Experiment: D-Xylose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS01870 and HMPREF1058_RS01865 are separated by 3 nucleotides HMPREF1058_RS01865 and HMPREF1058_RS0120065 are separated by 80 nucleotides
HMPREF1058_RS01870: HMPREF1058_RS01870 - tape measure protein, at 19,997 to 24,631
_RS01870
HMPREF1058_RS01865: HMPREF1058_RS01865 - hypothetical protein, at 24,635 to 25,051
_RS01865
HMPREF1058_RS0120065: HMPREF1058_RS0120065 - hypothetical protein, at 25,132 to 27,336
_RS0120065
Position (kb) 24
25
26 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 23.667 kb on + strand, within HMPREF1058_RS01870 at 23.692 kb on + strand, within HMPREF1058_RS01870 at 23.693 kb on - strand, within HMPREF1058_RS01870 at 23.855 kb on - strand, within HMPREF1058_RS01870 at 23.915 kb on + strand, within HMPREF1058_RS01870 at 23.915 kb on + strand, within HMPREF1058_RS01870 at 23.916 kb on - strand, within HMPREF1058_RS01870 at 23.916 kb on - strand, within HMPREF1058_RS01870 at 23.917 kb on + strand, within HMPREF1058_RS01870 at 23.918 kb on - strand, within HMPREF1058_RS01870 at 23.918 kb on - strand, within HMPREF1058_RS01870 at 23.920 kb on - strand, within HMPREF1058_RS01870 at 23.920 kb on - strand, within HMPREF1058_RS01870 at 23.961 kb on - strand, within HMPREF1058_RS01870 at 23.997 kb on - strand, within HMPREF1058_RS01870 at 24.007 kb on + strand, within HMPREF1058_RS01870 at 24.068 kb on + strand, within HMPREF1058_RS01870 at 24.113 kb on - strand, within HMPREF1058_RS01870 at 24.113 kb on - strand, within HMPREF1058_RS01870 at 24.134 kb on + strand, within HMPREF1058_RS01870 at 24.135 kb on - strand, within HMPREF1058_RS01870 at 24.135 kb on - strand, within HMPREF1058_RS01870 at 24.135 kb on - strand, within HMPREF1058_RS01870 at 24.140 kb on - strand, within HMPREF1058_RS01870 at 24.169 kb on + strand at 24.210 kb on - strand at 24.210 kb on - strand at 24.210 kb on - strand at 24.218 kb on + strand at 24.525 kb on - strand at 24.553 kb on + strand at 24.595 kb on + strand at 24.595 kb on + strand at 24.596 kb on - strand at 24.597 kb on + strand at 24.634 kb on + strand at 24.635 kb on - strand at 24.645 kb on + strand at 24.648 kb on + strand at 24.648 kb on + strand at 24.670 kb on + strand at 24.670 kb on + strand at 24.671 kb on - strand at 24.671 kb on - strand at 24.796 kb on + strand, within HMPREF1058_RS01865 at 24.816 kb on + strand, within HMPREF1058_RS01865 at 24.932 kb on - strand, within HMPREF1058_RS01865 at 24.942 kb on - strand, within HMPREF1058_RS01865 at 25.079 kb on - strand at 25.177 kb on - strand at 25.231 kb on + strand at 25.232 kb on - strand at 25.265 kb on + strand at 25.265 kb on + strand at 25.285 kb on + strand at 25.286 kb on - strand at 25.286 kb on - strand at 