Experiment: D-Xylose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS06670 and HMPREF1058_RS06665 are separated by 6 nucleotides HMPREF1058_RS06665 and HMPREF1058_RS06660 are separated by 355 nucleotides HMPREF1058_RS06660 and HMPREF1058_RS06655 are separated by 172 nucleotides
HMPREF1058_RS06670: HMPREF1058_RS06670 - sugar transferase, at 422,768 to 423,943
_RS06670
HMPREF1058_RS06665: HMPREF1058_RS06665 - response regulator transcription factor, at 423,950 to 424,315
_RS06665
HMPREF1058_RS06660: HMPREF1058_RS06660 - NUDIX hydrolase, at 424,671 to 425,405
_RS06660
HMPREF1058_RS06655: HMPREF1058_RS06655 - carbohydrate kinase, at 425,578 to 427,071
_RS06655
Position (kb) 424
425
426 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 423.724 kb on - strand, within HMPREF1058_RS06670 at 423.733 kb on - strand, within HMPREF1058_RS06670 at 423.864 kb on + strand at 423.924 kb on - strand at 423.924 kb on - strand at 423.928 kb on - strand at 423.981 kb on - strand at 424.009 kb on + strand, within HMPREF1058_RS06665 at 424.010 kb on - strand, within HMPREF1058_RS06665 at 424.010 kb on - strand, within HMPREF1058_RS06665 at 424.011 kb on + strand, within HMPREF1058_RS06665 at 424.012 kb on - strand, within HMPREF1058_RS06665 at 424.076 kb on - strand, within HMPREF1058_RS06665 at 424.087 kb on + strand, within HMPREF1058_RS06665 at 424.163 kb on + strand, within HMPREF1058_RS06665 at 424.164 kb on - strand, within HMPREF1058_RS06665 at 424.166 kb on - strand, within HMPREF1058_RS06665 at 424.179 kb on - strand, within HMPREF1058_RS06665 at 424.179 kb on - strand, within HMPREF1058_RS06665 at 424.184 kb on - strand, within HMPREF1058_RS06665 at 424.231 kb on + strand, within HMPREF1058_RS06665 at 424.232 kb on - strand, within HMPREF1058_RS06665 at 424.239 kb on + strand, within HMPREF1058_RS06665 at 424.240 kb on - strand, within HMPREF1058_RS06665 at 424.280 kb on + strand at 424.281 kb on - strand at 424.281 kb on - strand at 424.315 kb on + strand at 424.382 kb on - strand at 424.670 kb on + strand at 424.670 kb on + strand at 424.671 kb on - strand at 424.671 kb on - strand at 424.671 kb on - strand at 424.797 kb on - strand, within HMPREF1058_RS06660 at 424.823 kb on + strand, within HMPREF1058_RS06660 at 424.824 kb on - strand, within HMPREF1058_RS06660 at 424.828 kb on - strand, within HMPREF1058_RS06660 at 424.828 kb on - strand, within HMPREF1058_RS06660 at 424.911 kb on - strand, within HMPREF1058_RS06660 at 425.070 kb on + strand, within HMPREF1058_RS06660 at 425.070 kb on + strand, within HMPREF1058_RS06660 at 425.071 kb on - strand, within HMPREF1058_RS06660 at 425.155 kb on + strand, within HMPREF1058_RS06660 at 425.155 kb on + strand, within HMPREF1058_RS06660 at 425.155 kb on + strand, within HMPREF1058_RS06660 at 425.270 kb on - strand, within HMPREF1058_RS06660 at 425.305 kb on - strand, within HMPREF1058_RS06660 at 425.305 kb on - strand, within HMPREF1058_RS06660 at 425.308 kb on + strand, within HMPREF1058_RS06660 at 425.309 kb on - strand, within HMPREF1058_RS06660 at 425.309 kb on - strand, within HMPREF1058_RS06660 at 425.309 kb on - strand, within HMPREF1058_RS06660 at 425.309 kb on - strand, within HMPREF1058_RS06660 at 425.311 kb on + strand, within HMPREF1058_RS06660 at 425.311 kb on + strand, within HMPREF1058_RS06660 at 425.333 kb on - strand at 425.339 kb on - strand at 425.339 kb on - strand at 425.363 kb on + strand at 425.364 kb on - strand at 425.383 kb on - strand at 425.387 kb on + strand at 425.388 kb on - strand at 425.388 kb on - strand at 425.480 kb on + strand at 425.481 kb on - strand at 425.481 kb on - strand at 425.586 kb on - strand at 425.588 kb on + strand at 425.589 kb on - strand at 425.814 kb on + strand, within HMPREF1058_RS06655 at 425.865 kb on - strand, within HMPREF1058_RS06655 at 425.880 kb on + strand, within HMPREF1058_RS06655 