Experiment: D-Mannose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS16830 and HMPREF1058_RS16825 overlap by 1 nucleotides HMPREF1058_RS16825 and HMPREF1058_RS16820 are separated by 10 nucleotides HMPREF1058_RS16820 and HMPREF1058_RS16815 are separated by 99 nucleotides
HMPREF1058_RS16830: HMPREF1058_RS16830 - acyl-ACP thioesterase, at 585,186 to 585,929
_RS16830
HMPREF1058_RS16825: HMPREF1058_RS16825 - acetolactate synthase small subunit, at 585,929 to 586,483
_RS16825
HMPREF1058_RS16820: HMPREF1058_RS16820 - biosynthetic-type acetolactate synthase large subunit, at 586,494 to 588,191
_RS16820
HMPREF1058_RS16815: HMPREF1058_RS16815 - dihydroxy-acid dehydratase, at 588,291 to 590,093
_RS16815
Position (kb) 586
587
588
589 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2
3 at 585.496 kb on - strand, within HMPREF1058_RS16830 at 585.497 kb on + strand, within HMPREF1058_RS16830 at 585.516 kb on + strand, within HMPREF1058_RS16830 at 585.520 kb on + strand, within HMPREF1058_RS16830 at 585.521 kb on - strand, within HMPREF1058_RS16830 at 585.521 kb on - strand, within HMPREF1058_RS16830 at 585.521 kb on - strand, within HMPREF1058_RS16830 at 585.531 kb on - strand, within HMPREF1058_RS16830 at 585.533 kb on + strand, within HMPREF1058_RS16830 at 585.657 kb on - strand, within HMPREF1058_RS16830 at 585.707 kb on - strand, within HMPREF1058_RS16830 at 585.719 kb on + strand, within HMPREF1058_RS16830 at 585.720 kb on - strand, within HMPREF1058_RS16830 at 585.732 kb on + strand, within HMPREF1058_RS16830 at 585.758 kb on + strand, within HMPREF1058_RS16830 at 585.759 kb on - strand, within HMPREF1058_RS16830 at 585.780 kb on - strand, within HMPREF1058_RS16830 at 585.901 kb on + strand at 586.003 kb on + strand, within HMPREF1058_RS16825 at 586.004 kb on - strand, within HMPREF1058_RS16825 at 586.079 kb on - strand, within HMPREF1058_RS16825 at 586.133 kb on + strand, within HMPREF1058_RS16825 at 586.148 kb on - strand, within HMPREF1058_RS16825 at 586.210 kb on - strand, within HMPREF1058_RS16825 at 586.230 kb on + strand, within HMPREF1058_RS16825 at 586.252 kb on - strand, within HMPREF1058_RS16825 at 586.252 kb on - strand, within HMPREF1058_RS16825 at 586.331 kb on - strand, within HMPREF1058_RS16825 at 586.333 kb on + strand, within HMPREF1058_RS16825 at 586.334 kb on - strand, within HMPREF1058_RS16825 at 586.334 kb on - strand, within HMPREF1058_RS16825 at 586.334 kb on - strand, within HMPREF1058_RS16825 at 586.337 kb on - strand, within HMPREF1058_RS16825 at 586.339 kb on - strand, within HMPREF1058_RS16825 at 586.442 kb on - strand at 586.466 kb on - strand at 586.466 kb on - strand at 586.467 kb on + strand at 586.469 kb on + strand at 586.469 kb on + strand at 586.470 kb on - strand at 586.483 kb on + strand at 586.491 kb on - strand at 586.495 kb on + strand at 586.687 kb on + strand, within HMPREF1058_RS16820 at 586.736 