Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS17975

Experiment: D-Mannose 10 mM (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHMPREF1058_RS17980 and HMPREF1058_RS20410 are separated by 62 nucleotidesHMPREF1058_RS20410 and HMPREF1058_RS17975 are separated by 148 nucleotidesHMPREF1058_RS17975 and HMPREF1058_RS17970 are separated by 14 nucleotidesHMPREF1058_RS17970 and HMPREF1058_RS17965 are separated by 11 nucleotides HMPREF1058_RS17980: HMPREF1058_RS17980 - hypothetical protein, at 287,655 to 288,380 _RS17980 HMPREF1058_RS20410: HMPREF1058_RS20410 - hypothetical protein, at 288,443 to 288,675 _RS20410 HMPREF1058_RS17975: HMPREF1058_RS17975 - ATP-dependent dethiobiotin synthetase BioD, at 288,824 to 289,468 _RS17975 HMPREF1058_RS17970: HMPREF1058_RS17970 - malonyl-ACP O-methyltransferase BioC, at 289,483 to 290,238 _RS17970 HMPREF1058_RS17965: HMPREF1058_RS17965 - DUF452 family protein, at 290,250 to 290,903 _RS17965 Position (kb) 288 289 290Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 287.886 kb on - strand, within HMPREF1058_RS17980at 287.908 kb on + strand, within HMPREF1058_RS17980at 287.909 kb on - strand, within HMPREF1058_RS17980at 287.997 kb on - strand, within HMPREF1058_RS17980at 288.022 kb on + strand, within HMPREF1058_RS17980at 288.023 kb on - strand, within HMPREF1058_RS17980at 288.023 kb on - strand, within HMPREF1058_RS17980at 288.133 kb on + strand, within HMPREF1058_RS17980at 288.133 kb on + strand, within HMPREF1058_RS17980at 288.202 kb on - strand, within HMPREF1058_RS17980at 288.224 kb on - strand, within HMPREF1058_RS17980at 288.354 kb on + strandat 288.384 kb on + strandat 288.451 kb on - strandat 288.455 kb on - strandat 288.467 kb on + strand, within HMPREF1058_RS20410at 288.490 kb on + strand, within HMPREF1058_RS20410at 288.490 kb on + strand, within HMPREF1058_RS20410at 288.491 kb on - strand, within HMPREF1058_RS20410at 288.493 kb on + strand, within HMPREF1058_RS20410at 288.520 kb on - strand, within HMPREF1058_RS20410at 288.624 kb on + strand, within HMPREF1058_RS20410at 288.625 kb on - strand, within HMPREF1058_RS20410at 288.652 kb on + strandat 288.652 kb on + strandat 288.652 kb on + strandat 288.673 kb on + strandat 288.719 kb on + strandat 288.719 kb on + strandat 288.721 kb on + strandat 288.722 kb on - strandat 288.726 kb on + strandat 288.727 kb on - strandat 288.744 kb on + strandat 288.745 kb on - strandat 288.773 kb on + strandat 288.836 kb on + strandat 288.875 kb on - strandat 288.887 kb on - strandat 288.899 kb on - strand, within HMPREF1058_RS17975at 288.899 kb on - strand, within HMPREF1058_RS17975at 288.942 kb on + strand, within HMPREF1058_RS17975at 288.942 kb on + strand, within HMPREF1058_RS17975at 288.951 kb on + strand, within HMPREF1058_RS17975at 288.952 kb on + strand, within HMPREF1058_RS17975at 288.977 kb on + strand, within HMPREF1058_RS17975at 288.978 kb on - strand, within HMPREF1058_RS17975at 289.000 kb on + strand, within HMPREF1058_RS17975at 289.009 kb on + strand, within HMPREF1058_RS17975at 289.009 kb on + strand, within HMPREF1058_RS17975at 289.065 kb on + strand, within HMPREF1058_RS17975at 289.070 kb on + strand, within HMPREF1058_RS17975at 289.071 kb on - strand, within HMPREF1058_RS17975at 289.081 kb on + strand, within HMPREF1058_RS17975at 289.122 kb on - strand, within HMPREF1058_RS17975at 289.138 kb on - strand, within HMPREF1058_RS17975at 289.278 kb on + strand, within HMPREF1058_RS17975at 289.279 kb on - strand, within HMPREF1058_RS17975at 289.363 kb on + strand, within HMPREF1058_RS17975at 289.367 kb on - strand, within HMPREF1058_RS17975at 289.454 kb on + strandat 289.507 kb on - strandat 289.508 kb on + strandat 289.509 kb on - strandat 289.512 kb on + strandat 289.512 kb on + strandat 289.709 kb on + strand, within HMPREF1058_RS17970at 289.710 kb on - strand, within HMPREF1058_RS17970at 289.846 kb on - strand, within HMPREF1058_RS17970at 289.848 kb on + strand, within HMPREF1058_RS17970at 289.849 kb on - strand, within HMPREF1058_RS17970at 289.904 kb on - strand, within HMPREF1058_RS17970at 290.017 kb on - strand, within HMPREF1058_RS17970at 290.123 kb on + strand, within HMPREF1058_RS17970at 290.124 kb on - strand, within HMPREF1058_RS17970at 290.132 kb on - strand, within HMPREF1058_RS17970at 290.155 kb on + strand, within HMPREF1058_RS17970at 290.230 kb on - strandat 290.251 kb on + strandat 290.306 kb on + strandat 290.307 kb on - strandat 290.383 kb on - strand, within HMPREF1058_RS17965

