Experiment: D-Mannose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS07215 and HMPREF1058_RS07210 are separated by 18 nucleotides HMPREF1058_RS07210 and HMPREF1058_RS07205 are separated by 196 nucleotides HMPREF1058_RS07205 and HMPREF1058_RS07200 are separated by 277 nucleotides
HMPREF1058_RS07215: HMPREF1058_RS07215 - two-component sensor histidine kinase, at 286,205 to 287,986
_RS07215
HMPREF1058_RS07210: HMPREF1058_RS07210 - response regulator transcription factor, at 288,005 to 288,694
_RS07210
HMPREF1058_RS07205: HMPREF1058_RS07205 - type I asparaginase, at 288,891 to 289,934
_RS07205
HMPREF1058_RS07200: HMPREF1058_RS07200 - tryptophan synthase subunit alpha, at 290,212 to 290,988
_RS07200
Position (kb) 288
289
290 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 287.939 kb on + strand at 287.940 kb on - strand at 287.977 kb on + strand at 288.120 kb on + strand, within HMPREF1058_RS07210 at 288.120 kb on + strand, within HMPREF1058_RS07210 at 288.120 kb on + strand, within HMPREF1058_RS07210 at 288.120 kb on + strand, within HMPREF1058_RS07210 at 288.121 kb on - strand, within HMPREF1058_RS07210 at 288.151 kb on + strand, within HMPREF1058_RS07210 at 288.185 kb on + strand, within HMPREF1058_RS07210 at 288.242 kb on + strand, within HMPREF1058_RS07210 at 288.243 kb on - strand, within HMPREF1058_RS07210 at 288.273 kb on - strand, within HMPREF1058_RS07210 at 288.291 kb on - strand, within HMPREF1058_RS07210 at 288.388 kb on + strand, within HMPREF1058_RS07210 at 288.391 kb on - strand, within HMPREF1058_RS07210 at 288.694 kb on + strand at 288.694 kb on + strand at 288.695 kb on - strand at 288.695 kb on - strand at 288.696 kb on + strand at 288.697 kb on - strand at 288.708 kb on + strand at 288.711 kb on + strand at 288.715 kb on - strand at 288.767 kb on + strand at 288.874 kb on - strand at 288.887 kb on + strand at 288.940 kb on - strand at 289.005 kb on - strand, within HMPREF1058_RS07205 at 289.181 kb on - strand, within HMPREF1058_RS07205 at 289.192 kb on - strand, within HMPREF1058_RS07205 at 289.215 kb on - strand, within HMPREF1058_RS07205 at 289.267 kb on - strand, within HMPREF1058_RS07205 at 289.346 kb on - strand, within HMPREF1058_RS07205 at 289.479 kb on + strand, within HMPREF1058_RS07205 at 289.484 kb on + strand, within HMPREF1058_RS07205 at 289.485 kb on - strand, within HMPREF1058_RS07205 at 289.516 kb on - strand, within HMPREF1058_RS07205 at 289.642 kb on + strand at 289.643 kb on - strand, within HMPREF1058_RS07205 at 289.699 kb on + strand, within HMPREF1058_RS07205 at 289.897 kb on + strand at 289.897 kb on + strand at 289.949 kb on + strand at 289.973 kb on + strand at 289.974 kb on - strand at 289.974 kb on - strand at 289.983 kb on + strand at 290.034 kb on + strand at 290.035 kb on - strand at 290.083 kb on - strand at 290.115 kb on - strand at 290.116 kb on + strand at 290.117 kb on - strand at 290.123 kb on - strand at 290.136 kb on - strand at 290.196 kb on + strand at 290.197 kb on - strand at 290.292 kb on + strand, within HMPREF1058_RS07200 at 290.365 kb on + strand, within HMPREF1058_RS07200 at 290.365 kb on + strand, within