058_RS09490 at 870.944 kb on - strand, within HMPREF1058_RS09490 at 870.956 kb on - strand, within HMPREF1058_RS09490 at 870.974 kb on + strand, within HMPREF1058_RS09490 at 871.053 kb on + strand, within HMPREF1058_RS09490 at 871.053 kb on + strand, within HMPREF1058_RS09490 at 871.056 kb on + strand, within HMPREF1058_RS09490 at 871.057 kb on - strand, within HMPREF1058_RS09490 at 871.118 kb on - strand, within HMPREF1058_RS09490 at 871.130 kb on - strand at 871.196 kb on - strand at 871.225 kb on + strand at 871.230 kb on + strand at 871.238 kb on + strand at 871.239 kb on - strand at 871.256 kb on + strand at 871.279 kb on - strand at 871.281 kb on + strand at 871.290 kb on - strand at 871.290 kb on - strand at 871.341 kb on + strand at 871.414 kb on - strand at 871.431 kb on + strand at 871.457 kb on - strand, within HMPREF1058_RS09485 at 871.457 kb on - strand, within HMPREF1058_RS09485 at 871.461 kb on + strand, within HMPREF1058_RS09485 at 871.505 kb on - strand, within HMPREF1058_RS09485 at 871.518 kb on + strand, within HMPREF1058_RS09485 at 871.519 kb on - strand, within HMPREF1058_RS09485 at 871.521 kb on + strand, within HMPREF1058_RS09485 at 871.522 kb on - strand, within HMPREF1058_RS09485 at 871.522 kb on - strand, within HMPREF1058_RS09485 at 871.577 kb on - strand, within HMPREF1058_RS09485 at 871.579 kb on + strand, within HMPREF1058_RS09485 at 871.579 kb on + strand, within HMPREF1058_RS09485 at 871.579 kb on + strand, within HMPREF1058_RS09485 at 871.580 kb on - strand, within HMPREF1058_RS09485 at 871.580 kb on - strand, within HMPREF1058_RS09485 at 871.582 kb on - strand, within HMPREF1058_RS09485 at 871.606 kb on - strand, within HMPREF1058_RS09485 at 871.640 kb on + strand, within HMPREF1058_RS09485 at 871.726 kb on + strand, within HMPREF1058_RS09485 at 871.726 kb on + strand, within HMPREF1058_RS09485 at 871.726 kb on + strand, within HMPREF1058_RS09485 at 871.789 kb on - strand, within HMPREF1058_RS09485 at 871.800 kb on + strand, within HMPREF1058_RS09485 at 871.805 kb on - strand, within HMPREF1058_RS09485 at 871.805 kb on - strand, within HMPREF1058_RS09485 at 871.836 kb on + strand, within HMPREF1058_RS09485 at 871.837 kb on - strand, within HMPREF1058_RS09485 at 871.857 kb on - strand, within HMPREF1058_RS09485 at 871.892 kb on - strand, within HMPREF1058_RS09485 at 871.894 kb on - strand, within HMPREF1058_RS09485 at 871.937 kb on + strand, within HMPREF1058_RS09485 at 871.952 kb on + strand, within HMPREF1058_RS09485 at 871.952 kb on + strand, within HMPREF1058_RS09485 at 871.981 kb on - strand, within HMPREF1058_RS09485 at 872.110 kb on + strand, within HMPREF1058_RS09485 at 872.110 kb on + strand, within HMPREF1058_RS09485 at 872.160 kb on - strand, within HMPREF1058_RS09485
Per-strain Table
