Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS18555

Experiment: D-Mannose 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS18565 and HMPREF1058_RS18560 are separated by 20 nucleotidesHMPREF1058_RS18560 and HMPREF1058_RS18555 are separated by 78 nucleotidesHMPREF1058_RS18555 and HMPREF1058_RS18550 overlap by 35 nucleotidesHMPREF1058_RS18550 and HMPREF1058_RS18545 are separated by 100 nucleotides HMPREF1058_RS18565: HMPREF1058_RS18565 - hypothetical protein, at 126,196 to 126,666 _RS18565 HMPREF1058_RS18560: HMPREF1058_RS18560 - recombination protein RecR, at 126,687 to 127,304 _RS18560 HMPREF1058_RS18555: HMPREF1058_RS18555 - sodium:solute symporter, at 127,383 to 128,864 _RS18555 HMPREF1058_RS18550: HMPREF1058_RS18550 - YihA family ribosome biogenesis GTP-binding protein, at 128,830 to 129,432 _RS18550 HMPREF1058_RS18545: HMPREF1058_RS18545 - DEAD/DEAH box helicase family protein, at 129,533 to 131,845 _RS18545 Position (kb) 127 128 129Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 126.525 kb on - strand, within HMPREF1058_RS18565at 126.525 kb on - strand, within HMPREF1058_RS18565at 126.620 kb on + strandat 126.620 kb on + strandat 126.621 kb on - strandat 126.833 kb on - strand, within HMPREF1058_RS18560at 126.925 kb on - strand, within HMPREF1058_RS18560at 126.945 kb on + strand, within HMPREF1058_RS18560at 126.985 kb on + strand, within HMPREF1058_RS18560at 127.035 kb on - strand, within HMPREF1058_RS18560at 127.085 kb on + strand, within HMPREF1058_RS18560at 127.086 kb on - strand, within HMPREF1058_RS18560at 127.107 kb on + strand, within HMPREF1058_RS18560at 127.109 kb on + strand, within HMPREF1058_RS18560at 127.110 kb on - strand, within HMPREF1058_RS18560at 127.125 kb on - strandat 127.163 kb on + strand, within HMPREF1058_RS18560at 127.319 kb on + strandat 127.322 kb on - strandat 127.359 kb on + strandat 127.359 kb on + strandat 127.397 kb on + strandat 127.411 kb on + strandat 127.412 kb on - strandat 127.419 kb on + strandat 127.419 kb on + strandat 127.430 kb on - strandat 127.509 kb on + strandat 127.553 kb on + strand, within HMPREF1058_RS18555at 127.579 kb on + strand, within HMPREF1058_RS18555at 127.600 kb on - strand, within HMPREF1058_RS18555at 127.600 kb on - strand, within HMPREF1058_RS18555at 127.692 kb on + strand, within HMPREF1058_RS18555at 127.728 kb on + strand, within HMPREF1058_RS18555at 127.815 kb on + strand, within HMPREF1058_RS18555at 127.819 kb on + strand, within HMPREF1058_RS18555at 127.963 kb on + strand, within HMPREF1058_RS18555at 127.966 kb on + strand, within HMPREF1058_RS18555at 127.966 kb on + strand, within HMPREF1058_RS18555at 127.971 kb on + strand, within HMPREF1058_RS18555at 127.972 kb on - strand, within HMPREF1058_RS18555at 128.199 kb on + strandat 128.200 kb on - strand, within HMPREF1058_RS18555at 128.200 kb on - strand, within HMPREF1058_RS18555at 128.200 kb on - strand, within HMPREF1058_RS18555at 128.442 kb on - strand, within HMPREF1058_RS18555at 128.442 kb on - strand, within HMPREF1058_RS18555at 128.443 kb on + strand, within HMPREF1058_RS18555at 128.443 kb on + strand, within HMPREF1058_RS18555at 128.586 kb on + strand, within HMPREF1058_RS18555at 