Experiment: D-Xylose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS06335 and HMPREF1058_RS06330 overlap by 4 nucleotides HMPREF1058_RS06330 and HMPREF1058_RS06325 are separated by 14 nucleotides HMPREF1058_RS06325 and HMPREF1058_RS06320 are separated by 18 nucleotides
HMPREF1058_RS06335: HMPREF1058_RS06335 - RnfABCDGE type electron transport complex subunit D, at 504,236 to 505,225
_RS06335
HMPREF1058_RS06330: HMPREF1058_RS06330 - RnfABCDGE type electron transport complex subunit G, at 505,222 to 506,016
_RS06330
HMPREF1058_RS06325: HMPREF1058_RS06325 - electron transport complex subunit E, at 506,031 to 506,615
_RS06325
HMPREF1058_RS06320: HMPREF1058_RS06320 - electron transport complex subunit RsxA, at 506,634 to 507,236
_RS06320
Position (kb) 505
506
507 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 504.236 kb on - strand at 504.236 kb on - strand at 504.236 kb on - strand at 504.250 kb on - strand at 504.252 kb on + strand at 504.255 kb on + strand at 504.291 kb on + strand at 504.291 kb on + strand at 504.292 kb on - strand at 504.301 kb on + strand at 504.302 kb on - strand at 504.302 kb on - strand at 504.305 kb on + strand at 504.306 kb on - strand at 504.306 kb on - strand at 504.327 kb on + strand at 504.454 kb on + strand, within HMPREF1058_RS06335 at 504.478 kb on + strand, within HMPREF1058_RS06335 at 504.480 kb on + strand, within HMPREF1058_RS06335 at 504.481 kb on - strand, within HMPREF1058_RS06335 at 504.692 kb on + strand, within HMPREF1058_RS06335 at 504.715 kb on + strand, within HMPREF1058_RS06335 at 504.766 kb on - strand, within HMPREF1058_RS06335 at 504.786 kb on + strand, within HMPREF1058_RS06335 at 504.786 kb on + strand, within HMPREF1058_RS06335 at 504.787 kb on - strand, within HMPREF1058_RS06335 at 504.787 kb on - strand, within HMPREF1058_RS06335 at 504.819 kb on + strand, within HMPREF1058_RS06335 at 504.862 kb on + strand, within HMPREF1058_RS06335 at 504.862 kb on + strand, within HMPREF1058_RS06335 at 504.862 kb on + strand, within HMPREF1058_RS06335 at 504.862 kb on + strand, within HMPREF1058_RS06335 at 504.862 kb on + strand, within HMPREF1058_RS06335 at 504.862 kb on + strand, within HMPREF1058_RS06335 at 504.863 kb on - strand, within HMPREF1058_RS06335 at 504.863 kb on - strand, within HMPREF1058_RS06335 at 504.863 kb on - strand, within HMPREF1058_RS06335 at 504.901 kb on - strand, within HMPREF1058_RS06335 at 504.919 kb on - strand, within HMPREF1058_RS06335 at 504.919 kb on - strand, within HMPREF1058_RS06335 at 504.988 kb on + strand, within HMPREF1058_RS06335 at 504.988 kb on + strand, within HMPREF1058_RS06335 at 505.031 kb on + strand, within HMPREF1058_RS06335 at 505.031 kb on + strand, within HMPREF1058_RS06335 at 505.036 kb on + strand, within HMPREF1058_RS06335 at 505.036 kb on + strand, within HMPREF1058_RS06335 at 505.036 kb on + strand, within HMPREF1058_RS06335 at 505.037 kb on - strand, within HMPREF1058_RS06335 at 505.037 kb on - strand, within HMPREF1058_RS06335 at 505.054 kb on + strand, within HMPREF1058_RS06335 at 505.067 kb on - strand, within HMPREF1058_RS06335 at 505.067 kb on - strand, within HMPREF1058_RS06335 at 505.133 kb on - strand at 505.147 kb on - strand at 505.184 kb on + strand at 505.189 kb on + strand at 505.195 kb on + strand at 505.443 kb on + strand, within HMPREF1058_RS06330 at 505.444 kb on - strand, within HMPREF1058_RS06330 at 505.444 kb on - strand, within HMPREF1058_RS06330 at 505.452 kb on + strand, within HMPREF1058_RS06330 at 505.557 kb on + strand, within HMPREF1058_RS06330 at 505.558 kb on - strand, within HMPREF1058_RS06330 at 505.568 kb on - strand, within HMPREF1058_RS06330 at 505.568 kb on - strand, within HMPREF1058_RS06330 at 505.627 kb on - strand, within HMPREF1058_RS06330 at 505.656 kb on + strand, within HMPREF1058_RS06330 at 505.685 kb on + strand, within HMPREF1058_RS06330 at 505.779 kb on + strand, within HMPREF1058_RS06330 at 505.779 kb on + strand, within HMPREF1058_RS06330 at 505.780 kb on - strand, within HMPREF1058_RS06330 at 505.972 kb on - strand at 506.030 kb on + strand at 506.108 kb on + strand, within HMPREF1058_RS06325 at 506.191 kb on + strand, within HMPREF1058_RS06325 at 506.201 kb on + strand, within HMPREF1058_RS06325 at 506.231 kb on + strand, within HMPREF1058_RS06325 at 506.232 kb on - strand, within HMPREF1058_RS06325 at 506.295 kb on + strand, within HMPREF1058_RS06325 at 506.330 kb on + strand, within HMPREF1058_RS06325 at 506.470 kb on + strand, within HMPREF1058_RS06325 at 506.471 kb on - strand, within HMPREF1058_RS06325 at 506.598 kb on - strand at 506.641 kb on - strand at 506.641 kb on - strand at 506.643 kb on - strand at 506.644 kb on + strand at 506.644 kb on + strand at 506.651 kb on - strand at 506.655 kb on - strand at 506.744 kb on + strand, within HMPREF1058_RS06320 at 506.795 kb on + strand, within HMPREF1058_RS06320 at 506.799 kb on + strand, within HMPREF1058_RS06320 at 506.799 kb on + strand, within HMPREF1058_RS06320 at 506.799 kb on + strand, within HMPREF1058_RS06320 at 506.800 kb on - strand, within HMPREF1058_RS06320 at 506.805 kb on - strand, within HMPREF1058_RS06320 at 506.885 kb on - strand, within HMPREF1058_RS06320 at 506.914 kb on + strand, within HMPREF1058_RS06320 at 506.915 kb on - strand, within HMPREF1058_RS06320
Per-strain Table
