Experiment: D-Mannose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS16630 and HMPREF1058_RS16625 are separated by 236 nucleotides HMPREF1058_RS16625 and HMPREF1058_RS16620 are separated by 18 nucleotides HMPREF1058_RS16620 and HMPREF1058_RS16615 are separated by 568 nucleotides
HMPREF1058_RS16630: HMPREF1058_RS16630 - DMP19 family protein, at 631,703 to 632,212
_RS16630
HMPREF1058_RS16625: HMPREF1058_RS16625 - hypothetical protein, at 632,449 to 633,150
_RS16625
HMPREF1058_RS16620: HMPREF1058_RS16620 - GGGtGRT protein, at 633,169 to 634,179
_RS16620
HMPREF1058_RS16615: HMPREF1058_RS16615 - DUF4857 domain-containing protein, at 634,748 to 635,776
_RS16615
Position (kb) 633
634
635 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 632.216 kb on + strand at 632.222 kb on + strand at 632.222 kb on + strand at 632.223 kb on - strand at 632.224 kb on + strand at 632.224 kb on + strand at 632.224 kb on + strand at 632.225 kb on - strand at 632.228 kb on - strand at 632.229 kb on + strand at 632.234 kb on - strand at 632.280 kb on + strand at 632.316 kb on + strand at 632.321 kb on - strand at 632.327 kb on - strand at 632.390 kb on + strand at 632.417 kb on + strand at 632.616 kb on + strand, within HMPREF1058_RS16625 at 632.621 kb on + strand, within HMPREF1058_RS16625 at 632.633 kb on + strand, within HMPREF1058_RS16625 at 632.633 kb on + strand, within HMPREF1058_RS16625 at 632.736 kb on - strand, within HMPREF1058_RS16625 at 632.900 kb on + strand, within HMPREF1058_RS16625 at 632.904 kb on + strand, within HMPREF1058_RS16625 at 632.905 kb on - strand, within HMPREF1058_RS16625 at 632.905 kb on - strand, within HMPREF1058_RS16625 at 632.911 kb on + strand, within HMPREF1058_RS16625 at 632.911 kb on + strand, within HMPREF1058_RS16625 at 632.973 kb on - strand, within HMPREF1058_RS16625 at 633.169 kb on - strand at 633.300 kb on + strand, within HMPREF1058_RS16620 at 633.300 kb on + strand, within HMPREF1058_RS16620 at 633.324 kb on + strand, within HMPREF1058_RS16620 at 633.325 kb on - strand, within HMPREF1058_RS16620 at 633.445 kb on - strand, within HMPREF1058_RS16620 at 633.505 kb on - strand, within HMPREF1058_RS16620 at 633.525 kb on + strand, within HMPREF1058_RS16620 at 633.609 kb on - strand, within HMPREF1058_RS16620 at 633.612 kb on + strand, within HMPREF1058_RS16620 at 633.630 kb on + strand, within HMPREF1058_RS16620 at 633.675 kb on + strand, within HMPREF1058_RS16620 at 633.687 kb on + strand, within HMPREF1058_RS16620 at 633.735 kb on - strand, within HMPREF1058_RS16620 at 633.816 kb on + strand, within HMPREF1058_RS16620 at 633.817 kb on - strand, within HMPREF1058_RS16620 at 633.836 kb on + strand, within HMPREF1058_RS16620 at 633.861 kb on + strand, within HMPREF1058_RS16620 