Experiment: D-Mannose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS09690 and HMPREF1058_RS09685 are separated by 153 nucleotides HMPREF1058_RS09685 and HMPREF1058_RS09680 are separated by 141 nucleotides
HMPREF1058_RS09690: HMPREF1058_RS09690 - DUF4369 domain-containing protein, at 819,924 to 820,991
_RS09690
HMPREF1058_RS09685: HMPREF1058_RS09685 - tetratricopeptide repeat protein, at 821,145 to 822,821
_RS09685
HMPREF1058_RS09680: HMPREF1058_RS09680 - site-specific tyrosine recombinase XerD, at 822,963 to 823,904
_RS09680
Position (kb) 821
822
823 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 820.267 kb on - strand, within HMPREF1058_RS09690 at 820.446 kb on + strand, within HMPREF1058_RS09690 at 820.447 kb on - strand, within HMPREF1058_RS09690 at 820.447 kb on - strand, within HMPREF1058_RS09690 at 820.449 kb on - strand, within HMPREF1058_RS09690 at 820.451 kb on + strand, within HMPREF1058_RS09690 at 820.452 kb on - strand at 820.453 kb on + strand, within HMPREF1058_RS09690 at 820.453 kb on + strand, within HMPREF1058_RS09690 at 820.453 kb on + strand, within HMPREF1058_RS09690 at 820.454 kb on - strand, within HMPREF1058_RS09690 at 820.468 kb on - strand, within HMPREF1058_RS09690 at 820.500 kb on + strand, within HMPREF1058_RS09690 at 820.501 kb on - strand, within HMPREF1058_RS09690 at 820.501 kb on - strand, within HMPREF1058_RS09690 at 820.510 kb on + strand, within HMPREF1058_RS09690 at 820.530 kb on + strand, within HMPREF1058_RS09690 at 820.557 kb on - strand, within HMPREF1058_RS09690 at 820.557 kb on - strand, within HMPREF1058_RS09690 at 820.623 kb on - strand, within HMPREF1058_RS09690 at 820.643 kb on - strand, within HMPREF1058_RS09690 at 820.649 kb on + strand, within HMPREF1058_RS09690 at 820.649 kb on + strand, within HMPREF1058_RS09690 at 820.650 kb on - strand, within HMPREF1058_RS09690 at 820.650 kb on - strand, within HMPREF1058_RS09690 at 820.741 kb on + strand, within HMPREF1058_RS09690 at 820.741 kb on + strand, within HMPREF1058_RS09690 at 820.742 kb on - strand, within HMPREF1058_RS09690 at 820.742 kb on - strand, within HMPREF1058_RS09690 at 820.743 kb on + strand, within HMPREF1058_RS09690 at 820.774 kb on - strand, within HMPREF1058_RS09690 at 820.785 kb on - strand, within HMPREF1058_RS09690 at 820.810 kb on + strand, within HMPREF1058_RS09690 at 820.816 kb on - strand, within HMPREF1058_RS09690 at 820.837 kb on - strand, within HMPREF1058_RS09690 at 820.837 kb on - strand, within HMPREF1058_RS09690 at 820.878 kb on + strand, within HMPREF1058_RS09690 at 820.879 kb on - strand, within HMPREF1058_RS09690 at 820.880 kb on + strand, within HMPREF1058_RS09690 at 820.880 kb on + strand, within HMPREF1058_RS09690 at 820.881 kb on - strand, within HMPREF1058_RS09690 at 820.881 kb on - strand, within HMPREF1058_RS09690 at 820.881 kb on - strand, within HMPREF1058_RS09690 at 820.881 kb on - strand, within