Experiment: D-Mannose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS05040 and HMPREF1058_RS05035 are separated by 313 nucleotides HMPREF1058_RS05035 and HMPREF1058_RS05030 are separated by 42 nucleotides
HMPREF1058_RS05040: HMPREF1058_RS05040 - phospho-sugar mutase, at 260,586 to 262,331
_RS05040
HMPREF1058_RS05035: HMPREF1058_RS05035 - C69 family dipeptidase, at 262,645 to 264,285
_RS05035
HMPREF1058_RS05030: HMPREF1058_RS05030 - M23 family metallopeptidase, at 264,328 to 265,998
_RS05030
Position (kb) 262
263
264
265 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 262.358 kb on - strand at 262.460 kb on - strand at 262.570 kb on - strand at 262.570 kb on - strand at 262.570 kb on - strand at 262.631 kb on + strand at 262.647 kb on - strand at 262.647 kb on - strand at 262.656 kb on + strand at 262.753 kb on + strand at 262.754 kb on - strand at 262.754 kb on - strand at 262.796 kb on + strand at 262.863 kb on + strand, within HMPREF1058_RS05035 at 262.863 kb on + strand, within HMPREF1058_RS05035 at 262.865 kb on + strand, within HMPREF1058_RS05035 at 262.865 kb on + strand, within HMPREF1058_RS05035 at 262.909 kb on + strand, within HMPREF1058_RS05035 at 262.909 kb on + strand, within HMPREF1058_RS05035 at 262.910 kb on - strand, within HMPREF1058_RS05035 at 262.952 kb on + strand, within HMPREF1058_RS05035 at 262.957 kb on - strand, within HMPREF1058_RS05035 at 262.986 kb on + strand, within HMPREF1058_RS05035 at 263.007 kb on - strand, within HMPREF1058_RS05035 at 263.097 kb on - strand, within HMPREF1058_RS05035 at 263.126 kb on + strand, within HMPREF1058_RS05035 at 263.126 kb on + strand, within HMPREF1058_RS05035 at 263.128 kb on + strand, within HMPREF1058_RS05035 at 263.148 kb on + strand, within HMPREF1058_RS05035 at 263.148 kb on + strand, within HMPREF1058_RS05035 at 263.176 kb on + strand, within HMPREF1058_RS05035 at 263.176 kb on + strand, within HMPREF1058_RS05035 at 263.177 kb on - strand, within HMPREF1058_RS05035 at 263.268 kb on - strand, within HMPREF1058_RS05035 at 263.348 kb on - strand, within HMPREF1058_RS05035 at 263.348 kb on - strand, within HMPREF1058_RS05035 at 263.430 kb on - strand, within HMPREF1058_RS05035 at 263.465 kb on + strand, within HMPREF1058_RS05035 at 263.474 kb on + strand, within HMPREF1058_RS05035 at 263.479 kb on - strand, within HMPREF1058_RS05035 at 263.507 kb on + strand, within HMPREF1058_RS05035 at 263.508 kb on - strand, within HMPREF1058_RS05035 at 263.539 kb on + strand, within HMPREF1058_RS05035 at 263.562 kb on + strand, within HMPREF1058_RS05035 at 263.698 kb on - strand, within HMPREF1058_RS05035 at 263.712 kb on + strand, within HMPREF1058_RS05035 at 263.728 kb on - strand, within HMPREF1058_RS05035 at 263.728 kb on - strand, within HMPREF1058_RS05035 at 263.744 kb on - strand, within HMPREF1058_RS05035 at 263.832 kb on + strand, within HMPREF1058_RS05035 at 263.835 kb on - strand, within HMPREF1058_RS05035 at 263.838 kb on - strand, within HMPREF1058_RS05035 at 263.912 kb on + strand, within HMPREF1058_RS05035 at 264.012 kb on + strand, within HMPREF1058_RS05035 at 264.012 kb on + strand, within HMPREF1058_RS05035 at 264.013 kb on - strand, within HMPREF1058_RS05035 at 264.024 kb on + strand, within HMPREF1058_RS05035 at 264.027 kb on - strand, within HMPREF1058_RS05035 at 264.080 kb on + strand, within HMPREF1058_RS05035 at 264.080 kb on + strand, within HMPREF1058_RS05035 at 264.080 kb on + strand, within HMPREF1058_RS05035 at 264.080 kb on + strand, within HMPREF1058_RS05035 at 264.081 kb on - strand, within HMPREF1058_RS05035 at 264.081 kb on - strand, within HMPREF1058_RS05035 at 264.167 kb on - strand at 264.206 kb on - strand at 264.277 kb on - strand at 264.289 kb on + strand at 264.290 kb on - strand at 264.291 kb on + strand at 264.294 kb on - strand at 264.310 kb on - strand at 264.318 kb on + strand at 264.323 kb on + strand at 264.365 kb on - strand at 264.492 kb on + strand at 264.493 kb on - strand at 264.540 kb on + strand, within HMPREF1058_RS05030 at 264.561 kb on + strand, within HMPREF1058_RS05030 at 264.595 kb on + strand, within HMPREF1058_RS05030 at 264.595 kb on + strand, within HMPREF1058_RS05030 at 264.596 kb on - strand, within HMPREF1058_RS05030 at 264.596 kb on - strand, within HMPREF1058_RS05030 at 264.597 kb on + strand, within HMPREF1058_RS05030 at 264.598 kb on - strand, within HMPREF1058_RS05030 at 264.601 kb on + strand, within HMPREF1058_RS05030 at 264.608 kb on + strand, within HMPREF1058_RS05030 at 264.715 kb on - strand, within HMPREF1058_RS05030 at 264.817 kb on - strand, within HMPREF1058_RS05030 at 264.855 kb on - strand, within HMPREF1058_RS05030 at 265.000 kb on - strand, within HMPREF1058_RS05030 at 265.137 kb on + strand, within HMPREF1058_RS05030 at 265.138 kb on - strand, within HMPREF1058_RS05030 at 265.244 kb on + strand, within HMPREF1058_RS05030 at 265.245 kb on - strand, within HMPREF1058_RS05030 at 265.245 kb on - strand, within HMPREF1058_RS05030 at 265.245 kb on - strand, within HMPREF1058_RS05030 at 265.268 kb on + strand, within HMPREF1058_RS05030
Per-strain Table
Position Strand Gene LocusTag Fraction D-Mannose 10 mM (C) remove 262,358 - -1.5 262,460 - -0.4 262,570 - -2.4 262,570 - -0.3 262,570 - +0.1 262,631 + -1.1 262,647 - +1.2 262,647 - -3.7 262,656 + -0.8 262,753 + -1.6 262,754 - -2.5 262,754 - -1.3 262,796 + -1.8 262,863 + HMPREF1058_RS05035 0.13 -1.2 262,863 + HMPREF1058_RS05035 0.13 -0.7 262,865 + HMPREF1058_RS05035 0.13 -0.4 262,865 + HMPREF1058_RS05035 0.13 -3.9 262,909 + HMPREF1058_RS05035 0.16 -1.8 262,909 + HMPREF1058_RS05035 0.16 +1.6 262,910 - HMPREF1058_RS05035 0.16 -2.2 262,952 + HMPREF1058_RS05035 0.19 -1.5 262,957 - HMPREF1058_RS05035 0.19 -2.5 262,986 + HMPREF1058_RS05035 0.21 -3.6 263,007 - HMPREF1058_RS05035 0.22 -2.6 263,097 - HMPREF1058_RS05035 0.28 -0.8 263,126 + HMPREF1058_RS05035 0.29 -1.0 263,126 + HMPREF1058_RS05035 0.29 -3.6 263,128 + HMPREF1058_RS05035 0.29 -0.4 263,148 + HMPREF1058_RS05035 0.31 -1.2 263,148 + HMPREF1058_RS05035 0.31 -0.6 263,176 + HMPREF1058_RS05035 0.32 -2.0 263,176 + HMPREF1058_RS05035 0.32 -0.4 263,177 - HMPREF1058_RS05035 0.32 -2.4 263,268 - HMPREF1058_RS05035 0.38 -3.3 263,348 - HMPREF1058_RS05035 0.43 -4.4 263,348 - HMPREF1058_RS05035 0.43 -2.2 263,430 - HMPREF1058_RS05035 0.48 -0.7 263,465 + HMPREF1058_RS05035 0.50 -1.5 263,474 + HMPREF1058_RS05035 0.51 -2.6 263,479 - HMPREF1058_RS05035 0.51 -0.6 263,507 + HMPREF1058_RS05035 0.53 -1.2 263,508 - HMPREF1058_RS05035 0.53 -3.0 263,539 + HMPREF1058_RS05035 0.54 -1.5 263,562 + HMPREF1058_RS05035 0.56 -3.2 263,698 - HMPREF1058_RS05035 0.64 -2.9 263,712 + HMPREF1058_RS05035 0.65 +0.1 263,728 - HMPREF1058_RS05035 0.66 -1.6 263,728 - HMPREF1058_RS05035 0.66 -2.0 263,744 - HMPREF1058_RS05035 0.67 -4.3 263,832 + HMPREF1058_RS05035 0.72 -0.7 263,835 - HMPREF1058_RS05035 0.73 -2.2 263,838 - HMPREF1058_RS05035 0.73 -2.4 263,912 + HMPREF1058_RS05035 0.77 -0.7 264,012 + HMPREF1058_RS05035 0.83 -0.7 264,012 + HMPREF1058_RS05035 0.83 -0.7 264,013 - HMPREF1058_RS05035 0.83 -3.4 264,024 + HMPREF1058_RS05035 0.84 -0.5 264,027 - HMPREF1058_RS05035 0.84 -1.6 264,080 + HMPREF1058_RS05035 0.87 -1.7 264,080 + HMPREF1058_RS05035 0.87 +1.6 264,080 + HMPREF1058_RS05035 0.87 -1.9 264,080 + HMPREF1058_RS05035 0.87 -0.7 264,081 - HMPREF1058_RS05035 0.88 -1.2 264,081 - HMPREF1058_RS05035 0.88 -0.7 264,167 - -1.9 264,206 - -2.9 264,277 - -3.5 264,289 + -1.6 264,290 - -1.4 264,291 + -0.5 264,294 - +0.6 264,310 - +0.6 264,318 + -1.1 264,323 + -0.6 264,365 - +1.8 264,492 + +0.0 264,493 - +0.4 264,540 + HMPREF1058_RS05030 0.13 -2.0 264,561 + HMPREF1058_RS05030 0.14 -0.7 264,595 + HMPREF1058_RS05030 0.16 -1.4 264,595 + HMPREF1058_RS05030 0.16 -1.6 264,596 - HMPREF1058_RS05030 0.16 -2.2 264,596 - HMPREF1058_RS05030 0.16 -0.5 264,597 + HMPREF1058_RS05030 0.16 -2.4 264,598 - HMPREF1058_RS05030 0.16 -0.5 264,601 + HMPREF1058_RS05030 0.16 -0.6 264,608 + HMPREF1058_RS05030 0.17 -2.5 264,715 - HMPREF1058_RS05030 0.23 +0.1 264,817 - HMPREF1058_RS05030 0.29 -1.3 264,855 - HMPREF1058_RS05030 0.32 +0.8 265,000 - HMPREF1058_RS05030 0.40 -0.7 265,137 + HMPREF1058_RS05030 0.48 -2.7 265,138 - HMPREF1058_RS05030 0.48 +0.2 265,244 + HMPREF1058_RS05030 0.55 -1.2 265,245 - HMPREF1058_RS05030 0.55 -1.0 265,245 - HMPREF1058_RS05030 0.55 +1.6 265,245 - HMPREF1058_RS05030 0.55 +1.2 265,268 + HMPREF1058_RS05030 0.56 -0.7
Or see this region's nucleotide sequence