at 633.897 kb on + strand, within HMPREF1058_RS16620 at 633.898 kb on - strand, within HMPREF1058_RS16620 at 633.901 kb on + strand, within HMPREF1058_RS16620 at 633.901 kb on + strand, within HMPREF1058_RS16620 at 633.902 kb on - strand, within HMPREF1058_RS16620 at 633.927 kb on + strand, within HMPREF1058_RS16620 at 633.969 kb on + strand, within HMPREF1058_RS16620 at 634.035 kb on + strand, within HMPREF1058_RS16620 at 634.035 kb on + strand, within HMPREF1058_RS16620 at 634.127 kb on + strand at 634.157 kb on + strand at 634.177 kb on + strand at 634.177 kb on + strand at 634.180 kb on + strand at 634.181 kb on - strand at 634.185 kb on + strand at 634.186 kb on - strand at 634.193 kb on + strand at 634.201 kb on - strand at 634.201 kb on - strand at 634.201 kb on - strand at 634.365 kb on + strand at 634.415 kb on + strand at 634.483 kb on - strand at 634.483 kb on - strand at 634.504 kb on + strand at 634.505 kb on - strand at 634.507 kb on + strand at 634.508 kb on - strand at 634.547 kb on + strand at 634.552 kb on + strand at 634.557 kb on - strand at 634.609 kb on + strand at 634.610 kb on - strand at 634.610 kb on - strand at 634.612 kb on - strand at 634.707 kb on - strand at 634.711 kb on + strand at 634.711 kb on + strand at 634.718 kb on + strand at 634.856 kb on - strand, within HMPREF1058_RS16615 at 634.869 kb on + strand, within HMPREF1058_RS16615 at 634.872 kb on + strand, within HMPREF1058_RS16615 at 634.875 kb on + strand, within HMPREF1058_RS16615 at 634.875 kb on + strand, within HMPREF1058_RS16615 at 634.875 kb on + strand, within HMPREF1058_RS16615 at 634.876 kb on - strand, within HMPREF1058_RS16615 at 634.876 kb on - strand, within HMPREF1058_RS16615 at 634.896 kb on - strand, within HMPREF1058_RS16615 at 634.918 kb on + strand, within HMPREF1058_RS16615 at 634.999 kb on + strand, within HMPREF1058_RS16615 at 635.025 kb on - strand, within HMPREF1058_RS16615 at 635.029 kb on + strand, within HMPREF1058_RS16615 at 635.029 kb on + strand at 635.066 kb on - strand, within HMPREF1058_RS16615 at 635.073 kb on + strand, within HMPREF1058_RS16615 at 635.074 kb on - strand, within HMPREF1058_RS16615 at 635.152 kb on + strand, within HMPREF1058_RS16615 at 635.153 kb on - strand, within HMPREF1058_RS16615 at 635.166 kb on - strand, within HMPREF1058_RS16615 at 635.176 kb on - strand, within HMPREF1058_RS16615
Per-strain Table