kb on + strand, within HMPREF1058_RS16820 at 586.864 kb on - strand, within HMPREF1058_RS16820 at 586.869 kb on + strand, within HMPREF1058_RS16820 at 586.895 kb on + strand, within HMPREF1058_RS16820 at 586.905 kb on - strand, within HMPREF1058_RS16820 at 586.951 kb on - strand, within HMPREF1058_RS16820 at 586.967 kb on + strand, within HMPREF1058_RS16820 at 586.967 kb on + strand, within HMPREF1058_RS16820 at 586.968 kb on - strand, within HMPREF1058_RS16820 at 587.125 kb on + strand, within HMPREF1058_RS16820 at 587.153 kb on + strand, within HMPREF1058_RS16820 at 587.174 kb on + strand, within HMPREF1058_RS16820 at 587.175 kb on - strand, within HMPREF1058_RS16820 at 587.202 kb on - strand, within HMPREF1058_RS16820 at 587.206 kb on - strand, within HMPREF1058_RS16820 at 587.211 kb on - strand, within HMPREF1058_RS16820 at 587.226 kb on + strand, within HMPREF1058_RS16820 at 587.308 kb on + strand, within HMPREF1058_RS16820 at 587.308 kb on + strand, within HMPREF1058_RS16820 at 587.308 kb on + strand, within HMPREF1058_RS16820 at 587.308 kb on + strand, within HMPREF1058_RS16820 at 587.308 kb on + strand, within HMPREF1058_RS16820 at 587.309 kb on + strand, within HMPREF1058_RS16820 at 587.309 kb on - strand, within HMPREF1058_RS16820 at 587.309 kb on - strand, within HMPREF1058_RS16820 at 587.309 kb on - strand, within HMPREF1058_RS16820 at 587.348 kb on + strand, within HMPREF1058_RS16820 at 587.411 kb on + strand, within HMPREF1058_RS16820 at 587.412 kb on - strand, within HMPREF1058_RS16820 at 587.431 kb on - strand, within HMPREF1058_RS16820 at 587.500 kb on - strand, within HMPREF1058_RS16820 at 587.512 kb on - strand, within HMPREF1058_RS16820 at 587.640 kb on - strand, within HMPREF1058_RS16820 at 587.743 kb on + strand, within HMPREF1058_RS16820 at 587.743 kb on + strand, within HMPREF1058_RS16820 at 587.743 kb on - strand, within HMPREF1058_RS16820 at 587.811 kb on - strand, within HMPREF1058_RS16820 at 587.835 kb on + strand, within HMPREF1058_RS16820 at 587.916 kb on - strand, within HMPREF1058_RS16820 at 587.940 kb on - strand, within HMPREF1058_RS16820 at 588.045 kb on + strand at 588.045 kb on + strand at 588.046 kb on - strand at 588.046 kb on - strand at 588.046 kb on - strand at 588.047 kb on + strand at 588.048 kb on - strand at 588.059 kb on + strand at 588.074 kb on - strand at 588.075 kb on + strand at 588.099 kb on - strand at 588.129 kb on + strand at 588.267 kb on + strand at 588.336 kb on - strand at 588.339 kb on - strand at 588.359 kb on + strand at 588.463 kb on - strand at 588.464 kb on + strand at 588.519 kb on - strand, within HMPREF1058_RS16815 at 588.519 kb on - strand, within HMPREF1058_RS16815 at 588.608 kb on - strand, within HMPREF1058_RS16815 at 588.614 kb on + strand, within HMPREF1058_RS16815 at 588.614 kb on + strand, within HMPREF1058_RS16815 at 588.614 kb on + strand, within HMPREF1058_RS16815 