HMPREF1058_RS09690 at 820.902 kb on - strand at 821.039 kb on + strand at 821.041 kb on + strand at 821.041 kb on + strand at 821.042 kb on - strand at 821.138 kb on - strand at 821.138 kb on - strand at 821.138 kb on - strand at 821.141 kb on + strand at 821.141 kb on + strand at 821.142 kb on - strand at 821.144 kb on - strand at 821.164 kb on + strand at 821.330 kb on + strand, within HMPREF1058_RS09685 at 821.330 kb on + strand, within HMPREF1058_RS09685 at 821.331 kb on - strand, within HMPREF1058_RS09685 at 821.385 kb on - strand, within HMPREF1058_RS09685 at 821.440 kb on + strand, within HMPREF1058_RS09685 at 821.440 kb on + strand, within HMPREF1058_RS09685 at 821.440 kb on + strand, within HMPREF1058_RS09685 at 821.442 kb on + strand, within HMPREF1058_RS09685 at 821.442 kb on + strand, within HMPREF1058_RS09685 at 821.442 kb on + strand, within HMPREF1058_RS09685 at 821.443 kb on - strand, within HMPREF1058_RS09685 at 821.443 kb on - strand, within HMPREF1058_RS09685 at 821.443 kb on - strand, within HMPREF1058_RS09685 at 821.443 kb on - strand, within HMPREF1058_RS09685 at 821.443 kb on - strand at 821.443 kb on - strand, within HMPREF1058_RS09685 at 821.553 kb on + strand, within HMPREF1058_RS09685 at 821.577 kb on - strand, within HMPREF1058_RS09685 at 821.649 kb on - strand, within HMPREF1058_RS09685 at 821.651 kb on + strand, within HMPREF1058_RS09685 at 821.652 kb on - strand, within HMPREF1058_RS09685 at 821.652 kb on - strand, within HMPREF1058_RS09685 at 821.654 kb on - strand, within HMPREF1058_RS09685 at 821.741 kb on - strand, within HMPREF1058_RS09685 at 821.741 kb on - strand, within HMPREF1058_RS09685 at 821.764 kb on - strand, within HMPREF1058_RS09685 at 821.824 kb on + strand, within HMPREF1058_RS09685 at 821.824 kb on + strand, within HMPREF1058_RS09685 at 821.835 kb on + strand, within HMPREF1058_RS09685 at 821.897 kb on + strand, within HMPREF1058_RS09685 at 821.940 kb on - strand, within HMPREF1058_RS09685 at 821.952 kb on + strand, within HMPREF1058_RS09685 at 821.952 kb on + strand, within HMPREF1058_RS09685 at 821.985 kb on - strand, within HMPREF1058_RS09685 at 822.026 kb on - strand, within HMPREF1058_RS09685 at 822.026 kb on - strand, within HMPREF1058_RS09685 at 822.041 kb on + strand, within HMPREF1058_RS09685 at 822.079 kb on + strand, within HMPREF1058_RS09685 at 822.080 kb on - strand, within HMPREF1058_RS09685 at 822.182 kb on - strand, within HMPREF1058_RS09685 at 822.340 kb on + strand, within HMPREF1058_RS09685 at 822.416 kb on + strand, within HMPREF1058_RS09685 at 822.416 kb on + strand, within HMPREF1058_RS09685 at 822.417 kb on - strand, within HMPREF1058_RS09685 at 822.421 kb on + strand, within HMPREF1058_RS09685 at 822.488 kb on - strand, within HMPREF1058_RS09685 at 822.529 kb on + strand, within HMPREF1058_RS09685 at 822.530 kb on - strand, within HMPREF1058_RS09685 at 822.675 kb on - strand