at 425.880 kb on + strand, within HMPREF1058_RS06655 at 425.881 kb on - strand, within HMPREF1058_RS06655 at 425.882 kb on + strand, within HMPREF1058_RS06655 at 425.882 kb on + strand, within HMPREF1058_RS06655 at 425.883 kb on - strand, within HMPREF1058_RS06655 at 426.028 kb on - strand, within HMPREF1058_RS06655 at 426.037 kb on - strand, within HMPREF1058_RS06655 at 426.096 kb on + strand, within HMPREF1058_RS06655 at 426.236 kb on + strand, within HMPREF1058_RS06655 at 426.380 kb on + strand, within HMPREF1058_RS06655 at 426.380 kb on + strand, within HMPREF1058_RS06655 at 426.381 kb on - strand, within HMPREF1058_RS06655 at 426.381 kb on - strand, within HMPREF1058_RS06655 at 426.381 kb on - strand, within HMPREF1058_RS06655 at 426.381 kb on - strand, within HMPREF1058_RS06655 at 426.382 kb on + strand, within HMPREF1058_RS06655 at 426.383 kb on - strand, within HMPREF1058_RS06655
Per-strain Table
Position Strand Gene LocusTag Fraction D-Xylose 10 mM (C) remove 423,724 - HMPREF1058_RS06670 0.81 +0.5 423,733 - HMPREF1058_RS06670 0.82 +0.2 423,864 + -0.6 423,924 - -1.8 423,924 - -0.5 423,928 - +0.8 423,981 - -0.9 424,009 + HMPREF1058_RS06665 0.16 +2.2 424,010 - HMPREF1058_RS06665 0.16 -1.1 424,010 - HMPREF1058_RS06665 0.16 -2.0 424,011 + HMPREF1058_RS06665 0.17 +1.3 424,012 - HMPREF1058_RS06665 0.17 -1.2 424,076 - HMPREF1058_RS06665 0.34 -0.3 424,087 + HMPREF1058_RS06665 0.37 -0.7 424,163 + HMPREF1058_RS06665 0.58 +2.6 424,164 - HMPREF1058_RS06665 0.58 -0.5 424,166 - HMPREF1058_RS06665 0.59 -0.2 424,179 - HMPREF1058_RS06665 0.63 +1.8 424,179 - HMPREF1058_RS06665 0.63 -1.2 424,184 - HMPREF1058_RS06665 0.64 -1.7 424,231 + HMPREF1058_RS06665 0.77 -0.6 424,232 - HMPREF1058_RS06665 0.77 -0.0 424,239 + HMPREF1058_RS06665 0.79 -0.3 424,240 - HMPREF1058_RS06665 0.79 -0.5 424,280 + +1.1 424,281 - -0.3 424,281 - -1.5 424,315 + +0.6 424,382 - -0.8 424,670 + -0.7 424,670 + -0.7 424,671 - -0.6 424,671 - +1.6 424,671 - -0.7 424,797 - HMPREF1058_RS06660 0.17 -3.4 424,823 + HMPREF1058_RS06660 0.21 -3.7 424,824 - HMPREF1058_RS06660 0.21 -1.0 424,828 - HMPREF1058_RS06660 0.21 -1.2 424,828 - HMPREF1058_RS06660 0.21 -4.4 424,911 - HMPREF1058_RS06660 0.33 -4.2 425,070 + HMPREF1058_RS06660 0.54 -1.7 425,070 + HMPREF1058_RS06660 0.54 -3.0 425,071 - HMPREF1058_RS06660 0.54 -1.9 425,155 + HMPREF1058_RS06660 0.66 -0.1 425,155 + HMPREF1058_RS06660 0.66 -2.0 425,155 + HMPREF1058_RS06660 0.66 -1.9 425,270 - HMPREF1058_RS06660 0.81 -1.0 425,305 - HMPREF1058_RS06660 0.86 -3.4 425,305 - HMPREF1058_RS06660 0.86 -2.8 425,308 + HMPREF1058_RS06660 0.87 -0.2 425,309 - HMPREF1058_RS06660 0.87 -1.8 425,309 - HMPREF1058_RS06660 0.87 -4.5 425,309 - HMPREF1058_RS06660 0.87 -0.9 425,309 - HMPREF1058_RS06660 0.87 -1.9 425,311 + HMPREF1058_RS06660 0.87 -2.8 425,311 + HMPREF1058_RS06660 0.87 -1.8 425,333 - -0.6 425,339 - -2.7 425,339 - -2.4 425,363 + -0.7 425,364 - +0.0 425,383 - -1.6 425,387 + -0.6 425,388 - -3.4 425,388 - -3.3 425,480 + -0.8 425,481 - -3.2 425,481 - -1.6 425,586 - -4.4 425,588 + -1.9 425,589 - -2.0 425,814 + HMPREF1058_RS06655 0.16 +1.6 425,865 - HMPREF1058_RS06655 0.19 -1.3 425,880 + HMPREF1058_RS06655 0.20 -2.4 425,880 + HMPREF1058_RS06655 0.20 -2.9 425,881 - HMPREF1058_RS06655 0.20 -3.7 425,882 + HMPREF1058_RS06655 0.20 -3.4 425,882 + HMPREF1058_RS06655 0.20 -2.6 425,883 - HMPREF1058_RS06655 0.20 -4.6 426,028 - HMPREF1058_RS06655 0.30 -4.2 426,037 - HMPREF1058_RS06655 0.31 -3.8 426,096 + HMPREF1058_RS06655 0.35 -5.6 426,236 + HMPREF1058_RS06655 0.44 -2.6 426,380 + HMPREF1058_RS06655 0.54 -2.4 426,380 + HMPREF1058_RS06655 0.54 +1.0 426,381 - HMPREF1058_RS06655 0.54 -3.4 426,381 - HMPREF1058_RS06655 0.54 -2.9 426,381 - HMPREF1058_RS06655 0.54 -2.2 426,381 - HMPREF1058_RS06655 0.54 -2.0 426,382 + HMPREF1058_RS06655 0.54 +0.6 426,383 - HMPREF1058_RS06655 0.54 -2.3
Or see this region's nucleotide sequence