Experiment: D-Mannose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS16765 and HMPREF1058_RS16760 are separated by 20 nucleotides HMPREF1058_RS16760 and HMPREF1058_RS16755 are separated by 92 nucleotides HMPREF1058_RS16755 and HMPREF1058_RS16750 are separated by 18 nucleotides
HMPREF1058_RS16765: HMPREF1058_RS16765 - PhoH family protein, at 602,067 to 603,071
_RS16765
HMPREF1058_RS16760: HMPREF1058_RS16760 - phosphoribosylaminoimidazolesuccinocarboxamide synthase, at 603,092 to 604,036
_RS16760
HMPREF1058_RS16755: HMPREF1058_RS16755 - bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE, at 604,129 to 604,866
_RS16755
HMPREF1058_RS16750: HMPREF1058_RS16750 - shikimate dehydrogenase, at 604,885 to 605,625
_RS16750
Position (kb) 603
604
605 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 602.110 kb on + strand at 602.242 kb on + strand, within HMPREF1058_RS16765 at 602.242 kb on + strand, within HMPREF1058_RS16765 at 602.329 kb on + strand, within HMPREF1058_RS16765 at 602.329 kb on + strand, within HMPREF1058_RS16765 at 602.348 kb on + strand, within HMPREF1058_RS16765 at 602.348 kb on + strand, within HMPREF1058_RS16765 at 602.348 kb on + strand, within HMPREF1058_RS16765 at 602.353 kb on + strand, within HMPREF1058_RS16765 at 602.432 kb on + strand, within HMPREF1058_RS16765 at 602.470 kb on + strand, within HMPREF1058_RS16765 at 602.472 kb on + strand, within HMPREF1058_RS16765 at 602.472 kb on + strand, within HMPREF1058_RS16765 at 602.472 kb on + strand, within HMPREF1058_RS16765 at 602.611 kb on + strand, within HMPREF1058_RS16765 at 602.632 kb on + strand, within HMPREF1058_RS16765 at 602.639 kb on + strand, within HMPREF1058_RS16765 at 602.639 kb on + strand, within HMPREF1058_RS16765 at 602.708 kb on + strand, within HMPREF1058_RS16765 at 602.779 kb on + strand, within HMPREF1058_RS16765 at 602.780 kb on + strand, within HMPREF1058_RS16765 at 602.845 kb on + strand, within HMPREF1058_RS16765 at 602.947 kb on + strand, within HMPREF1058_RS16765 at 603.097 kb on + strand at 603.168 kb on + strand at 603.201 kb on + strand, within HMPREF1058_RS16760 at 603.214 kb on + strand, within HMPREF1058_RS16760 at 603.231 kb on + strand, within HMPREF1058_RS16760 at 603.364 kb on + strand, within HMPREF1058_RS16760 at 603.684 kb on + strand, within HMPREF1058_RS16760 at 603.721 kb on + strand, within HMPREF1058_RS16760 at 603.725 kb on + strand, within HMPREF1058_RS16760 at 603.826 kb on + strand, within HMPREF1058_RS16760 at 603.999 kb on + strand at 604.059 kb on + strand at 604.314 kb on + strand, within HMPREF1058_RS16755 at 604.314 kb on + strand, within HMPREF1058_RS16755 at 604.436 kb on + strand, within HMPREF1058_RS16755 at 604.521 kb on + strand, within HMPREF1058_RS16755 at 604.658 kb on + strand, within HMPREF1058_RS16755 at 604.660 kb on + strand, within HMPREF1058_RS16755
Per-strain Table
Position Strand Gene LocusTag Fraction D-Mannose 10 mM (C) remove 602,110 + -1.6 602,242 + HMPREF1058_RS16765 0.17 +0.5 602,242 + HMPREF1058_RS16765 0.17 -0.8 602,329 + HMPREF1058_RS16765 0.26 -1.2 602,329 + HMPREF1058_RS16765 0.26 -1.8 602,348 + HMPREF1058_RS16765 0.28 -0.2 602,348 + HMPREF1058_RS16765 0.28 -1.5 602,348 + HMPREF1058_RS16765 0.28 -0.2 602,353 + HMPREF1058_RS16765 0.28 -3.0 602,432 + HMPREF1058_RS16765 0.36 -0.9 602,470 + HMPREF1058_RS16765 0.40 -1.6 602,472 + HMPREF1058_RS16765 0.40 -1.8 602,472 + HMPREF1058_RS16765 0.40 -0.5 602,472 + HMPREF1058_RS16765 0.40 -3.2 602,611 + HMPREF1058_RS16765 0.54 +0.1 602,632 + HMPREF1058_RS16765 0.56 -1.3 602,639 + HMPREF1058_RS16765 0.57 -0.7 602,639 + HMPREF1058_RS16765 0.57 -0.9 602,708 + HMPREF1058_RS16765 0.64 -0.3 602,779 + HMPREF1058_RS16765 0.71 +1.3 602,780 + HMPREF1058_RS16765 0.71 -3.0 602,845 + HMPREF1058_RS16765 0.77 -1.6 602,947 + HMPREF1058_RS16765 0.88 -2.7 603,097 + -1.2 603,168 + -3.0 603,201 + HMPREF1058_RS16760 0.12 -2.3 603,214 + HMPREF1058_RS16760 0.13 -3.6 603,231 + HMPREF1058_RS16760 0.15 -1.1 603,364 + HMPREF1058_RS16760 0.29 -4.3 603,684 + HMPREF1058_RS16760 0.63 -2.6 603,721 + HMPREF1058_RS16760 0.67 -2.3 603,725 + HMPREF1058_RS16760 0.67 -4.4 603,826 + HMPREF1058_RS16760 0.78 -2.4 603,999 + -2.3 604,059 + -0.5 604,314 + HMPREF1058_RS16755 0.25 -0.6 604,314 + HMPREF1058_RS16755 0.25 -1.1 604,436 + HMPREF1058_RS16755 0.42 -2.1 604,521 + HMPREF1058_RS16755 0.53 -2.8 604,658 + HMPREF1058_RS16755 0.72 +0.0 604,660 + HMPREF1058_RS16755 0.72 -1.1
Or see this region's nucleotide sequence