Experiment: D-Xylose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS07105 and HMPREF1058_RS07100 are separated by 50 nucleotides
HMPREF1058_RS07105: HMPREF1058_RS07105 - lipid A phosphoethanolamine transferase, at 313,600 to 315,306
_RS07105
HMPREF1058_RS07100: HMPREF1058_RS07100 - D-xylose transporter XylE, at 315,357 to 316,796
_RS07100
Position (kb) 315
316
317 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 314.361 kb on - strand, within HMPREF1058_RS07105 at 314.412 kb on + strand, within HMPREF1058_RS07105 at 314.415 kb on + strand, within HMPREF1058_RS07105 at 314.415 kb on + strand, within HMPREF1058_RS07105 at 314.418 kb on + strand, within HMPREF1058_RS07105 at 314.419 kb on - strand, within HMPREF1058_RS07105 at 314.425 kb on - strand, within HMPREF1058_RS07105 at 314.425 kb on - strand, within HMPREF1058_RS07105 at 314.436 kb on + strand, within HMPREF1058_RS07105 at 314.437 kb on - strand, within HMPREF1058_RS07105 at 314.437 kb on - strand, within HMPREF1058_RS07105 at 314.467 kb on + strand, within HMPREF1058_RS07105 at 314.468 kb on - strand, within HMPREF1058_RS07105 at 314.651 kb on + strand at 314.730 kb on + strand, within HMPREF1058_RS07105 at 314.730 kb on + strand, within HMPREF1058_RS07105 at 314.737 kb on - strand, within HMPREF1058_RS07105 at 314.827 kb on + strand, within HMPREF1058_RS07105 at 314.833 kb on - strand, within HMPREF1058_RS07105 at 314.835 kb on + strand, within HMPREF1058_RS07105 at 314.835 kb on + strand, within HMPREF1058_RS07105 at 314.836 kb on - strand, within HMPREF1058_RS07105 at 314.836 kb on - strand, within HMPREF1058_RS07105 at 314.847 kb on + strand, within HMPREF1058_RS07105 at 314.879 kb on + strand, within HMPREF1058_RS07105 at 314.914 kb on + strand, within HMPREF1058_RS07105 at 314.915 kb on - strand, within HMPREF1058_RS07105 at 314.915 kb on - strand, within HMPREF1058_RS07105 at 314.990 kb on - strand, within HMPREF1058_RS07105 at 315.153 kb on + strand at 315.162 kb on + strand at 315.187 kb on + strand at 315.248 kb on + strand at 315.269 kb on + strand at 315.464 kb on + strand at 315.495 kb on + strand at 315.500 kb on + strand at 315.501 kb on - strand, within HMPREF1058_RS07100 at 315.550 kb on + strand, within HMPREF1058_RS07100 at 315.702 kb on + strand, within HMPREF1058_RS07100 at 315.703 kb on - strand, within HMPREF1058_RS07100 at 315.729 kb on - strand, within HMPREF1058_RS07100 at 315.738 kb on - strand, within HMPREF1058_RS07100 at 315.825 kb on + strand, within HMPREF1058_RS07100 at 315.825 kb on + strand, within HMPREF1058_RS07100 at 315.826 kb on - strand, within HMPREF1058_RS07100 at 315.913 kb on - strand, within HMPREF1058_RS07100 at 315.925 kb on - strand, within HMPREF1058_RS07100 at 315.980 kb on + strand, within HMPREF1058_RS07100 at 315.980 kb on + strand, within HMPREF1058_RS07100 at 316.093 kb on + strand, within HMPREF1058_RS07100 at 316.119 kb on - strand, within HMPREF1058_RS07100 at 316.119 kb on - strand, within HMPREF1058_RS07100 at 316.181 kb on + strand, within HMPREF1058_RS07100 at 316.186 kb on - strand, within HMPREF1058_RS07100 at 316.260 kb on + strand, within HMPREF1058_RS07100 at 316.264 kb on - strand, within HMPREF1058_RS07100 at 316.333 kb on + strand, within HMPREF1058_RS07100 at 316.427 kb on - strand, within HMPREF1058_RS07100 at 316.496 kb on - strand, within HMPREF1058_RS07100 at 316.496 kb on - strand, within HMPREF1058_RS07100 at 316.533 kb on - strand, within HMPREF1058_RS07100 at 316.558 kb on + strand, within HMPREF1058_RS07100 at 316.615 kb on + strand, within HMPREF1058_RS07100 at 316.653 kb on + strand at 316.653 kb on + strand at 316.764 kb on - strand at 316.764 kb on - strand at 316.794 kb on + strand at 316.794 kb on + strand at 316.838 kb on + strand at 316.911 kb on + strand at 317.136 kb on + strand at 317.262 kb on + strand at 317.346 kb on + strand at 317.347 kb on - strand at 317.347 kb on - strand at 317.351 kb on - strand at 317.371 kb on + strand at 317.372 kb on - strand at 317.492 kb on - strand at 317.503 kb on + strand at 317.511 kb on - strand at 317.546 kb on + strand at 317.645 kb on - strand at 317.649 kb on + strand at 317.650 kb on - strand at 317.651 kb on + strand at 317.721 kb on - strand at 317.721 kb on - strand at 317.774 kb on - strand at 317.774 kb on - strand at 317.774 kb on - strand at 317.778 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Xylose 10 mM (C) remove 314,361 - HMPREF1058_RS07105 0.45 +0.0 314,412 + HMPREF1058_RS07105 0.48 -0.8 314,415 + HMPREF1058_RS07105 0.48 -1.2 314,415 + HMPREF1058_RS07105 0.48 +0.2 314,418 + HMPREF1058_RS07105 0.48 -0.6 314,419 - HMPREF1058_RS07105 0.48 -0.3 314,425 - HMPREF1058_RS07105 0.48 -1.9 314,425 - HMPREF1058_RS07105 0.48 -0.8 314,436 + HMPREF1058_RS07105 0.49 -1.0 314,437 - HMPREF1058_RS07105 0.49 +0.3 314,437 - HMPREF1058_RS07105 0.49 -0.4 314,467 + HMPREF1058_RS07105 0.51 -1.8 314,468 - HMPREF1058_RS07105 0.51 -3.3 314,651 + +0.6 314,730 + HMPREF1058_RS07105 0.66 +0.0 314,730 + HMPREF1058_RS07105 0.66 -1.0 314,737 - HMPREF1058_RS07105 0.67 -1.4 314,827 + HMPREF1058_RS07105 0.72 -0.4 314,833 - HMPREF1058_RS07105 0.72 -0.6 314,835 + HMPREF1058_RS07105 0.72 -1.4 314,835 + HMPREF1058_RS07105 0.72 +0.5 314,836 - HMPREF1058_RS07105 0.72 +0.7 314,836 - HMPREF1058_RS07105 0.72 -0.7 314,847 + HMPREF1058_RS07105 0.73 -1.0 314,879 + HMPREF1058_RS07105 0.75 -1.8 314,914 + HMPREF1058_RS07105 0.77 -1.0 314,915 - HMPREF1058_RS07105 0.77 -0.3 314,915 - HMPREF1058_RS07105 0.77 +0.6 314,990 - HMPREF1058_RS07105 0.81 -1.6 315,153 + -1.8 315,162 + -1.6 315,187 + -1.9 315,248 + -2.0 315,269 + -1.1 315,464 + +0.0 315,495 + -3.9 315,500 + -2.2 315,501 - HMPREF1058_RS07100 0.10 -2.3 315,550 + HMPREF1058_RS07100 0.13 -1.5 315,702 + HMPREF1058_RS07100 0.24 -0.1 315,703 - HMPREF1058_RS07100 0.24 -0.7 315,729 - HMPREF1058_RS07100 0.26 -1.9 315,738 - HMPREF1058_RS07100 0.26 -1.3 315,825 + HMPREF1058_RS07100 0.33 -1.6 315,825 + HMPREF1058_RS07100 0.33 -0.2 315,826 - HMPREF1058_RS07100 0.33 -1.9 315,913 - HMPREF1058_RS07100 0.39 -2.3 315,925 - HMPREF1058_RS07100 0.39 -3.7 315,980 + HMPREF1058_RS07100 0.43 -2.2 315,980 + HMPREF1058_RS07100 0.43 -1.7 316,093 + HMPREF1058_RS07100 0.51 -0.6 316,119 - HMPREF1058_RS07100 0.53 -3.1 316,119 - HMPREF1058_RS07100 0.53 -0.2 316,181 + HMPREF1058_RS07100 0.57 -2.9 316,186 - HMPREF1058_RS07100 0.58 -4.6 316,260 + HMPREF1058_RS07100 0.63 -0.4 316,264 - HMPREF1058_RS07100 0.63 -0.1 316,333 + HMPREF1058_RS07100 0.68 -1.1 316,427 - HMPREF1058_RS07100 0.74 -4.2 316,496 - HMPREF1058_RS07100 0.79 -0.9 316,496 - HMPREF1058_RS07100 0.79 -1.9 316,533 - HMPREF1058_RS07100 0.82 -3.3 316,558 + HMPREF1058_RS07100 0.83 -0.2 316,615 + HMPREF1058_RS07100 0.87 -1.3 316,653 + -1.4 316,653 + -0.5 316,764 - -1.3 316,764 - +1.6 316,794 + -0.7 316,794 + -1.9 316,838 + -1.0 316,911 + +0.3 317,136 + -0.6 317,262 + +1.6 317,346 + +0.5 317,347 - +0.5 317,347 - +0.2 317,351 - -0.8 317,371 + +2.6 317,372 - -1.5 317,492 - -0.0 317,503 + -0.6 317,511 - +1.7 317,546 + +0.4 317,645 - -0.5 317,649 + +0.6 317,650 - -0.2 317,651 + -0.5 317,721 - -1.3 317,721 - -1.9 317,774 - -1.3 317,774 - -0.7 317,774 - -1.1 317,778 - -1.1
Or see this region's nucleotide sequence