at 588.691 kb on - strand, within HMPREF1058_RS16815 at 588.703 kb on - strand at 588.708 kb on - strand, within HMPREF1058_RS16815 at 588.851 kb on + strand, within HMPREF1058_RS16815 at 588.852 kb on - strand, within HMPREF1058_RS16815 at 588.853 kb on + strand, within HMPREF1058_RS16815 at 588.910 kb on + strand, within HMPREF1058_RS16815 at 588.936 kb on + strand, within HMPREF1058_RS16815 at 588.939 kb on - strand, within HMPREF1058_RS16815 at 588.967 kb on + strand, within HMPREF1058_RS16815 at 588.967 kb on + strand, within HMPREF1058_RS16815 at 588.971 kb on + strand, within HMPREF1058_RS16815 at 589.001 kb on + strand, within HMPREF1058_RS16815 at 589.001 kb on + strand, within HMPREF1058_RS16815 at 589.002 kb on - strand, within HMPREF1058_RS16815 at 589.005 kb on + strand, within HMPREF1058_RS16815 at 589.005 kb on + strand, within HMPREF1058_RS16815 at 589.005 kb on + strand at 589.006 kb on - strand, within HMPREF1058_RS16815 at 589.006 kb on - strand, within HMPREF1058_RS16815 at 589.006 kb on - strand, within HMPREF1058_RS16815 at 589.006 kb on - strand, within HMPREF1058_RS16815 at 589.008 kb on - strand, within HMPREF1058_RS16815 at 589.141 kb on + strand, within HMPREF1058_RS16815
Per-strain Table
Position Strand Gene LocusTag Fraction D-Mannose 10 mM (C) remove 585,496 - HMPREF1058_RS16830 0.42 +0.4 585,497 + HMPREF1058_RS16830 0.42 -2.4 585,516 + HMPREF1058_RS16830 0.44 -3.1 585,520 + HMPREF1058_RS16830 0.45 -3.1 585,521 - HMPREF1058_RS16830 0.45 +2.3 585,521 - HMPREF1058_RS16830 0.45 +2.5 585,521 - HMPREF1058_RS16830 0.45 +0.2 585,531 - HMPREF1058_RS16830 0.46 +0.7 585,533 + HMPREF1058_RS16830 0.47 -2.0 585,657 - HMPREF1058_RS16830 0.63 +2.1 585,707 - HMPREF1058_RS16830 0.70 +1.3 585,719 + HMPREF1058_RS16830 0.72 -5.1 585,720 - HMPREF1058_RS16830 0.72 +0.7 585,732 + HMPREF1058_RS16830 0.73 -6.2 585,758 + HMPREF1058_RS16830 0.77 -5.0 585,759 - HMPREF1058_RS16830 0.77 +1.1 585,780 - HMPREF1058_RS16830 0.80 +1.1 585,901 + -2.7 586,003 + HMPREF1058_RS16825 0.13 -3.9 586,004 - HMPREF1058_RS16825 0.14 -3.0 586,079 - HMPREF1058_RS16825 0.27 -1.4 586,133 + HMPREF1058_RS16825 0.37 -2.3 586,148 - HMPREF1058_RS16825 0.39 -3.7 586,210 - HMPREF1058_RS16825 0.51 -1.6 586,230 + HMPREF1058_RS16825 0.54 -4.4 586,252 - HMPREF1058_RS16825 0.58 -3.5 586,252 - HMPREF1058_RS16825 0.58 -2.7 586,331 - HMPREF1058_RS16825 0.72 -3.8 586,333 + HMPREF1058_RS16825 0.73 -1.3 586,334 - HMPREF1058_RS16825 0.73 -4.7 586,334 - HMPREF1058_RS16825 0.73 -4.0 586,334 - HMPREF1058_RS16825 0.73 -3.8 586,337 - HMPREF1058_RS16825 0.74 -2.7 586,339 - HMPREF1058_RS16825 0.74 -3.5 586,442 - -2.4 586,466 - -3.7 586,466 - -3.2 586,467 + -3.6 586,469 + -3.8 586,469 + -3.3 586,470 - -3.6 586,483 + -3.9 586,491 - +3.3 586,495 + -3.9 586,687 + HMPREF1058_RS16820 0.11 -0.8 586,736 + HMPREF1058_RS16820 0.14 -1.4 586,864 - HMPREF1058_RS16820 0.22 -3.4 586,869 + HMPREF1058_RS16820 