Experiment: D-Mannose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS02995 and HMPREF1058_RS02990 are separated by 36 nucleotides HMPREF1058_RS02990 and HMPREF1058_RS02985 are separated by 4 nucleotides
HMPREF1058_RS02995: HMPREF1058_RS02995 - peptidylprolyl isomerase, at 36,052 to 37,389
_RS02995
HMPREF1058_RS02990: HMPREF1058_RS02990 - peptidyl-prolyl cis-trans isomerase, at 37,426 to 38,298
_RS02990
HMPREF1058_RS02985: HMPREF1058_RS02985 - peptidylprolyl isomerase, at 38,303 to 39,661
_RS02985
Position (kb) 37
38
39 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 36.439 kb on + strand, within HMPREF1058_RS02995 at 36.503 kb on - strand, within HMPREF1058_RS02995 at 36.684 kb on + strand, within HMPREF1058_RS02995 at 36.697 kb on - strand, within HMPREF1058_RS02995 at 36.697 kb on - strand, within HMPREF1058_RS02995 at 36.697 kb on - strand, within HMPREF1058_RS02995 at 36.786 kb on + strand, within HMPREF1058_RS02995 at 36.786 kb on + strand, within HMPREF1058_RS02995 at 36.787 kb on - strand, within HMPREF1058_RS02995 at 36.953 kb on - strand, within HMPREF1058_RS02995 at 36.953 kb on - strand, within HMPREF1058_RS02995 at 37.070 kb on + strand, within HMPREF1058_RS02995 at 37.071 kb on - strand, within HMPREF1058_RS02995 at 37.075 kb on - strand, within HMPREF1058_RS02995 at 37.075 kb on - strand, within HMPREF1058_RS02995 at 37.147 kb on + strand, within HMPREF1058_RS02995 at 37.149 kb on + strand, within HMPREF1058_RS02995 at 37.200 kb on - strand, within HMPREF1058_RS02995 at 37.330 kb on + strand at 37.332 kb on + strand at 37.371 kb on + strand at 37.391 kb on + strand at 37.425 kb on + strand at 37.463 kb on + strand at 37.540 kb on + strand, within HMPREF1058_RS02990 at 37.540 kb on + strand, within HMPREF1058_RS02990 at 37.546 kb on + strand, within HMPREF1058_RS02990 at 37.548 kb on + strand, within HMPREF1058_RS02990 at 37.618 kb on + strand, within HMPREF1058_RS02990 at 37.734 kb on + strand, within HMPREF1058_RS02990 at 37.734 kb on + strand, within HMPREF1058_RS02990 at 37.778 kb on + strand, within HMPREF1058_RS02990 at 37.830 kb on + strand, within HMPREF1058_RS02990 at 37.932 kb on + strand, within HMPREF1058_RS02990 at 37.981 kb on + strand, within HMPREF1058_RS02990 at 38.087 kb on + strand, within HMPREF1058_RS02990 at 38.220 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Mannose 10 mM (C) remove 36,439 + HMPREF1058_RS02995 0.29 -0.0 36,503 - HMPREF1058_RS02995 0.34 -0.5 36,684 + HMPREF1058_RS02995 0.47 +0.3 36,697 - HMPREF1058_RS02995 0.48 +1.0 36,697 - HMPREF1058_RS02995 0.48 +0.1 36,697 - HMPREF1058_RS02995 0.48 -0.6 36,786 + HMPREF1058_RS02995 0.55 -0.1 36,786 + HMPREF1058_RS02995 0.55 -0.3 36,787 - HMPREF1058_RS02995 0.55 -2.0 36,953 - HMPREF1058_RS02995 0.67 -0.5 36,953 - HMPREF1058_RS02995 0.67 -1.0 37,070 + HMPREF1058_RS02995 0.76 -0.1 37,071 - HMPREF1058_RS02995 0.76 -1.1 37,075 - HMPREF1058_RS02995 0.76 -1.4 37,075 - HMPREF1058_RS02995 0.76 -0.5 37,147 + HMPREF1058_RS02995 0.82 +0.5 37,149 + HMPREF1058_RS02995 0.82 -0.8 37,200 - HMPREF1058_RS02995 0.86 -0.7 37,330 + -0.7 37,332 + +0.9 37,371 + -0.2 37,391 + +1.9 37,425 + -2.7 37,463 + -3.0 37,540 + HMPREF1058_RS02990 0.13 -0.7 37,540 + HMPREF1058_RS02990 0.13 -4.2 37,546 + HMPREF1058_RS02990 0.14 -2.6 37,548 + HMPREF1058_RS02990 0.14 -3.6 37,618 + HMPREF1058_RS02990 0.22 -4.2 37,734 + HMPREF1058_RS02990 0.35 -0.9 37,734 + HMPREF1058_RS02990 0.35 -1.0 37,778 + HMPREF1058_RS02990 0.40 -2.4 37,830 + HMPREF1058_RS02990 0.46 -2.1 37,932 + HMPREF1058_RS02990 0.58 +0.9 37,981 + HMPREF1058_RS02990 0.64 -2.0 38,087 + HMPREF1058_RS02990 0.76 -0.9 38,220 + -0.8
Or see this region's nucleotide sequence