128.586 kb on + strand, within HMPREF1058_RS18555at 128.586 kb on + strand, within HMPREF1058_RS18555at 128.587 kb on - strand, within HMPREF1058_RS18555at 128.587 kb on - strand, within HMPREF1058_RS18555at 128.607 kb on + strand, within HMPREF1058_RS18555at 128.679 kb on + strand, within HMPREF1058_RS18555at 128.683 kb on + strand, within HMPREF1058_RS18555at 128.684 kb on - strand, within HMPREF1058_RS18555at 128.702 kb on - strand, within HMPREF1058_RS18555at 128.704 kb on + strand, within HMPREF1058_RS18555at 128.809 kb on + strandat 129.430 kb on + strandat 129.431 kb on - strandat 129.431 kb on - strandat 129.451 kb on + strandat 129.455 kb on + strandat 129.490 kb on - strandat 129.596 kb on + strandat 129.596 kb on + strandat 129.596 kb on + strandat 129.597 kb on - strandat 129.597 kb on - strandat 129.691 kb on - strandat 129.737 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Mannose 10 mM (C)
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126,525 - HMPREF1058_RS18565 0.70 -0.3
126,525 - HMPREF1058_RS18565 0.70 -2.8
126,620 + +3.3
126,620 + +3.3
126,621 - -0.6
126,833 - HMPREF1058_RS18560 0.24 -0.3
126,925 - HMPREF1058_RS18560 0.39 +0.2
126,945 + HMPREF1058_RS18560 0.42 +0.7
126,985 + HMPREF1058_RS18560 0.48 +2.6
127,035 - HMPREF1058_RS18560 0.56 -0.1
127,085 + HMPREF1058_RS18560 0.64 +2.1
127,086 - HMPREF1058_RS18560 0.65 +0.6
127,107 + HMPREF1058_RS18560 0.68 +2.7
127,109 + HMPREF1058_RS18560 0.68 +2.6
127,110 - HMPREF1058_RS18560 0.68 -0.6
127,125 - -0.8
127,163 + HMPREF1058_RS18560 0.77 +3.6
127,319 + +2.5
127,322 - -1.0
127,359 + +0.9
127,359 + +0.4
127,397 + -0.8
127,411 + -3.1
127,412 - -1.1
127,419 + -0.3
127,419 + +2.5
127,430 - +1.0
127,509 + -2.9
127,553 + HMPREF1058_RS18555 0.11 -1.8
127,579 + HMPREF1058_RS18555 0.13 +0.3
127,600 - HMPREF1058_RS18555 0.15 -2.6
127,600 - HMPREF1058_RS18555 0.15 -1.5
127,692 + HMPREF1058_RS18555 0.21 +0.1
127,728 + HMPREF1058_RS18555 0.23 -2.2
127,815 + HMPREF1058_RS18555 0.29 -2.0
127,819 + HMPREF1058_RS18555 0.29 -1.4
127,963 + HMPREF1058_RS18555 0.39 -1.8
127,966 + HMPREF1058_RS18555 0.39 -1.6
127,966 + HMPREF1058_RS18555 0.39 -3.7
127,971 + HMPREF1058_RS18555 0.40 -1.5
127,972 - HMPREF1058_RS18555 0.40 -2.2
128,199 + -1.1
128,200 - HMPREF1058_RS18555 0.55 -2.3
128,200 - HMPREF1058_RS18555 0.55 -0.5
128,200 - HMPREF1058_RS18555 0.55 -0.0
128,442 - HMPREF1058_RS18555 0.71 +0.0
128,442 - HMPREF1058_RS18555 0.71 -0.3
128,443 + HMPREF1058_RS18555 0.72 -1.6
128,443 + HMPREF1058_RS18555 0.72 -0.2
128,586 + HMPREF1058_RS18555 0.81 -1.4
128,586 + HMPREF1058_RS18555 0.81 -1.5
128,586 + HMPREF1058_RS18555 0.81 -0.6
128,587 - HMPREF1058_RS18555 0.81 -0.3
128,587 - HMPREF1058_RS18555 0.81 -0.3
128,607 + HMPREF1058_RS18555 0.83 +0.5
128,679 + HMPREF1058_RS18555 0.87 -1.7
128,683 + HMPREF1058_RS18555 0.88 -2.6
128,684 - HMPREF1058_RS18555 0.88 -1.5
128,702 - HMPREF1058_RS18555 0.89 +0.8
128,704 + HMPREF1058_RS18555 0.89 -2.6
128,809 + -1.0
129,430 + +0.2
129,431 - +1.3
129,431 - +0.7
129,451 + -1.3
129,455 + +0.8
129,490 - -1.1
129,596 + -1.0
129,596 + -1.3
129,596 + +0.2
129,597 - +0.4
129,597 - +0.5
129,691 - +0.7
129,737 - +0.6

Or see this region's nucleotide sequence