Experiment: D-Mannose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS07205 and HMPREF1058_RS07200 are separated by 277 nucleotides HMPREF1058_RS07200 and HMPREF1058_RS07195 overlap by 4 nucleotides HMPREF1058_RS07195 and HMPREF1058_RS07190 are separated by 12 nucleotides
HMPREF1058_RS07205: HMPREF1058_RS07205 - type I asparaginase, at 288,891 to 289,934
_RS07205
HMPREF1058_RS07200: HMPREF1058_RS07200 - tryptophan synthase subunit alpha, at 290,212 to 290,988
_RS07200
HMPREF1058_RS07195: HMPREF1058_RS07195 - phosphoribosylanthranilate isomerase, at 290,985 to 291,602
_RS07195
HMPREF1058_RS07190: HMPREF1058_RS07190 - indole-3-glycerol phosphate synthase TrpC, at 291,615 to 292,403
_RS07190
Position (kb) 290
291 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1 at 289.215 kb on - strand, within HMPREF1058_RS07205 at 289.267 kb on - strand, within HMPREF1058_RS07205 at 289.346 kb on - strand, within HMPREF1058_RS07205 at 289.479 kb on + strand, within HMPREF1058_RS07205 at 289.484 kb on + strand, within HMPREF1058_RS07205 at 289.485 kb on - strand, within HMPREF1058_RS07205 at 289.516 kb on - strand, within HMPREF1058_RS07205 at 289.642 kb on + strand at 289.643 kb on - strand, within HMPREF1058_RS07205 at 289.699 kb on + strand, within HMPREF1058_RS07205 at 289.897 kb on + strand at 289.897 kb on + strand at 289.949 kb on + strand at 289.973 kb on + strand at 289.974 kb on - strand at 289.974 kb on - strand at 289.983 kb on + strand at 290.034 kb on + strand at 290.035 kb on - strand at 290.083 kb on - strand at 290.115 kb on - strand at 290.116 kb on + strand at 290.117 kb on - strand at 290.123 kb on - strand at 290.136 kb on - strand at 290.196 kb on + strand at 290.197 kb on - strand at 290.292 kb on + strand, within HMPREF1058_RS07200 at 290.365 kb on + strand, within HMPREF1058_RS07200 at 290.365 kb on + strand, within HMPREF1058_RS07200 at 290.365 kb on + strand, within HMPREF1058_RS07200 at 290.366 kb on - strand, within HMPREF1058_RS07200 at 290.411 kb on + strand, within HMPREF1058_RS07200 at 290.467 kb on + strand, within HMPREF1058_RS07200 at 290.468 kb on - strand, within HMPREF1058_RS07200 at 290.474 kb on + strand, within HMPREF1058_RS07200 at 290.475 kb on - strand, within HMPREF1058_RS07200 at 290.475 kb on - strand, within HMPREF1058_RS07200 at 290.475 kb on - strand, within HMPREF1058_RS07200 at 290.479 kb on - strand, within HMPREF1058_RS07200 at 290.595 kb on - strand, within HMPREF1058_RS07200 at 290.723 kb on - strand, within HMPREF1058_RS07200 at 290.863 kb on - strand, within HMPREF1058_RS07200 at 290.908 kb on + strand, within HMPREF1058_RS07200 at 290.908 kb on + strand, within HMPREF1058_RS07200 at 291.015 kb on - strand at 291.173 kb on - strand, within HMPREF1058_RS07195 at 291.248 kb on - strand, within HMPREF1058_RS07195 at 291.257 kb on + strand, within HMPREF1058_RS07195 at 291.340 kb on - strand, within HMPREF1058_RS07195 at 291.384 kb on - strand, within HMPREF1058_RS07195 at 291.496 kb on + strand, within HMPREF1058_RS07195 at 291.589 kb on - strand at 291.638 kb on + strand at 291.877 kb on - strand, within HMPREF1058_RS07190 at 291.877 kb on - strand, within HMPREF1058_RS07190 at 291.879 kb on - strand, within HMPREF1058_RS07190 at 291.879 kb on - strand, within HMPREF1058_RS07190 at 291.879 kb on - strand, within HMPREF1058_RS07190 at 291.880 kb on + strand, within HMPREF1058_RS07190 at 291.881 kb on - strand, within HMPREF1058_RS07190
Per-strain Table
Position Strand Gene LocusTag Fraction D-Mannose 10 mM (C) remove 289,215 - HMPREF1058_RS07205 0.31 -3.0 289,267 - HMPREF1058_RS07205 0.36 -3.5 289,346 - HMPREF1058_RS07205 0.44 -1.5 289,479 + HMPREF1058_RS07205 0.56 -4.5 289,484 + HMPREF1058_RS07205 0.57 -3.0 289,485 - HMPREF1058_RS07205 0.57 -3.3 289,516 - HMPREF1058_RS07205 0.60 -1.9 289,642 + -2.1 289,643 - HMPREF1058_RS07205 0.72 -1.5 289,699 + HMPREF1058_RS07205 0.77 -3.5 289,897 + -2.0 289,897 + -2.3 289,949 + -1.1 289,973 + -1.5 289,974 - -3.5 289,974 - -1.2 289,983 + -1.2 290,034 + -1.3 290,035 - -0.1 290,083 - -2.7 290,115 - +1.4 290,116 + -1.5 290,117 - -1.4 290,123 - -0.6 290,136 - -0.5 290,196 + +1.0 290,197 - -0.4 290,292 + HMPREF1058_RS07200 0.10 -3.7 290,365 + HMPREF1058_RS07200 0.20 -3.8 290,365 + HMPREF1058_RS07200 0.20 -1.8 290,365 + HMPREF1058_RS07200 0.20 -2.0 290,366 - HMPREF1058_RS07200 0.20 -4.1 290,411 + HMPREF1058_RS07200 0.26 -3.8 290,467 + HMPREF1058_RS07200 0.33 -2.4 290,468 - HMPREF1058_RS07200 0.33 -4.0 290,474 + HMPREF1058_RS07200 0.34 -4.3 290,475 - HMPREF1058_RS07200 0.34 -4.5 290,475 - HMPREF1058_RS07200 0.34 -5.0 290,475 - HMPREF1058_RS07200 0.34 -3.4 290,479 - HMPREF1058_RS07200 0.34 -4.2 290,595 - HMPREF1058_RS07200 0.49 -5.7 290,723 - HMPREF1058_RS07200 0.66 -3.6 290,863 - HMPREF1058_RS07200 0.84 -5.3 290,908 + HMPREF1058_RS07200 0.90 -4.2 290,908 + HMPREF1058_RS07200 0.90 -3.1 291,015 - -2.1 291,173 - HMPREF1058_RS07195 0.30 -4.7 291,248 - HMPREF1058_RS07195 0.43 -3.6 291,257 + HMPREF1058_RS07195 0.44 -4.2 291,340 - HMPREF1058_RS07195 0.57 -3.6 291,384 - HMPREF1058_RS07195 0.65 -2.3 291,496 + HMPREF1058_RS07195 0.83 -0.8 291,589 - -3.8 291,638 + -3.1 291,877 - HMPREF1058_RS07190 0.33 -0.5 291,877 - HMPREF1058_RS07190 0.33 -3.9 291,879 - HMPREF1058_RS07190 0.33 -6.1 291,879 - HMPREF1058_RS07190 0.33 -2.4 291,879 - HMPREF1058_RS07190 0.33 -4.1 291,880 + HMPREF1058_RS07190 0.34 -3.3 291,881 - HMPREF1058_RS07190 0.34 -4.2
Or see this region's nucleotide sequence