Experiment: D-Mannose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS10170 and HMPREF1058_RS10165 are separated by 34 nucleotides HMPREF1058_RS10165 and HMPREF1058_RS10160 are separated by 61 nucleotides HMPREF1058_RS10160 and HMPREF1058_RS10155 are separated by 29 nucleotides HMPREF1058_RS10155 and HMPREF1058_RS10145 are separated by 367 nucleotides
HMPREF1058_RS10170: HMPREF1058_RS10170 - ATP-binding protein, at 712,463 to 713,008
_RS10170
HMPREF1058_RS10165: HMPREF1058_RS10165 - hypothetical protein, at 713,043 to 713,825
_RS10165
HMPREF1058_RS10160: HMPREF1058_RS10160 - hypothetical protein, at 713,887 to 714,645
_RS10160
HMPREF1058_RS10155: HMPREF1058_RS10155 - hypothetical protein, at 714,675 to 715,103
_RS10155
HMPREF1058_RS10145: HMPREF1058_RS10145 - hypothetical protein, at 715,471 to 716,052
_RS10145
Position (kb) 713
714
715 Strain fitness (log2 ratio) -2
-1
0
1
2 at 712.889 kb on + strand, within HMPREF1058_RS10170 at 712.896 kb on + strand, within HMPREF1058_RS10170 at 712.966 kb on + strand at 712.999 kb on + strand at 712.999 kb on + strand at 712.999 kb on + strand at 712.999 kb on + strand at 713.000 kb on - strand at 713.039 kb on + strand at 713.119 kb on + strand at 713.119 kb on + strand at 713.127 kb on + strand, within HMPREF1058_RS10165 at 713.209 kb on + strand, within HMPREF1058_RS10165 at 713.209 kb on + strand, within HMPREF1058_RS10165 at 713.275 kb on + strand, within HMPREF1058_RS10165 at 713.308 kb on + strand, within HMPREF1058_RS10165 at 713.531 kb on + strand, within HMPREF1058_RS10165 at 713.546 kb on + strand, within HMPREF1058_RS10165 at 713.546 kb on + strand, within HMPREF1058_RS10165 at 713.583 kb on + strand, within HMPREF1058_RS10165 at 713.624 kb on + strand, within HMPREF1058_RS10165 at 713.628 kb on + strand, within HMPREF1058_RS10165 at 713.681 kb on + strand, within HMPREF1058_RS10165 at 713.708 kb on + strand, within HMPREF1058_RS10165 at 713.708 kb on + strand, within HMPREF1058_RS10165 at 713.708 kb on + strand, within HMPREF1058_RS10165 at 713.710 kb on + strand, within HMPREF1058_RS10165 at 713.710 kb on + strand, within HMPREF1058_RS10165 at 713.710 kb on + strand, within HMPREF1058_RS10165 at 713.949 kb on + strand at 713.955 kb on + strand at 714.312 kb on + strand, within HMPREF1058_RS10160 at 714.456 kb on + strand, within HMPREF1058_RS10160 at 714.572 kb on + strand at 714.572 kb on + strand at 714.740 kb on + strand, within HMPREF1058_RS10155 at 714.773 kb on + strand, within HMPREF1058_RS10155 at 714.804 kb on + strand, within HMPREF1058_RS10155 at 715.092 kb on + strand at 715.092 kb on + strand at 715.121 kb on + strand at 715.193 kb on + strand at 715.204 kb on + strand at 715.283 kb on + strand at 715.289 kb on + strand at 715.303 kb on + strand at 715.489 kb on + strand at 715.592 kb on + strand, within HMPREF1058_RS10145
Per-strain Table
Position Strand Gene LocusTag Fraction D-Mannose 10 mM (C) remove 712,889 + HMPREF1058_RS10170 0.78 -0.7 712,896 + HMPREF1058_RS10170 0.79 -0.1 712,966 + -0.0 712,999 + -1.5 712,999 + -0.1 712,999 + +0.3 712,999 + -0.1 713,000 - -0.8 713,039 + -0.3 713,119 + +0.5 713,119 + +0.4 713,127 + HMPREF1058_RS10165 0.11 +0.1 713,209 + HMPREF1058_RS10165 0.21 +0.7 713,209 + HMPREF1058_RS10165 0.21 +0.5 713,275 + HMPREF1058_RS10165 0.30 -0.1 713,308 + HMPREF1058_RS10165 0.34 +0.0 713,531 + HMPREF1058_RS10165 0.62 -1.2 713,546 + HMPREF1058_RS10165 0.64 +0.1 713,546 + HMPREF1058_RS10165 0.64 +0.3 713,583 + HMPREF1058_RS10165 0.69 +0.9 713,624 + HMPREF1058_RS10165 0.74 +1.2 713,628 + HMPREF1058_RS10165 0.75 -0.6 713,681 + HMPREF1058_RS10165 0.81 +0.1 713,708 + HMPREF1058_RS10165 0.85 -0.8 713,708 + HMPREF1058_RS10165 0.85 +0.3 713,708 + HMPREF1058_RS10165 0.85 +0.1 713,710 + HMPREF1058_RS10165 0.85 +1.7 713,710 + HMPREF1058_RS10165 0.85 +0.1 713,710 + HMPREF1058_RS10165 0.85 -0.3 713,949 + +0.4 713,955 + -2.2 714,312 + HMPREF1058_RS10160 0.56 +0.8 714,456 + HMPREF1058_RS10160 0.75 -2.2 714,572 + -0.5 714,572 + -0.4 714,740 + HMPREF1058_RS10155 0.15 -0.1 714,773 + HMPREF1058_RS10155 0.23 +2.0 714,804 + HMPREF1058_RS10155 0.30 -0.1 715,092 + -1.1 715,092 + +1.0 715,121 + -0.4 715,193 + -1.0 715,204 + -0.2 715,283 + +0.4 715,289 + -1.2 715,303 + -0.6 715,489 + +0.6 715,592 + HMPREF1058_RS10145 0.21 +0.4
Or see this region's nucleotide sequence