at 822.805 kb on + strand at 822.806 kb on - strand at 822.821 kb on + strand at 822.825 kb on + strand at 822.825 kb on + strand at 822.825 kb on + strand at 822.826 kb on - strand at 822.861 kb on + strand at 822.863 kb on + strand at 822.899 kb on - strand at 822.913 kb on + strand at 822.914 kb on - strand at 822.915 kb on + strand at 822.915 kb on + strand at 822.915 kb on + strand at 822.916 kb on - strand at 822.916 kb on - strand at 822.983 kb on + strand at 823.039 kb on - strand at 823.055 kb on + strand at 823.100 kb on + strand, within HMPREF1058_RS09680 at 823.100 kb on + strand, within HMPREF1058_RS09680 at 823.101 kb on - strand, within HMPREF1058_RS09680 at 823.101 kb on - strand, within HMPREF1058_RS09680 at 823.101 kb on - strand, within HMPREF1058_RS09680 at 823.101 kb on - strand at 823.321 kb on + strand, within HMPREF1058_RS09680 at 823.355 kb on + strand, within HMPREF1058_RS09680 at 823.377 kb on - strand, within HMPREF1058_RS09680 at 823.469 kb on - strand, within HMPREF1058_RS09680 at 823.543 kb on - strand, within HMPREF1058_RS09680 at 823.810 kb on + strand at 823.810 kb on + strand at 823.811 kb on - strand at 823.819 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Mannose 10 mM (C) remove 820,267 - HMPREF1058_RS09690 0.32 -3.2 820,446 + HMPREF1058_RS09690 0.49 -2.0 820,447 - HMPREF1058_RS09690 0.49 +0.5 820,447 - HMPREF1058_RS09690 0.49 -2.4 820,449 - HMPREF1058_RS09690 0.49 +1.9 820,451 + HMPREF1058_RS09690 0.49 -0.5 820,452 - -0.7 820,453 + HMPREF1058_RS09690 0.50 -1.7 820,453 + HMPREF1058_RS09690 0.50 -2.3 820,453 + HMPREF1058_RS09690 0.50 -2.3 820,454 - HMPREF1058_RS09690 0.50 +0.5 820,468 - HMPREF1058_RS09690 0.51 -2.2 820,500 + HMPREF1058_RS09690 0.54 -0.8 820,501 - HMPREF1058_RS09690 0.54 -1.4 820,501 - HMPREF1058_RS09690 0.54 -5.3 820,510 + HMPREF1058_RS09690 0.55 -2.3 820,530 + HMPREF1058_RS09690 0.57 -2.5 820,557 - HMPREF1058_RS09690 0.59 -3.0 820,557 - HMPREF1058_RS09690 0.59 -2.2 820,623 - HMPREF1058_RS09690 0.65 -2.6 820,643 - HMPREF1058_RS09690 0.67 -2.2 820,649 + HMPREF1058_RS09690 0.68 -1.3 820,649 + HMPREF1058_RS09690 0.68 -2.4 820,650 - HMPREF1058_RS09690 0.68 -1.2 820,650 - HMPREF1058_RS09690 0.68 -1.1 820,741 + HMPREF1058_RS09690 0.76 -3.2 820,741 + HMPREF1058_RS09690 0.76 -1.6 820,742 - HMPREF1058_RS09690 0.77 -2.4 820,742 - HMPREF1058_RS09690 0.77 -1.3 820,743 + HMPREF1058_RS09690 0.77 -0.4 820,774 - HMPREF1058_RS09690 0.80 -2.8 820,785 - HMPREF1058_RS09690 0.81 -2.3 820,810 + HMPREF1058_RS09690 0.83 -1.9 820,816 - HMPREF1058_RS09690 0.84 -2.6 820,837 - HMPREF1058_RS09690 0.85 -3.1 820,837 - HMPREF1058_RS09690 0.85 -2.1 820,878 + HMPREF1058_RS09690 0.89 -0.3 820,879 - HMPREF1058_RS09690 0.89 -3.1 820,880 + HMPREF1058_RS09690 0.90 -2.6 820,880 + HMPREF1058_RS09690 0.90 -2.4 820,881 - HMPREF1058_RS09690 0.90 -2.3 820,881 - HMPREF1058_RS09690 0.90 -3.2 820,881 - HMPREF1058_RS09690 0.90 -3.0 