Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS17985

Experiment: D-Mannose 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS17990 and HMPREF1058_RS17985 are separated by 162 nucleotidesHMPREF1058_RS17985 and HMPREF1058_RS17980 are separated by 724 nucleotides HMPREF1058_RS17990: HMPREF1058_RS17990 - dihydrodipicolinate synthase family protein, at 284,387 to 285,319 _RS17990 HMPREF1058_RS17985: HMPREF1058_RS17985 - ATP-binding cassette domain-containing protein, at 285,482 to 286,930 _RS17985 HMPREF1058_RS17980: HMPREF1058_RS17980 - hypothetical protein, at 287,655 to 288,380 _RS17980 Position (kb) 285 286 287Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1 2 3at 284.562 kb on + strand, within HMPREF1058_RS17990at 284.566 kb on + strandat 284.566 kb on + strand, within HMPREF1058_RS17990at 284.566 kb on + strand, within HMPREF1058_RS17990at 284.567 kb on - strand, within HMPREF1058_RS17990at 284.649 kb on - strand, within HMPREF1058_RS17990at 284.649 kb on - strand, within HMPREF1058_RS17990at 284.652 kb on + strand, within HMPREF1058_RS17990at 284.652 kb on + strand, within HMPREF1058_RS17990at 284.858 kb on - strand, within HMPREF1058_RS17990at 284.896 kb on + strand, within HMPREF1058_RS17990at 284.897 kb on - strand, within HMPREF1058_RS17990at 284.901 kb on + strand, within HMPREF1058_RS17990at 284.902 kb on - strand, within HMPREF1058_RS17990at 284.912 kb on - strand, within HMPREF1058_RS17990at 284.983 kb on - strand, within HMPREF1058_RS17990at 285.071 kb on - strand, within HMPREF1058_RS17990at 285.104 kb on - strand, within HMPREF1058_RS17990at 285.182 kb on + strand, within HMPREF1058_RS17990at 285.183 kb on - strand, within HMPREF1058_RS17990at 285.283 kb on + strandat 285.296 kb on - strandat 285.296 kb on - strandat 285.350 kb on - strandat 285.355 kb on + strandat 285.463 kb on - strandat 285.463 kb on - strandat 285.508 kb on + strandat 285.513 kb on - strandat 285.550 kb on + strandat 285.808 kb on - strand, within HMPREF1058_RS17985at 285.897 kb on + strand, within HMPREF1058_RS17985at 285.897 kb on + strand, within HMPREF1058_RS17985at 285.897 kb on + strand, within HMPREF1058_RS17985at 285.898 kb on - strand, within HMPREF1058_RS17985at 285.902 kb on + strand, within HMPREF1058_RS17985at 285.902 kb on + strand, within HMPREF1058_RS17985at 285.902 kb on + strand, within HMPREF1058_RS17985at 285.903 kb on - strand, within HMPREF1058_RS17985at 285.904 kb on + strand, within HMPREF1058_RS17985at 285.914 kb on + strand, within HMPREF1058_RS17985at 285.926 kb on - strand, within HMPREF1058_RS17985at 285.965 kb on - strand, within HMPREF1058_RS17985at 286.118 kb on + strand, within HMPREF1058_RS17985at 286.119 kb on - strand, within HMPREF1058_RS17985at 286.119 kb on - strand, within HMPREF1058_RS17985at 286.209 kb on - strand, within HMPREF1058_RS17985at 286.243 kb on - strand, within HMPREF1058_RS17985at 286.256 kb on + strand, within HMPREF1058_RS17985at 286.265 kb on - strand, within HMPREF1058_RS17985at 286.292 kb on - strand, within HMPREF1058_RS17985at 286.316 kb on - strand, within HMPREF1058_RS17985at 286.337 kb on - strand, within HMPREF1058_RS17985at 286.358 kb on + strand, within HMPREF1058_RS17985at 286.442 kb on + strand, within HMPREF1058_RS17985at 286.487 kb on + strand, within HMPREF1058_RS17985at 286.487 kb on + strand, within HMPREF1058_RS17985at 286.551 kb on + strand, within HMPREF1058_RS17985at 286.651 kb on - strand, within HMPREF1058_RS17985at 286.654 kb on - strand, within HMPREF1058_RS17985at 286.695 kb on + strand, within HMPREF1058_RS17985at 286.702 kb on + strand, within HMPREF1058_RS17985at 286.791 kb on - strandat 286.832 kb on + strandat 286.832 kb on + strandat 286.834 kb on + strandat 286.835 kb on - strandat 286.835 kb on - strandat 286.859 kb on - strandat 286.994 kb on - strandat 287.027 kb on + strandat 287.028 kb on - strandat 287.032 kb on - strandat 287.050 kb on - strandat 287.076 kb on + strandat 287.088 kb on - strandat 287.243 kb on + strandat 287.243 kb on + strandat 287.244 kb on - strandat 287.247 kb on + strandat 287.249 kb on + strandat 287.249 kb on + strandat 287.249 kb on - strandat 287.272 kb on + strandat 287.272 kb on + strandat 287.315 kb on + strandat 287.315 kb on + strandat 287.450 kb on - strandat 287.473 kb on - strandat 287.475 kb on - strandat 287.475 kb on - strandat 287.561 kb on + strandat 287.571 kb on + strandat 287.572 kb on - strandat 287.588 kb on + strandat 287.603 kb on + strandat 287.607 kb on + strandat 287.608 kb on - strandat 287.616 kb on + strandat 287.616 kb on + strandat 287.617 kb on - strandat 287.628 kb on + strandat 287.628 kb on + strandat 287.629 kb on - strandat 287.764 kb on + strand, within HMPREF1058_RS17980at 287.772 kb on + strand, within HMPREF1058_RS17980at 287.886 kb on - strand, within HMPREF1058_RS17980at 287.908 kb on + strand, within HMPREF1058_RS17980at 287.909 kb on - strand, within HMPREF1058_RS17980