Position Strand Gene LocusTag Fraction D-Xylose 10 mM (C) remove 869,491 - +0.9 869,507 + +0.9 869,508 - -1.1 869,551 + +0.0 869,554 - +1.6 869,564 + +2.7 869,575 + +0.3 869,595 - +0.0 869,605 + -0.0 869,605 + +0.5 869,714 + -1.0 869,738 + +0.6 869,785 + -0.3 869,827 + -0.4 869,829 + +0.2 869,830 - +1.3 869,830 - +0.5 869,830 - -0.3 869,830 - -0.1 869,851 + +0.6 869,876 + -1.5 869,881 - -1.6 869,893 + +0.7 869,981 - +0.0 870,035 - +1.0 870,035 - +0.4 870,040 - -1.7 870,043 + +1.1 870,043 + +0.1 870,043 + -0.7 870,044 - +0.6 870,044 - -0.2 870,044 - -0.2 870,066 - -0.3 870,346 + HMPREF1058_RS09490 0.11 -0.6 870,347 - HMPREF1058_RS09490 0.11 -2.9 870,446 + HMPREF1058_RS09490 0.21 -1.9 870,582 - HMPREF1058_RS09490 0.35 -1.5 870,608 + HMPREF1058_RS09490 0.38 +1.2 870,609 - HMPREF1058_RS09490 0.38 -3.8 870,622 - HMPREF1058_RS09490 0.39 -3.5 870,622 - HMPREF1058_RS09490 0.39 -3.7 870,641 + HMPREF1058_RS09490 0.41 -2.8 870,682 - HMPREF1058_RS09490 0.45 -1.8 870,687 + HMPREF1058_RS09490 0.46 -0.9 870,691 + HMPREF1058_RS09490 0.46 -0.5 870,692 - HMPREF1058_RS09490 0.46 -2.6 870,692 - HMPREF1058_RS09490 0.46 +2.4 870,693 + HMPREF1058_RS09490 0.46 -2.0 870,693 + HMPREF1058_RS09490 0.46 -0.5 870,696 - HMPREF1058_RS09490 0.47 -1.4 870,697 + HMPREF1058_RS09490 0.47 -0.2 870,792 + HMPREF1058_RS09490 0.56 -0.5 870,795 - HMPREF1058_RS09490 0.57 -2.1 870,795 - HMPREF1058_RS09490 0.57 -1.0 870,798 - HMPREF1058_RS09490 0.57 -2.9 870,798 - HMPREF1058_RS09490 0.57 -1.6 870,835 + HMPREF1058_RS09490 0.61 +1.4 870,839 + HMPREF1058_RS09490 0.61 -1.5 870,885 + HMPREF1058_RS09490 0.66 -3.0 870,886 - HMPREF1058_RS09490 0.66 -2.4 870,887 + HMPREF1058_RS09490 0.66 -0.9 870,944 - HMPREF1058_RS09490 0.72 -2.5 870,956 - HMPREF1058_RS09490 0.73 -1.3 870,974 + HMPREF1058_RS09490 0.75 -1.3 871,053 + HMPREF1058_RS09490 0.83 -2.3 871,053 + HMPREF1058_RS09490 0.83 -2.0 871,056 + HMPREF1058_RS09490 0.83 -2.6 871,057 - HMPREF1058_RS09490 0.83 -1.8 871,118 - HMPREF1058_RS09490 0.89 -1.2 871,130 - -1.6 871,196 - -0.6 871,225 + -1.0 871,230 + +1.3 871,238 + -0.8 871,239 - -0.2 871,256 + +0.8 871,279 - -0.7 871,281 + +0.5 871,290 - +0.8 871,290 - -0.5 871,341 + -1.8 871,414 - -1.1 871,431 + -1.1 871,457 - HMPREF1058_RS09485 0.11 +1.4 871,457 - HMPREF1058_RS09485 0.11 +0.4 871,461 + HMPREF1058_RS09485 0.11 -0.7 871,505 - HMPREF1058_RS09485 0.14 -1.5 871,518 + HMPREF1058_RS09485 0.15 -0.6 871,519 - HMPREF1058_RS09485 0.15 -0.1 871,521 + HMPREF1058_RS09485 0.15 +0.1 871,522 - HMPREF1058_RS09485 0.15 -1.9 871,522 - HMPREF1058_RS09485 0.15 -0.6 871,577 - HMPREF1058_RS09485 0.18 +1.5 871,579 + HMPREF1058_RS09485 0.18 -1.0 871,579 + HMPREF1058_RS09485 0.18 +0.1 871,579 + HMPREF1058_RS09485 0.18 -0.8 871,580 - HMPREF1058_RS09485 0.18 +1.4 871,580 - HMPREF1058_RS09485 0.18 +1.7 871,582 - HMPREF1058_RS09485 0.19 +2.4 871,606 - HMPREF1058_RS09485 0.20 +1.4 871,640 + HMPREF1058_RS09485 0.22 +1.0 871,726 + HMPREF1058_RS09485 0.27 -1.2 871,726 + HMPREF1058_RS09485 0.27 -1.7 871,726 + HMPREF1058_RS09485 0.27 -2.3 871,789 - HMPREF1058_RS09485 0.31 -0.8 871,800 + HMPREF1058_RS09485 0.31 -0.7 871,805 - HMPREF1058_RS09485 0.32 -1.9 871,805 - HMPREF1058_RS09485 0.32 -2.1 871,836 + HMPREF1058_RS09485 0.34 -0.5 871,837 - HMPREF1058_RS09485 0.34 -3.1 871,857 - HMPREF1058_RS09485 0.35 -2.2 871,892 - HMPREF1058_RS09485 0.37 -1.4 871,894 - HMPREF1058_RS09485 0.37 -0.4 871,937 + HMPREF1058_RS09485 0.40 -1.9 871,952 + HMPREF1058_RS09485 0.40 -1.3 871,952 + HMPREF1058_RS09485 0.40 -0.4 871,981 - HMPREF1058_RS09485 0.42 +0.1 872,110 + HMPREF1058_RS09485 0.50 -1.9 872,110 + HMPREF1058_RS09485 0.50 +1.2 872,160 - HMPREF1058_RS09485 0.53 +1.5
Or see this region's nucleotide sequence