Position Strand Gene LocusTag Fraction D-Mannose 10 mM (C) remove 632,216 + +0.9 632,222 + +0.5 632,222 + +0.3 632,223 - +0.3 632,224 + +0.7 632,224 + +0.8 632,224 + +0.2 632,225 - -2.0 632,228 - -0.1 632,229 + +0.3 632,234 - +0.5 632,280 + +0.1 632,316 + -0.8 632,321 - -0.1 632,327 - -2.6 632,390 + -1.4 632,417 + -2.0 632,616 + HMPREF1058_RS16625 0.24 -2.0 632,621 + HMPREF1058_RS16625 0.25 -3.2 632,633 + HMPREF1058_RS16625 0.26 -3.1 632,633 + HMPREF1058_RS16625 0.26 -1.9 632,736 - HMPREF1058_RS16625 0.41 -2.5 632,900 + HMPREF1058_RS16625 0.64 -2.0 632,904 + HMPREF1058_RS16625 0.65 -3.0 632,905 - HMPREF1058_RS16625 0.65 -2.5 632,905 - HMPREF1058_RS16625 0.65 -1.7 632,911 + HMPREF1058_RS16625 0.66 -4.5 632,911 + HMPREF1058_RS16625 0.66 +0.8 632,973 - HMPREF1058_RS16625 0.75 -1.8 633,169 - -1.0 633,300 + HMPREF1058_RS16620 0.13 +1.8 633,300 + HMPREF1058_RS16620 0.13 -2.9 633,324 + HMPREF1058_RS16620 0.15 -3.2 633,325 - HMPREF1058_RS16620 0.15 -2.8 633,445 - HMPREF1058_RS16620 0.27 +1.6 633,505 - HMPREF1058_RS16620 0.33 +0.9 633,525 + HMPREF1058_RS16620 0.35 -2.7 633,609 - HMPREF1058_RS16620 0.44 -3.4 633,612 + HMPREF1058_RS16620 0.44 -2.9 633,630 + HMPREF1058_RS16620 0.46 -0.4 633,675 + HMPREF1058_RS16620 0.50 -1.1 633,687 + HMPREF1058_RS16620 0.51 -1.6 633,735 - HMPREF1058_RS16620 0.56 -1.5 633,816 + HMPREF1058_RS16620 0.64 -1.0 633,817 - HMPREF1058_RS16620 0.64 +0.8 633,836 + HMPREF1058_RS16620 0.66 -2.5 633,861 + HMPREF1058_RS16620 0.68 -2.7 633,897 + HMPREF1058_RS16620 0.72 -3.0 633,898 - HMPREF1058_RS16620 0.72 -1.5 633,901 + HMPREF1058_RS16620 0.72 -2.8 633,901 + HMPREF1058_RS16620 0.72 -3.6 633,902 - HMPREF1058_RS16620 0.73 -2.3 633,927 + HMPREF1058_RS16620 0.75 -2.2 633,969 + HMPREF1058_RS16620 0.79 +1.2 634,035 + HMPREF1058_RS16620 0.86 -2.1 634,035 + HMPREF1058_RS16620 0.86 -2.3 634,127 + -3.9 634,157 + -1.1 634,177 + -1.5 634,177 + -1.4 634,180 + -3.6 634,181 - -0.1 634,185 + -1.3 634,186 - -0.7 634,193 + -1.4 634,201 - -1.7 634,201 - -1.1 634,201 - -0.7 634,365 + -0.6 634,415 + -0.2 634,483 - +1.1 634,483 - +0.8 634,504 + -0.7 634,505 - -0.6 634,507 + +0.7 634,508 - +0.0 634,547 + +0.1 634,552 + +0.2 634,557 - +0.1 634,609 + +0.6 634,610 - -0.9 634,610 - -0.1 634,612 - +1.0 634,707 - -0.1 634,711 + -2.2 634,711 + -0.6 634,718 + -2.9 634,856 - HMPREF1058_RS16615 0.10 +0.9 634,869 + HMPREF1058_RS16615 0.12 -1.7 634,872 + HMPREF1058_RS16615 0.12 -0.7 634,875 + HMPREF1058_RS16615 0.12 +0.1 634,875 + HMPREF1058_RS16615 0.12 +0.2 634,875 + HMPREF1058_RS16615 0.12 -0.5 634,876 - HMPREF1058_RS16615 0.12 -1.0 634,876 - HMPREF1058_RS16615 0.12 +1.4 634,896 - HMPREF1058_RS16615 0.14 -1.9 634,918 + HMPREF1058_RS16615 0.17 -0.2 634,999 + HMPREF1058_RS16615 0.24 -0.1 635,025 - HMPREF1058_RS16615 0.27 -0.4 635,029 + HMPREF1058_RS16615 0.27 +1.3 635,029 + -1.0 635,066 - HMPREF1058_RS16615 0.31 -0.2 635,073 + HMPREF1058_RS16615 0.32 -1.1 635,074 - HMPREF1058_RS16615 0.32 -0.2 635,152 + HMPREF1058_RS16615 0.39 -0.1 635,153 - HMPREF1058_RS16615 0.39 -0.4 635,166 - HMPREF1058_RS16615 0.41 +0.5 635,176 - HMPREF1058_RS16615 0.42 -0.0
Or see this region's nucleotide sequence