820,881 - HMPREF1058_RS09690 0.90 -0.6 820,902 - -1.7 821,039 + -1.5 821,041 + -0.1 821,041 + -3.0 821,042 - -2.4 821,138 - -0.6 821,138 - -0.3 821,138 - +0.5 821,141 + -2.1 821,141 + -2.8 821,142 - -1.2 821,144 - +0.1 821,164 + -2.8 821,330 + HMPREF1058_RS09685 0.11 -2.7 821,330 + HMPREF1058_RS09685 0.11 +0.4 821,331 - HMPREF1058_RS09685 0.11 -1.1 821,385 - HMPREF1058_RS09685 0.14 -1.1 821,440 + HMPREF1058_RS09685 0.18 -1.8 821,440 + HMPREF1058_RS09685 0.18 -2.1 821,440 + HMPREF1058_RS09685 0.18 -1.6 821,442 + HMPREF1058_RS09685 0.18 -1.9 821,442 + HMPREF1058_RS09685 0.18 -1.8 821,442 + HMPREF1058_RS09685 0.18 -2.7 821,443 - HMPREF1058_RS09685 0.18 -3.6 821,443 - HMPREF1058_RS09685 0.18 -2.4 821,443 - HMPREF1058_RS09685 0.18 -2.9 821,443 - HMPREF1058_RS09685 0.18 -3.6 821,443 - -0.1 821,443 - HMPREF1058_RS09685 0.18 -2.3 821,553 + HMPREF1058_RS09685 0.24 -3.1 821,577 - HMPREF1058_RS09685 0.26 -3.1 821,649 - HMPREF1058_RS09685 0.30 -1.9 821,651 + HMPREF1058_RS09685 0.30 -2.6 821,652 - HMPREF1058_RS09685 0.30 -2.7 821,652 - HMPREF1058_RS09685 0.30 -2.7 821,654 - HMPREF1058_RS09685 0.30 -1.8 821,741 - HMPREF1058_RS09685 0.36 -3.4 821,741 - HMPREF1058_RS09685 0.36 +0.3 821,764 - HMPREF1058_RS09685 0.37 -4.1 821,824 + HMPREF1058_RS09685 0.40 -3.5 821,824 + HMPREF1058_RS09685 0.40 -0.1 821,835 + HMPREF1058_RS09685 0.41 -1.0 821,897 + HMPREF1058_RS09685 0.45 -2.1 821,940 - HMPREF1058_RS09685 0.47 -0.5 821,952 + HMPREF1058_RS09685 0.48 +0.8 821,952 + HMPREF1058_RS09685 0.48 -2.8 821,985 - HMPREF1058_RS09685 0.50 -1.4 822,026 - HMPREF1058_RS09685 0.53 -0.9 822,026 - HMPREF1058_RS09685 0.53 -2.5 822,041 + HMPREF1058_RS09685 0.53 -1.3 822,079 + HMPREF1058_RS09685 0.56 -2.2 822,080 - HMPREF1058_RS09685 0.56 -1.6 822,182 - HMPREF1058_RS09685 0.62 -1.5 822,340 + HMPREF1058_RS09685 0.71 -1.9 822,416 + HMPREF1058_RS09685 0.76 -2.9 822,416 + HMPREF1058_RS09685 0.76 -3.7 822,417 - HMPREF1058_RS09685 0.76 -0.8 822,421 + HMPREF1058_RS09685 0.76 -1.7 822,488 - HMPREF1058_RS09685 0.80 -2.6 822,529 + HMPREF1058_RS09685 0.83 -1.8 822,530 - HMPREF1058_RS09685 0.83 -3.0 822,675 - -1.9 822,805 + -3.0 822,806 - -4.2 822,821 + -4.4 822,825 + -1.9 822,825 + -3.0 822,825 + -1.1 822,826 - -2.4 822,861 + -1.8 822,863 + -3.5 822,899 - -1.4 822,913 + -3.3 822,914 - -1.3 822,915 + -1.2 822,915 + -2.2 822,915 + -2.4 822,916 - +0.1 822,916 - -1.3 822,983 + -1.2 823,039 - -0.9 823,055 + -1.8 823,100 + HMPREF1058_RS09680 0.15 -1.3 823,100 + HMPREF1058_RS09680 0.15 +0.3 823,101 - HMPREF1058_RS09680 0.15 -1.6 823,101 - HMPREF1058_RS09680 0.15 -1.1 823,101 - HMPREF1058_RS09680 0.15 -1.8 823,101 - -0.1 823,321 + HMPREF1058_RS09680 0.38 -1.9 823,355 + HMPREF1058_RS09680 0.42 -0.2 823,377 - HMPREF1058_RS09680 0.44 -0.9 823,469 - HMPREF1058_RS09680 0.54 -0.8 823,543 - HMPREF1058_RS09680 0.62 -3.5 823,810 + -1.3 823,810 + +1.3 823,811 - -1.7 823,819 - -2.1
Or see this region's nucleotide sequence