Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS06655

Experiment: D-Xylose 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS06660 and HMPREF1058_RS06655 are separated by 172 nucleotidesHMPREF1058_RS06655 and HMPREF1058_RS06650 are separated by 91 nucleotides HMPREF1058_RS06660: HMPREF1058_RS06660 - NUDIX hydrolase, at 424,671 to 425,405 _RS06660 HMPREF1058_RS06655: HMPREF1058_RS06655 - carbohydrate kinase, at 425,578 to 427,071 _RS06655 HMPREF1058_RS06650: HMPREF1058_RS06650 - xylose isomerase, at 427,163 to 428,479 _RS06650 Position (kb) 425 426 427 428Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 424.670 kb on + strandat 424.670 kb on + strandat 424.671 kb on - strandat 424.671 kb on - strandat 424.797 kb on - strand, within HMPREF1058_RS06660at 424.823 kb on + strand, within HMPREF1058_RS06660at 424.824 kb on - strand, within HMPREF1058_RS06660at 424.828 kb on - strand, within HMPREF1058_RS06660at 424.828 kb on - strand, within HMPREF1058_RS06660at 424.911 kb on - strand, within HMPREF1058_RS06660at 425.070 kb on + strand, within HMPREF1058_RS06660at 425.070 kb on + strand, within HMPREF1058_RS06660at 425.071 kb on - strand, within HMPREF1058_RS06660at 425.155 kb on + strand, within HMPREF1058_RS06660at 425.155 kb on + strand, within HMPREF1058_RS06660at 425.155 kb on + strand, within HMPREF1058_RS06660at 425.270 kb on - strand, within HMPREF1058_RS06660at 425.305 kb on - strand, within HMPREF1058_RS06660at 425.305 kb on - strand, within HMPREF1058_RS06660at 425.308 kb on + strand, within HMPREF1058_RS06660at 425.309 kb on - strand, within HMPREF1058_RS06660at 425.309 kb on - strand, within HMPREF1058_RS06660at 425.309 kb on - strand, within HMPREF1058_RS06660at 425.309 kb on - strand, within HMPREF1058_RS06660at 425.311 kb on + strand, within HMPREF1058_RS06660at 425.311 kb on + strand, within HMPREF1058_RS06660at 425.333 kb on - strandat 425.339 kb on - strandat 425.339 kb on - strandat 425.363 kb on + strandat 425.364 kb on - strandat 425.383 kb on - strandat 425.387 kb on + strandat 425.388 kb on - strandat 425.388 kb on - strandat 425.480 kb on + strandat 425.481 kb on - strandat 425.481 kb on - strandat 425.586 kb on - strandat 425.588 kb on + strandat 425.589 kb on - strandat 425.814 kb on + strand, within HMPREF1058_RS06655at 425.865 kb on - strand, within HMPREF1058_RS06655at 425.880 kb on + strand, within HMPREF1058_RS06655at 425.880 kb on + strand, within HMPREF1058_RS06655at 425.881 kb on - strand, within HMPREF1058_RS06655at 425.882 kb on + strand, within HMPREF1058_RS06655at 425.882 kb on + strand, within HMPREF1058_RS06655at 425.883 kb on - strand, within HMPREF1058_RS06655at 426.028 kb on - strand, within HMPREF1058_RS06655at 426.037 kb on - strand, within HMPREF1058_RS06655at 426.096 kb on + strand, within HMPREF1058_RS06655at 426.236 kb on + strand, within HMPREF1058_RS06655at 426.380 kb on + strand, within HMPREF1058_RS06655at 426.380 kb on + strand, within HMPREF1058_RS06655at 426.381 kb on - strand, within HMPREF1058_RS06655at 426.381 kb on - strand, within HMPREF1058_RS06655at 426.381 kb on - strand, within HMPREF1058_RS06655at 426.381 kb on - strand, within HMPREF1058_RS06655at 426.382 kb on + strand, within HMPREF1058_RS06655at 426.383 kb on - strand, within HMPREF1058_RS06655at 426.443 kb on + strand, within HMPREF1058_RS06655at 426.526 kb on - strand, within HMPREF1058_RS06655at 426.538 kb on + strand, within HMPREF1058_RS06655at 426.551 kb on - strand, within HMPREF1058_RS06655at 426.558 kb on + strand, within HMPREF1058_RS06655at 426.636 kb on + strand, within HMPREF1058_RS06655at 426.666 kb on + strand, within HMPREF1058_RS06655at 426.666 kb on + strand, within HMPREF1058_RS06655at 426.666 kb on + strand, within HMPREF1058_RS06655at 426.668 kb on + strand, within HMPREF1058_RS06655at 426.668 kb on + strand, within HMPREF1058_RS06655at 426.669 kb on - strand, within HMPREF1058_RS06655at 426.669 kb on - strand, within HMPREF1058_RS06655at 426.669 kb on - strand, within HMPREF1058_RS06655at 426.705 kb on + strand, within HMPREF1058_RS06655at 426.706 kb on - strand, within HMPREF1058_RS06655at 426.814 kb on - strand, within HMPREF1058_RS06655at 426.814 kb on - strand, within HMPREF1058_RS06655at 426.828 kb on + strand, within HMPREF1058_RS06655at 426.866 kb on + strand, within HMPREF1058_RS06655at 426.934 kb on + strandat 426.937 kb on - strandat 427.024 kb on + strandat 427.025 kb on - strandat 427.025 kb on - strandat 427.142 kb on + strandat 427.192 kb on - strandat 427.247 kb on + strandat 427.318 kb on + strand, within HMPREF1058_RS06650at 427.318 kb on + strand, within HMPREF1058_RS06650at 427.318 kb on + strand, within HMPREF1058_RS06650at 427.461 kb on - strand, within HMPREF1058_RS06650at 427.512 kb on - strand, within HMPREF1058_RS06650at 427.533 kb on + strand, within HMPREF1058_RS06650at 427.617 kb on - strand, within HMPREF1058_RS06650at 427.748 kb on + strand, within HMPREF1058_RS06650at 427.750 kb on + strand, within HMPREF1058_RS06650at 427.750 kb on + strandat 427.843 kb on + strand, within HMPREF1058_RS06650at 427.844 kb on - strand, within HMPREF1058_RS06650at 427.895 kb on + strand, within HMPREF1058_RS06650at 427.985 kb on - strand, within HMPREF1058_RS06650at 428.000 kb on - strand, within HMPREF1058_RS06650

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Xylose 10 mM (C)
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424,670 + -0.7
424,670 + -0.7
424,671 - -0.6
424,671 - -0.7
424,797 - HMPREF1058_RS06660 0.17 -3.4
424,823 + HMPREF1058_RS06660 0.21 -3.7
424,824 - HMPREF1058_RS06660 0.21 -1.0
424,828 - HMPREF1058_RS06660 0.21 -1.2
424,828 - HMPREF1058_RS06660 0.21 -4.4
424,911 - HMPREF1058_RS06660 0.33 -4.2
425,070 + HMPREF1058_RS06660 0.54 -1.7
425,070 + HMPREF1058_RS06660 0.54 -3.0
425,071 - HMPREF1058_RS06660 0.54 -1.9
425,155 + HMPREF1058_RS06660 0.66 -0.1
425,155 + HMPREF1058_RS06660 0.66 -2.0