0.22 -4.7 586,895 + HMPREF1058_RS16820 0.24 -1.7 586,905 - HMPREF1058_RS16820 0.24 -1.1 586,951 - HMPREF1058_RS16820 0.27 -2.2 586,967 + HMPREF1058_RS16820 0.28 -0.6 586,967 + HMPREF1058_RS16820 0.28 -0.3 586,968 - HMPREF1058_RS16820 0.28 -2.7 587,125 + HMPREF1058_RS16820 0.37 -2.8 587,153 + HMPREF1058_RS16820 0.39 -4.7 587,174 + HMPREF1058_RS16820 0.40 -1.6 587,175 - HMPREF1058_RS16820 0.40 -1.7 587,202 - HMPREF1058_RS16820 0.42 -3.9 587,206 - HMPREF1058_RS16820 0.42 -4.4 587,211 - HMPREF1058_RS16820 0.42 -3.3 587,226 + HMPREF1058_RS16820 0.43 -1.1 587,308 + HMPREF1058_RS16820 0.48 -3.1 587,308 + HMPREF1058_RS16820 0.48 -2.4 587,308 + HMPREF1058_RS16820 0.48 -2.7 587,308 + HMPREF1058_RS16820 0.48 -1.4 587,308 + HMPREF1058_RS16820 0.48 -3.8 587,309 + HMPREF1058_RS16820 0.48 -3.9 587,309 - HMPREF1058_RS16820 0.48 -3.2 587,309 - HMPREF1058_RS16820 0.48 -5.6 587,309 - HMPREF1058_RS16820 0.48 -1.6 587,348 + HMPREF1058_RS16820 0.50 -4.0 587,411 + HMPREF1058_RS16820 0.54 -3.5 587,412 - HMPREF1058_RS16820 0.54 -4.2 587,431 - HMPREF1058_RS16820 0.55 -5.6 587,500 - HMPREF1058_RS16820 0.59 -3.7 587,512 - HMPREF1058_RS16820 0.60 -4.5 587,640 - HMPREF1058_RS16820 0.67 -2.5 587,743 + HMPREF1058_RS16820 0.74 -2.4 587,743 + HMPREF1058_RS16820 0.74 -4.2 587,743 - HMPREF1058_RS16820 0.74 -4.6 587,811 - HMPREF1058_RS16820 0.78 +0.7 587,835 + HMPREF1058_RS16820 0.79 -2.4 587,916 - HMPREF1058_RS16820 0.84 -0.3 587,940 - HMPREF1058_RS16820 0.85 -3.2 588,045 + -1.1 588,045 + -2.4 588,046 - -3.9 588,046 - -2.7 588,046 - -1.6 588,047 + -3.2 588,048 - -1.7 588,059 + -2.4 588,074 - -5.6 588,075 + -0.3 588,099 - -3.3 588,129 + -2.0 588,267 + -2.3 588,336 - -4.6 588,339 - -3.0 588,359 + -3.7 588,463 - -2.5 588,464 + +0.7 588,519 - HMPREF1058_RS16815 0.13 -6.2 588,519 - HMPREF1058_RS16815 0.13 -3.4 588,608 - HMPREF1058_RS16815 0.18 -3.3 588,614 + HMPREF1058_RS16815 0.18 -3.9 588,614 + HMPREF1058_RS16815 0.18 -3.9 588,614 + HMPREF1058_RS16815 0.18 -1.4 588,691 - HMPREF1058_RS16815 0.22 -2.0 588,703 - -1.9 588,708 - HMPREF1058_RS16815 0.23 -1.9 588,851 + HMPREF1058_RS16815 0.31 -1.6 588,852 - HMPREF1058_RS16815 0.31 -3.3 588,853 + HMPREF1058_RS16815 0.31 -2.4 588,910 + HMPREF1058_RS16815 0.34 -4.5 588,936 + HMPREF1058_RS16815 0.36 -3.4 588,939 - HMPREF1058_RS16815 0.36 -3.6 588,967 + HMPREF1058_RS16815 0.37 -4.1 588,967 + HMPREF1058_RS16815 0.37 -0.9 588,971 + HMPREF1058_RS16815 0.38 -2.0 589,001 + HMPREF1058_RS16815 0.39 -3.2 589,001 + HMPREF1058_RS16815 0.39 -0.6 589,002 - HMPREF1058_RS16815 0.39 -3.3 589,005 + HMPREF1058_RS16815 0.40 -1.9 589,005 + HMPREF1058_RS16815 0.40 -3.9 589,005 + -1.1 589,006 - HMPREF1058_RS16815 0.40 -2.7 589,006 - HMPREF1058_RS16815 0.40 -2.7 589,006 - HMPREF1058_RS16815 0.40 -0.9 589,006 - HMPREF1058_RS16815 0.40 -3.2 589,008 - HMPREF1058_RS16815 0.40 -4.3 589,141 + HMPREF1058_RS16815 0.47 -1.3
Or see this region's nucleotide sequence