HMPREF1058_RS07200 at 290.365 kb on + strand, within HMPREF1058_RS07200 at 290.366 kb on - strand, within HMPREF1058_RS07200 at 290.411 kb on + strand, within HMPREF1058_RS07200 at 290.467 kb on + strand, within HMPREF1058_RS07200 at 290.468 kb on - strand, within HMPREF1058_RS07200 at 290.474 kb on + strand, within HMPREF1058_RS07200 at 290.475 kb on - strand, within HMPREF1058_RS07200 at 290.475 kb on - strand, within HMPREF1058_RS07200 at 290.475 kb on - strand, within HMPREF1058_RS07200 at 290.479 kb on - strand, within HMPREF1058_RS07200 at 290.595 kb on - strand, within HMPREF1058_RS07200 at 290.723 kb on - strand, within HMPREF1058_RS07200 at 290.863 kb on - strand, within HMPREF1058_RS07200 at 290.908 kb on + strand, within HMPREF1058_RS07200 at 290.908 kb on + strand, within HMPREF1058_RS07200
Per-strain Table
Position Strand Gene LocusTag Fraction D-Mannose 10 mM (C) remove 287,939 + +1.3 287,940 - -0.7 287,977 + +1.6 288,120 + HMPREF1058_RS07210 0.17 -0.8 288,120 + HMPREF1058_RS07210 0.17 +0.7 288,120 + HMPREF1058_RS07210 0.17 -0.1 288,120 + HMPREF1058_RS07210 0.17 -0.1 288,121 - HMPREF1058_RS07210 0.17 -0.3 288,151 + HMPREF1058_RS07210 0.21 +1.4 288,185 + HMPREF1058_RS07210 0.26 -0.2 288,242 + HMPREF1058_RS07210 0.34 +0.3 288,243 - HMPREF1058_RS07210 0.34 -0.4 288,273 - HMPREF1058_RS07210 0.39 -1.6 288,291 - HMPREF1058_RS07210 0.41 -2.2 288,388 + HMPREF1058_RS07210 0.56 -0.6 288,391 - HMPREF1058_RS07210 0.56 -2.1 288,694 + -0.8 288,694 + +0.6 288,695 - -1.3 288,695 - -0.7 288,696 + +0.4 288,697 - +0.0 288,708 + +1.0 288,711 + -0.5 288,715 - -2.0 288,767 + +2.1 288,874 - +0.6 288,887 + -0.6 288,940 - -2.3 289,005 - HMPREF1058_RS07205 0.11 -2.6 289,181 - HMPREF1058_RS07205 0.28 -3.5 289,192 - HMPREF1058_RS07205 0.29 -3.6 289,215 - HMPREF1058_RS07205 0.31 -3.0 289,267 - HMPREF1058_RS07205 0.36 -3.5 289,346 - HMPREF1058_RS07205 0.44 -1.5 289,479 + HMPREF1058_RS07205 0.56 -4.5 289,484 + HMPREF1058_RS07205 0.57 -3.0 289,485 - HMPREF1058_RS07205 0.57 -3.3 289,516 - HMPREF1058_RS07205 0.60 -1.9 289,642 + -2.1 289,643 - HMPREF1058_RS07205 0.72 -1.5 289,699 + HMPREF1058_RS07205 0.77 -3.5 289,897 + -2.0 289,897 + -2.3 289,949 + -1.1 289,973 + -1.5 289,974 - -3.5 289,974 - -1.2 289,983 + -1.2 290,034 + -1.3 290,035 - -0.1 290,083 - -2.7 290,115 - +1.4 290,116 + -1.5 290,117 - -1.4 290,123 - -0.6 290,136 - -0.5 290,196 + +1.0 290,197 - -0.4 290,292 + HMPREF1058_RS07200 0.10 -3.7 290,365 + HMPREF1058_RS07200 0.20 -3.8 290,365 + HMPREF1058_RS07200 0.20 -1.8 290,365 + HMPREF1058_RS07200 0.20 -2.0 290,366 - HMPREF1058_RS07200 0.20 -4.1 290,411 + HMPREF1058_RS07200 0.26 -3.8 290,467 + HMPREF1058_RS07200 0.33 -2.4 290,468 - HMPREF1058_RS07200 0.33 -4.0 290,474 + HMPREF1058_RS07200 0.34 -4.3 290,475 - HMPREF1058_RS07200 0.34 -4.5 290,475 - HMPREF1058_RS07200 0.34 -5.0 290,475 - HMPREF1058_RS07200 0.34 -3.4 290,479 - HMPREF1058_RS07200 0.34 -4.2 290,595 - HMPREF1058_RS07200 0.49 -5.7 290,723 - HMPREF1058_RS07200 0.66 -3.6 290,863 - HMPREF1058_RS07200 0.84 -5.3 290,908 + HMPREF1058_RS07200 0.90 -4.2 290,908 + HMPREF1058_RS07200 0.90 -3.1
Or see this region's nucleotide sequence