Experiment: D-Xylose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS01465 and HMPREF1058_RS01460 are separated by 124 nucleotides HMPREF1058_RS01460 and HMPREF1058_RS01455 are separated by 2 nucleotides HMPREF1058_RS01455 and HMPREF1058_RS01450 are separated by 24 nucleotides
HMPREF1058_RS01465: HMPREF1058_RS01465 - putative transporter, at 117,979 to 119,667
_RS01465
HMPREF1058_RS01460: HMPREF1058_RS01460 - acyl-CoA carboxylase subunit beta, at 119,792 to 121,324
_RS01460
HMPREF1058_RS01455: HMPREF1058_RS01455 - acetyl-CoA carboxylase biotin carboxyl carrier protein subunit, at 121,327 to 121,842
_RS01455
HMPREF1058_RS01450: HMPREF1058_RS01450 - acetyl-CoA carboxylase biotin carboxylase subunit, at 121,867 to 123,378
_RS01450
Position (kb) 119
120
121
122 Strain fitness (log2 ratio) -2
-1
0
1
2 at 118.819 kb on - strand, within HMPREF1058_RS01465 at 118.869 kb on + strand, within HMPREF1058_RS01465 at 118.874 kb on - strand, within HMPREF1058_RS01465 at 118.966 kb on + strand, within HMPREF1058_RS01465 at 118.966 kb on + strand, within HMPREF1058_RS01465 at 118.991 kb on - strand, within HMPREF1058_RS01465 at 119.094 kb on + strand, within HMPREF1058_RS01465 at 119.095 kb on - strand, within HMPREF1058_RS01465 at 119.163 kb on - strand, within HMPREF1058_RS01465 at 119.188 kb on + strand, within HMPREF1058_RS01465 at 119.189 kb on - strand, within HMPREF1058_RS01465 at 119.198 kb on - strand, within HMPREF1058_RS01465 at 119.320 kb on + strand, within HMPREF1058_RS01465 at 119.611 kb on + strand at 119.667 kb on + strand at 119.667 kb on + strand at 119.668 kb on - strand at 119.804 kb on - strand at 119.872 kb on + strand at 119.967 kb on - strand, within HMPREF1058_RS01460 at 120.102 kb on + strand, within HMPREF1058_RS01460 at 120.132 kb on - strand, within HMPREF1058_RS01460 at 120.152 kb on - strand, within HMPREF1058_RS01460
Per-strain Table
Position Strand Gene LocusTag Fraction D-Xylose 10 mM (C) remove 118,819 - HMPREF1058_RS01465 0.50 +0.6 118,869 + HMPREF1058_RS01465 0.53 +1.8 118,874 - HMPREF1058_RS01465 0.53 +0.9 118,966 + HMPREF1058_RS01465 0.58 +0.8 118,966 + HMPREF1058_RS01465 0.58 +0.8 118,991 - HMPREF1058_RS01465 0.60 -0.7 119,094 + HMPREF1058_RS01465 0.66 +0.5 119,095 - HMPREF1058_RS01465 0.66 -0.3 119,163 - HMPREF1058_RS01465 0.70 -0.6 119,188 + HMPREF1058_RS01465 0.72 +0.9 119,189 - HMPREF1058_RS01465 0.72 -0.5 119,198 - HMPREF1058_RS01465 0.72 +0.7 119,320 + HMPREF1058_RS01465 0.79 +0.1 119,611 + -0.2 119,667 + +0.4 119,667 + -0.5 119,668 - -1.9 119,804 - -1.0 119,872 + +0.8 119,967 - HMPREF1058_RS01460 0.11 -1.4 120,102 + HMPREF1058_RS01460 0.20 -1.4 120,132 - HMPREF1058_RS01460 0.22 -1.5 120,152 - HMPREF1058_RS01460 0.23 -1.3
Or see this region's nucleotide sequence