Position Strand Gene LocusTag Fraction D-Xylose 10 mM (C) remove 504,236 - +0.3 504,236 - -0.9 504,236 - -2.0 504,250 - +1.6 504,252 + -1.3 504,255 + +1.3 504,291 + -1.2 504,291 + -2.4 504,292 - -0.9 504,301 + -2.2 504,302 - -0.4 504,302 - -1.1 504,305 + -1.1 504,306 - -0.7 504,306 - -1.1 504,327 + -1.6 504,454 + HMPREF1058_RS06335 0.22 -2.3 504,478 + HMPREF1058_RS06335 0.24 -2.5 504,480 + HMPREF1058_RS06335 0.25 -1.3 504,481 - HMPREF1058_RS06335 0.25 -2.6 504,692 + HMPREF1058_RS06335 0.46 -1.0 504,715 + HMPREF1058_RS06335 0.48 +0.8 504,766 - HMPREF1058_RS06335 0.54 +0.6 504,786 + HMPREF1058_RS06335 0.56 -2.0 504,786 + HMPREF1058_RS06335 0.56 -1.4 504,787 - HMPREF1058_RS06335 0.56 -1.5 504,787 - HMPREF1058_RS06335 0.56 -2.5 504,819 + HMPREF1058_RS06335 0.59 -1.6 504,862 + HMPREF1058_RS06335 0.63 -1.3 504,862 + HMPREF1058_RS06335 0.63 -1.0 504,862 + HMPREF1058_RS06335 0.63 -0.7 504,862 + HMPREF1058_RS06335 0.63 +0.5 504,862 + HMPREF1058_RS06335 0.63 +0.0 504,862 + HMPREF1058_RS06335 0.63 -1.4 504,863 - HMPREF1058_RS06335 0.63 -3.6 504,863 - HMPREF1058_RS06335 0.63 +2.6 504,863 - HMPREF1058_RS06335 0.63 -0.9 504,901 - HMPREF1058_RS06335 0.67 -2.2 504,919 - HMPREF1058_RS06335 0.69 -1.6 504,919 - HMPREF1058_RS06335 0.69 +0.0 504,988 + HMPREF1058_RS06335 0.76 -0.9 504,988 + HMPREF1058_RS06335 0.76 -2.1 505,031 + HMPREF1058_RS06335 0.80 -1.1 505,031 + HMPREF1058_RS06335 0.80 -0.6 505,036 + HMPREF1058_RS06335 0.81 -0.4 505,036 + HMPREF1058_RS06335 0.81 +0.7 505,036 + HMPREF1058_RS06335 0.81 -1.6 505,037 - HMPREF1058_RS06335 0.81 +0.5 505,037 - HMPREF1058_RS06335 0.81 -0.9 505,054 + HMPREF1058_RS06335 0.83 -3.0 505,067 - HMPREF1058_RS06335 0.84 +0.6 505,067 - HMPREF1058_RS06335 0.84 -1.6 505,133 - +0.0 505,147 - -0.1 505,184 + -2.4 505,189 + +0.3 505,195 + -2.4 505,443 + HMPREF1058_RS06330 0.28 -0.9 505,444 - HMPREF1058_RS06330 0.28 -1.1 505,444 - HMPREF1058_RS06330 0.28 -0.9 505,452 + HMPREF1058_RS06330 0.29 -1.6 505,557 + HMPREF1058_RS06330 0.42 -0.9 505,558 - HMPREF1058_RS06330 0.42 -2.3 505,568 - HMPREF1058_RS06330 0.44 -1.2 505,568 - HMPREF1058_RS06330 0.44 -1.1 505,627 - HMPREF1058_RS06330 0.51 -0.9 505,656 + HMPREF1058_RS06330 0.55 -1.4 505,685 + HMPREF1058_RS06330 0.58 -2.2 505,779 + HMPREF1058_RS06330 0.70 -2.8 505,779 + HMPREF1058_RS06330 0.70 -0.1 505,780 - HMPREF1058_RS06330 0.70 -2.0 505,972 - -0.6 506,030 + +1.0 506,108 + HMPREF1058_RS06325 0.13 +0.3 506,191 + HMPREF1058_RS06325 0.27 -2.0 506,201 + HMPREF1058_RS06325 0.29 -1.0 506,231 + HMPREF1058_RS06325 0.34 -1.4 506,232 - HMPREF1058_RS06325 0.34 +1.8 506,295 + HMPREF1058_RS06325 0.45 +1.4 506,330 + HMPREF1058_RS06325 0.51 -2.7 506,470 + HMPREF1058_RS06325 0.75 -2.2 506,471 - HMPREF1058_RS06325 0.75 +1.0 506,598 - +0.6 506,641 - -0.4 506,641 - -1.3 506,643 - -2.4 506,644 + -0.9 506,644 + -1.0 506,651 - -3.5 506,655 - -2.0 506,744 + HMPREF1058_RS06320 0.18 -1.4 506,795 + HMPREF1058_RS06320 0.27 -2.7 506,799 + HMPREF1058_RS06320 0.27 -0.9 506,799 + HMPREF1058_RS06320 0.27 -1.7 506,799 + HMPREF1058_RS06320 0.27 -1.9 506,800 - HMPREF1058_RS06320 0.28 -0.7 506,805 - HMPREF1058_RS06320 0.28 -1.1 506,885 - HMPREF1058_RS06320 0.42 -1.4 506,914 + HMPREF1058_RS06320 0.46 -1.4 506,915 - HMPREF1058_RS06320 0.47 -0.2
Or see this region's nucleotide sequence