25.297 kb on - strand at 25.421 kb on - strand, within HMPREF1058_RS0120065 at 25.479 kb on - strand, within HMPREF1058_RS0120065 at 25.488 kb on + strand, within HMPREF1058_RS0120065 at 25.490 kb on + strand, within HMPREF1058_RS0120065 at 25.490 kb on + strand, within HMPREF1058_RS0120065 at 25.491 kb on - strand, within HMPREF1058_RS0120065 at 25.525 kb on + strand, within HMPREF1058_RS0120065 at 25.526 kb on - strand, within HMPREF1058_RS0120065 at 25.592 kb on - strand, within HMPREF1058_RS0120065 at 25.765 kb on + strand, within HMPREF1058_RS0120065 at 25.891 kb on + strand, within HMPREF1058_RS0120065 at 25.891 kb on + strand, within HMPREF1058_RS0120065
Per-strain Table
Position Strand Gene LocusTag Fraction D-Xylose 10 mM (C) remove 23,667 + HMPREF1058_RS01870 0.79 +0.4 23,692 + HMPREF1058_RS01870 0.80 -2.3 23,693 - HMPREF1058_RS01870 0.80 +0.3 23,855 - HMPREF1058_RS01870 0.83 +0.8 23,915 + HMPREF1058_RS01870 0.85 -1.1 23,915 + HMPREF1058_RS01870 0.85 +0.7 23,916 - HMPREF1058_RS01870 0.85 -0.4 23,916 - HMPREF1058_RS01870 0.85 -0.2 23,917 + HMPREF1058_RS01870 0.85 -1.0 23,918 - HMPREF1058_RS01870 0.85 +1.2 23,918 - HMPREF1058_RS01870 0.85 +1.5 23,920 - HMPREF1058_RS01870 0.85 -1.1 23,920 - HMPREF1058_RS01870 0.85 +1.4 23,961 - HMPREF1058_RS01870 0.86 -0.3 23,997 - HMPREF1058_RS01870 0.86 +0.2 24,007 + HMPREF1058_RS01870 0.87 -0.9 24,068 + HMPREF1058_RS01870 0.88 +0.6 24,113 - HMPREF1058_RS01870 0.89 +0.6 24,113 - HMPREF1058_RS01870 0.89 -1.1 24,134 + HMPREF1058_RS01870 0.89 -1.2 24,135 - HMPREF1058_RS01870 0.89 -0.1 24,135 - HMPREF1058_RS01870 0.89 +0.8 24,135 - HMPREF1058_RS01870 0.89 +0.7 24,140 - HMPREF1058_RS01870 0.89 +0.0 24,169 + -0.8 24,210 - +0.2 24,210 - +2.0 24,210 - +1.2 24,218 + +0.0 24,525 - -0.9 24,553 + +0.8 24,595 + -0.4 24,595 + +0.4 24,596 - -1.1 24,597 + -0.5 24,634 + -0.3 24,635 - +0.7 24,645 + +1.0 24,648 + +2.5 24,648 + -0.4 24,670 + +1.0 24,670 + +0.6 24,671 - -0.2 24,671 - -1.9 24,796 + HMPREF1058_RS01865 0.39 -1.8 24,816 + HMPREF1058_RS01865 0.43 -0.4 24,932 - HMPREF1058_RS01865 0.71 -1.3 24,942 - HMPREF1058_RS01865 0.74 -2.3 25,079 - -0.3 25,177 - +0.6 25,231 + -0.3 25,232 - -0.5 25,265 + -0.6 25,265 + -0.2 25,285 + -1.3 25,286 - -0.3 25,286 - -0.0 25,297 - -0.2 25,421 - HMPREF1058_RS0120065 0.13 -0.7 25,479 - HMPREF1058_RS0120065 0.16 -0.8 25,488 + HMPREF1058_RS0120065 0.16 +0.2 25,490 + HMPREF1058_RS0120065 0.16 -0.5 25,490 + HMPREF1058_RS0120065 0.16 -0.0 25,491 - HMPREF1058_RS0120065 0.16 +0.1 25,525 + HMPREF1058_RS0120065 0.18 +2.8 25,526 - HMPREF1058_RS0120065 0.18 -2.1 25,592 - HMPREF1058_RS0120065 0.21 -0.6 25,765 + HMPREF1058_RS0120065 0.29 -0.3 25,891 + HMPREF1058_RS0120065 0.34 +0.3 25,891 + HMPREF1058_RS0120065 0.34 +0.4
Or see this region's nucleotide sequence