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Mannose 10 mM (C)
remove
287,886 - HMPREF1058_RS17980 0.32 +0.9
287,908 + HMPREF1058_RS17980 0.35 +0.9
287,909 - HMPREF1058_RS17980 0.35 +0.9
287,997 - HMPREF1058_RS17980 0.47 -0.8
288,022 + HMPREF1058_RS17980 0.51 -1.1
288,023 - HMPREF1058_RS17980 0.51 +0.1
288,023 - HMPREF1058_RS17980 0.51 +0.7
288,133 + HMPREF1058_RS17980 0.66 +0.8
288,133 + HMPREF1058_RS17980 0.66 -0.1
288,202 - HMPREF1058_RS17980 0.75 +0.6
288,224 - HMPREF1058_RS17980 0.78 -0.0
288,354 + -0.0
288,384 + +0.5
288,451 - -1.8
288,455 - +0.8
288,467 + HMPREF1058_RS20410 0.10 +0.6
288,490 + HMPREF1058_RS20410 0.20 +0.7
288,490 + HMPREF1058_RS20410 0.20 -0.4
288,491 - HMPREF1058_RS20410 0.21 +0.0
288,493 + HMPREF1058_RS20410 0.21 +0.7
288,520 - HMPREF1058_RS20410 0.33 +1.0
288,624 + HMPREF1058_RS20410 0.78 -1.2
288,625 - HMPREF1058_RS20410 0.78 +0.8
288,652 + -1.9
288,652 + +0.6
288,652 + +0.5
288,673 + -1.2
288,719 + +0.2
288,719 + +0.3
288,721 + -1.6
288,722 - -0.6
288,726 + -1.3
288,727 - +1.1
288,744 + -0.4
288,745 - +0.1
288,773 + -0.6
288,836 + -2.0
288,875 - -3.7
288,887 - -2.2
288,899 - HMPREF1058_RS17975 0.12 +0.3
288,899 - HMPREF1058_RS17975 0.12 -0.9
288,942 + HMPREF1058_RS17975 0.18 -2.9
288,942 + HMPREF1058_RS17975 0.18 -1.4
288,951 + HMPREF1058_RS17975 0.20 -3.1
288,952 + HMPREF1058_RS17975 0.20 -2.2
288,977 + HMPREF1058_RS17975 0.24 -1.5
288,978 - HMPREF1058_RS17975 0.24 -1.0
289,000 + HMPREF1058_RS17975 0.27 -0.2
289,009 + HMPREF1058_RS17975 0.29 -3.8
289,009 + HMPREF1058_RS17975 0.29 -3.2
289,065 + HMPREF1058_RS17975 0.37 -2.6
289,070 + HMPREF1058_RS17975 0.38 -2.9
289,071 - HMPREF1058_RS17975 0.38 -1.6
289,081 + HMPREF1058_RS17975 0.40 -3.2
289,122 - HMPREF1058_RS17975 0.46 -1.4
289,138 - HMPREF1058_RS17975 0.49 +0.7
289,278 + HMPREF1058_RS17975 0.70 -3.3
289,279 - HMPREF1058_RS17975 0.71 -3.3
289,363 + HMPREF1058_RS17975 0.84 +0.7
289,367 - HMPREF1058_RS17975 0.84 -2.7
289,454 + -1.4
289,507 - -1.9
289,508 + -1.2
289,509 - -2.9
289,512 + -2.1
289,512 + -3.4
289,709 + HMPREF1058_RS17970 0.30 -0.9
289,710 - HMPREF1058_RS17970 0.30 -1.5
289,846 - HMPREF1058_RS17970 0.48 -1.4
289,848 + HMPREF1058_RS17970 0.48 -2.1
289,849 - HMPREF1058_RS17970 0.48 -2.3
289,904 - HMPREF1058_RS17970 0.56 -1.6
290,017 - HMPREF1058_RS17970 0.71 -0.8
290,123 + HMPREF1058_RS17970 0.85 -2.8
290,124 - HMPREF1058_RS17970 0.85 -0.7
290,132 - HMPREF1058_RS17970 0.86 -1.8
290,155 + HMPREF1058_RS17970 0.89 +0.4
290,230 - -0.8
290,251 + -3.0
290,306 + -1.3
290,307 - -0.8
290,383 - HMPREF1058_RS17965 0.20 -0.5

Or see this region's nucleotide sequence