Experiment: D-Xylose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS02070 and HMPREF1058_RS02065 are separated by 72 nucleotides HMPREF1058_RS02065 and HMPREF1058_RS02060 are separated by 136 nucleotides
HMPREF1058_RS02070: HMPREF1058_RS02070 - efflux RND transporter permease subunit, at 296,395 to 299,565
_RS02070
HMPREF1058_RS02065: HMPREF1058_RS02065 - hypothetical protein, at 299,638 to 299,931
_RS02065
HMPREF1058_RS02060: HMPREF1058_RS02060 - SGNH/GDSL hydrolase family protein, at 300,068 to 301,435
_RS02060
Position (kb) 299
300 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 298.675 kb on + strand, within HMPREF1058_RS02070 at 298.676 kb on - strand, within HMPREF1058_RS02070 at 298.676 kb on - strand, within HMPREF1058_RS02070 at 298.680 kb on + strand, within HMPREF1058_RS02070 at 298.759 kb on - strand, within HMPREF1058_RS02070 at 298.812 kb on + strand, within HMPREF1058_RS02070 at 298.825 kb on - strand, within HMPREF1058_RS02070 at 298.839 kb on + strand, within HMPREF1058_RS02070 at 298.840 kb on - strand, within HMPREF1058_RS02070 at 298.840 kb on - strand, within HMPREF1058_RS02070 at 298.851 kb on - strand, within HMPREF1058_RS02070 at 298.881 kb on + strand, within HMPREF1058_RS02070 at 298.906 kb on - strand, within HMPREF1058_RS02070 at 298.961 kb on - strand, within HMPREF1058_RS02070 at 299.017 kb on - strand, within HMPREF1058_RS02070 at 299.017 kb on - strand, within HMPREF1058_RS02070 at 299.018 kb on + strand, within HMPREF1058_RS02070 at 299.019 kb on - strand, within HMPREF1058_RS02070 at 299.019 kb on - strand, within HMPREF1058_RS02070 at 299.025 kb on - strand, within HMPREF1058_RS02070 at 299.076 kb on + strand, within HMPREF1058_RS02070 at 299.122 kb on + strand, within HMPREF1058_RS02070 at 299.137 kb on - strand, within HMPREF1058_RS02070 at 299.166 kb on + strand, within HMPREF1058_RS02070 at 299.215 kb on + strand, within HMPREF1058_RS02070 at 299.216 kb on - strand, within HMPREF1058_RS02070 at 299.220 kb on + strand, within HMPREF1058_RS02070 at 299.220 kb on + strand, within HMPREF1058_RS02070 at 299.220 kb on + strand, within HMPREF1058_RS02070 at 299.221 kb on - strand, within HMPREF1058_RS02070 at 299.221 kb on - strand, within HMPREF1058_RS02070 at 299.225 kb on + strand, within HMPREF1058_RS02070 at 299.412 kb on + strand at 299.518 kb on + strand at 299.532 kb on + strand at 299.571 kb on - strand at 299.572 kb on + strand at 299.573 kb on - strand at 299.619 kb on + strand at 299.683 kb on - strand, within HMPREF1058_RS02065 at 299.683 kb on - strand, within HMPREF1058_RS02065 at 300.006 kb on + strand at 300.007 kb on - strand at 300.016 kb on + strand at 300.017 kb on - strand at 300.017 kb on - strand at 300.059 kb on + strand at 300.062 kb on - strand at 300.077 kb on + strand at 300.077 kb on + strand at 300.078 kb on - strand at 300.079 kb on + strand at 300.081 kb on + strand at 300.111 kb on + strand at 300.114 kb on + strand at 300.222 kb on + strand, within HMPREF1058_RS02060 at 300.223 kb on - strand, within HMPREF1058_RS02060 at 300.278 kb on - strand, within HMPREF1058_RS02060 at 300.283 kb on + strand, within HMPREF1058_RS02060 at 300.284 kb on - strand, within HMPREF1058_RS02060 at 300.399 kb on - strand, within HMPREF1058_RS02060 at 300.399 kb on - strand, within HMPREF1058_RS02060 at 300.642 kb on - strand, within HMPREF1058_RS02060 at 300.642 kb on - strand, within HMPREF1058_RS02060 at 300.642 kb on - strand, within HMPREF1058_RS02060 at 300.664 kb on + strand, within HMPREF1058_RS02060 at 300.665 kb on - strand, within HMPREF1058_RS02060 at 300.771 kb on + strand, within HMPREF1058_RS02060 at 300.825 kb on + strand, within HMPREF1058_RS02060 at 300.834 kb on + strand, within HMPREF1058_RS02060 at 300.835 kb on - strand, within HMPREF1058_RS02060 at 300.866 kb on - strand, within HMPREF1058_RS02060 at 300.873 kb on - strand, within HMPREF1058_RS02060
Per-strain Table
Position Strand Gene LocusTag Fraction D-Xylose 10 mM (C) remove 298,675 + HMPREF1058_RS02070 0.72 -2.8 298,676 - HMPREF1058_RS02070 0.72 -4.2 298,676 - HMPREF1058_RS02070 0.72 -2.9 298,680 + HMPREF1058_RS02070 0.72 +1.5 298,759 - HMPREF1058_RS02070 0.75 +0.2 298,812 + HMPREF1058_RS02070 0.76 -3.0 298,825 - HMPREF1058_RS02070 0.77 -3.3 298,839 + HMPREF1058_RS02070 0.77 -2.1 298,840 - HMPREF1058_RS02070 0.77 -1.3 298,840 - HMPREF1058_RS02070 0.77 -2.6 298,851 - HMPREF1058_RS02070 0.77 -1.3 298,881 + HMPREF1058_RS02070 0.78 -1.8 298,906 - HMPREF1058_RS02070 0.79 +1.4 298,961 - HMPREF1058_RS02070 0.81 -3.5 299,017 - HMPREF1058_RS02070 0.83 -1.3 299,017 - HMPREF1058_RS02070 0.83 -3.1 299,018 + HMPREF1058_RS02070 0.83 -2.9 299,019 - HMPREF1058_RS02070 0.83 -2.0 299,019 - HMPREF1058_RS02070 0.83 -1.4 299,025 - HMPREF1058_RS02070 0.83 -1.2 299,076 + HMPREF1058_RS02070 0.85 -1.8 299,122 + HMPREF1058_RS02070 0.86 -1.4 299,137 - HMPREF1058_RS02070 0.86 -1.5 299,166 + HMPREF1058_RS02070 0.87 -2.2 299,215 + HMPREF1058_RS02070 0.89 -2.0 299,216 - HMPREF1058_RS02070 0.89 -0.5 299,220 + HMPREF1058_RS02070 0.89 +1.3 299,220 + HMPREF1058_RS02070 0.89 -1.9 299,220 + HMPREF1058_RS02070 0.89 -2.0 299,221 - HMPREF1058_RS02070 0.89 -0.7 299,221 - HMPREF1058_RS02070 0.89 -3.7 299,225 + HMPREF1058_RS02070 0.89 -2.2 299,412 + -1.2 299,518 + -0.3 299,532 + -0.1 299,571 - -1.6 299,572 + -1.2 299,573 - -0.0 299,619 + -0.4 299,683 - HMPREF1058_RS02065 0.15 -2.0 299,683 - HMPREF1058_RS02065 0.15 -2.2 300,006 + +1.5 300,007 - +1.0 300,016 + -0.3 300,017 - -0.0 300,017 - -0.2 300,059 + +0.0 300,062 - -0.5 300,077 + +0.7 300,077 + -0.8 300,078 - -2.5 300,079 + -0.3 300,081 + -0.7 300,111 + -0.6 300,114 + -0.1 300,222 + HMPREF1058_RS02060 0.11 -0.4 300,223 - HMPREF1058_RS02060 0.11 -0.3 300,278 - HMPREF1058_RS02060 0.15 -0.7 300,283 + HMPREF1058_RS02060 0.16 +0.4 300,284 - HMPREF1058_RS02060 0.16 -2.0 300,399 - HMPREF1058_RS02060 0.24 +0.4 300,399 - HMPREF1058_RS02060 0.24 +0.1 300,642 - HMPREF1058_RS02060 0.42 +0.5 300,642 - HMPREF1058_RS02060 0.42 -1.8 300,642 - HMPREF1058_RS02060 0.42 -2.0 300,664 + HMPREF1058_RS02060 0.44 -1.4 300,665 - HMPREF1058_RS02060 0.44 -0.6 300,771 + HMPREF1058_RS02060 0.51 -0.1 300,825 + HMPREF1058_RS02060 0.55 -2.2 300,834 + HMPREF1058_RS02060 0.56 -0.0 300,835 - HMPREF1058_RS02060 0.56 -0.8 300,866 - HMPREF1058_RS02060 0.58 -2.2 300,873 - HMPREF1058_RS02060 0.59 +0.5
Or see this region's nucleotide sequence