425,155 + HMPREF1058_RS06660 0.66 -1.9
425,270 - HMPREF1058_RS06660 0.81 -1.0
425,305 - HMPREF1058_RS06660 0.86 -3.4
425,305 - HMPREF1058_RS06660 0.86 -2.8
425,308 + HMPREF1058_RS06660 0.87 -0.2
425,309 - HMPREF1058_RS06660 0.87 -1.8
425,309 - HMPREF1058_RS06660 0.87 -4.5
425,309 - HMPREF1058_RS06660 0.87 -0.9
425,309 - HMPREF1058_RS06660 0.87 -1.9
425,311 + HMPREF1058_RS06660 0.87 -2.8
425,311 + HMPREF1058_RS06660 0.87 -1.8
425,333 - -0.6
425,339 - -2.7
425,339 - -2.4
425,363 + -0.7
425,364 - +0.0
425,383 - -1.6
425,387 + -0.6
425,388 - -3.4
425,388 - -3.3
425,480 + -0.8
425,481 - -3.2
425,481 - -1.6
425,586 - -4.4
425,588 + -1.9
425,589 - -2.0
425,814 + HMPREF1058_RS06655 0.16 +1.6
425,865 - HMPREF1058_RS06655 0.19 -1.3
425,880 + HMPREF1058_RS06655 0.20 -2.4
425,880 + HMPREF1058_RS06655 0.20 -2.9
425,881 - HMPREF1058_RS06655 0.20 -3.7
425,882 + HMPREF1058_RS06655 0.20 -3.4
425,882 + HMPREF1058_RS06655 0.20 -2.6
425,883 - HMPREF1058_RS06655 0.20 -4.6
426,028 - HMPREF1058_RS06655 0.30 -4.2
426,037 - HMPREF1058_RS06655 0.31 -3.8
426,096 + HMPREF1058_RS06655 0.35 -5.6
426,236 + HMPREF1058_RS06655 0.44 -2.6
426,380 + HMPREF1058_RS06655 0.54 -2.4
426,380 + HMPREF1058_RS06655 0.54 +1.0
426,381 - HMPREF1058_RS06655 0.54 -3.4
426,381 - HMPREF1058_RS06655 0.54 -2.9
426,381 - HMPREF1058_RS06655 0.54 -2.2
426,381 - HMPREF1058_RS06655 0.54 -2.0
426,382 + HMPREF1058_RS06655 0.54 +0.6
426,383 - HMPREF1058_RS06655 0.54 -2.3
426,443 + HMPREF1058_RS06655 0.58 -1.9
426,526 - HMPREF1058_RS06655 0.63 -3.3
426,538 + HMPREF1058_RS06655 0.64 +0.0
426,551 - HMPREF1058_RS06655 0.65 -4.4
426,558 + HMPREF1058_RS06655 0.66 -4.9
426,636 + HMPREF1058_RS06655 0.71 -3.4
426,666 + HMPREF1058_RS06655 0.73 -3.6
426,666 + HMPREF1058_RS06655 0.73 -1.9
426,666 + HMPREF1058_RS06655 0.73 -0.9
426,668 + HMPREF1058_RS06655 0.73 -2.4
426,668 + HMPREF1058_RS06655 0.73 -4.3
426,669 - HMPREF1058_RS06655 0.73 -3.5
426,669 - HMPREF1058_RS06655 0.73 -3.4
426,669 - HMPREF1058_RS06655 0.73 -4.0
426,705 + HMPREF1058_RS06655 0.75 -3.3
426,706 - HMPREF1058_RS06655 0.76 -0.1
426,814 - HMPREF1058_RS06655 0.83 -2.4
426,814 - HMPREF1058_RS06655 0.83 +0.6
426,828 + HMPREF1058_RS06655 0.84 -2.8
426,866 + HMPREF1058_RS06655 0.86 -1.1
426,934 + -1.0
426,937 - -2.3
427,024 + -3.6
427,025 - -3.8
427,025 - -4.7
427,142 + -1.6
427,192 - +0.0
427,247 + -1.9
427,318 + HMPREF1058_RS06650 0.12 -3.1
427,318 + HMPREF1058_RS06650 0.12 +0.6
427,318 + HMPREF1058_RS06650 0.12 -2.2
427,461 - HMPREF1058_RS06650 0.23 +0.3
427,512 - HMPREF1058_RS06650 0.26 -2.4
427,533 + HMPREF1058_RS06650 0.28 -1.1
427,617 - HMPREF1058_RS06650 0.34 -1.5
427,748 + HMPREF1058_RS06650 0.44 -1.0
427,750 + HMPREF1058_RS06650 0.45 -1.4
427,750 + +1.6
427,843 + HMPREF1058_RS06650 0.52 -1.6
427,844 - HMPREF1058_RS06650 0.52 -3.3
427,895 + HMPREF1058_RS06650 0.56 -4.8
427,985 - HMPREF1058_RS06650 0.62 -1.4
428,000 - HMPREF1058_RS06650 0.64 -1.6

Or see this region's nucleotide sequence