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Mannose 10 mM (C)
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284,562 + HMPREF1058_RS17990 0.19 -1.4
284,566 + -0.1
284,566 + HMPREF1058_RS17990 0.19 +0.6
284,566 + HMPREF1058_RS17990 0.19 +0.4
284,567 - HMPREF1058_RS17990 0.19 +1.5
284,649 - HMPREF1058_RS17990 0.28 +0.1
284,649 - HMPREF1058_RS17990 0.28 -1.5
284,652 + HMPREF1058_RS17990 0.28 +0.3
284,652 + HMPREF1058_RS17990 0.28 +1.1
284,858 - HMPREF1058_RS17990 0.50 -1.1
284,896 + HMPREF1058_RS17990 0.55 +0.4
284,897 - HMPREF1058_RS17990 0.55 -3.3
284,901 + HMPREF1058_RS17990 0.55 -1.4
284,902 - HMPREF1058_RS17990 0.55 +0.4
284,912 - HMPREF1058_RS17990 0.56 -0.6
284,983 - HMPREF1058_RS17990 0.64 -0.5
285,071 - HMPREF1058_RS17990 0.73 -0.5
285,104 - HMPREF1058_RS17990 0.77 +3.3
285,182 + HMPREF1058_RS17990 0.85 +1.2
285,183 - HMPREF1058_RS17990 0.85 -0.4
285,283 + -0.9
285,296 - -0.0
285,296 - -0.3
285,350 - -0.8
285,355 + -0.2
285,463 - -0.1
285,463 - -2.0
285,508 + -4.4
285,513 - -1.8
285,550 + +0.5
285,808 - HMPREF1058_RS17985 0.22 -4.2
285,897 + HMPREF1058_RS17985 0.29 -3.2
285,897 + HMPREF1058_RS17985 0.29 -2.3
285,897 + HMPREF1058_RS17985 0.29 -3.8
285,898 - HMPREF1058_RS17985 0.29 -5.1
285,902 + HMPREF1058_RS17985 0.29 -3.8
285,902 + HMPREF1058_RS17985 0.29 -2.5
285,902 + HMPREF1058_RS17985 0.29 -2.7
285,903 - HMPREF1058_RS17985 0.29 -5.9
285,904 + HMPREF1058_RS17985 0.29 -2.3
285,914 + HMPREF1058_RS17985 0.30 -3.2
285,926 - HMPREF1058_RS17985 0.31 -3.7
285,965 - HMPREF1058_RS17985 0.33 -2.3
286,118 + HMPREF1058_RS17985 0.44 -3.2
286,119 - HMPREF1058_RS17985 0.44 -1.1
286,119 - HMPREF1058_RS17985 0.44 -5.9
286,209 - HMPREF1058_RS17985 0.50 -1.7
286,243 - HMPREF1058_RS17985 0.53 -3.2
286,256 + HMPREF1058_RS17985 0.53 -2.6
286,265 - HMPREF1058_RS17985 0.54 -5.7
286,292 - HMPREF1058_RS17985 0.56 -3.9
286,316 - HMPREF1058_RS17985 0.58 -2.6
286,337 - HMPREF1058_RS17985 0.59 -0.5
286,358 + HMPREF1058_RS17985 0.60 -5.9
286,442 + HMPREF1058_RS17985 0.66 -0.5
286,487 + HMPREF1058_RS17985 0.69 -0.1
286,487 + HMPREF1058_RS17985 0.69 -1.5
286,551 + HMPREF1058_RS17985 0.74 -2.7
286,651 - HMPREF1058_RS17985 0.81 -5.2
286,654 - HMPREF1058_RS17985 0.81 -1.5
286,695 + HMPREF1058_RS17985 0.84 -3.5
286,702 + HMPREF1058_RS17985 0.84 -3.0
286,791 - -2.7
286,832 + -3.9
286,832 + -3.7
286,834 + -2.0
286,835 - -3.6
286,835 - -1.8
286,859 - -3.9
286,994 - +0.4
287,027 + -0.4
287,028 - -1.1
287,032 - -1.5
287,050 - -0.5
287,076 + -0.6
287,088 - -0.2
287,243 + -0.4
287,243 + +0.7
287,244 - -0.4
287,247 + -0.0
287,249 + +1.8
287,249 + +0.4
287,249 - +1.6
287,272 + -0.2
287,272 + +2.5
287,315 + +0.2
287,315 + -0.7
287,450 - +1.5
287,473 - +3.3
287,475 - +0.3
287,475 - +0.5
287,561 + +0.7
287,571 + +0.4
287,572 - +0.3
287,588 + +2.8
287,603 + -0.4
287,607 + -1.2
287,608 - -1.7
287,616 + +1.5
287,616 + -1.0
287,617 - +1.6
287,628 + +0.3
287,628 + +0.4
287,629 - +0.1
287,764 + HMPREF1058_RS17980 0.15 -0.3
287,772 + HMPREF1058_RS17980 0.16 -1.2
287,886 - HMPREF1058_RS17980 0.32 +0.9
287,908 + HMPREF1058_RS17980 0.35 +0.9
287,909 - HMPREF1058_RS17980 0.35 +0.9

Or see this region's nucleotide sequence