Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS02930

Experiment: D-Mannose 10 mM (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHMPREF1058_RS02935 and HMPREF1058_RS02930 are separated by 77 nucleotidesHMPREF1058_RS02930 and HMPREF1058_RS02925 are separated by 106 nucleotidesHMPREF1058_RS02925 and HMPREF1058_RS02920 are separated by 87 nucleotides HMPREF1058_RS02935: HMPREF1058_RS02935 - sulfotransferase, at 50,454 to 51,560 _RS02935 HMPREF1058_RS02930: HMPREF1058_RS02930 - OmpA family protein, at 51,638 to 52,837 _RS02930 HMPREF1058_RS02925: HMPREF1058_RS02925 - peroxide stress protein YaaA, at 52,944 to 53,711 _RS02925 HMPREF1058_RS02920: HMPREF1058_RS02920 - TlpA family protein disulfide reductase, at 53,799 to 54,299 _RS02920 Position (kb) 51 52 53Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 50.717 kb on + strand, within HMPREF1058_RS02935at 50.718 kb on - strand, within HMPREF1058_RS02935at 50.750 kb on + strand, within HMPREF1058_RS02935at 50.751 kb on - strand, within HMPREF1058_RS02935at 50.756 kb on + strand, within HMPREF1058_RS02935at 50.761 kb on - strand, within HMPREF1058_RS02935at 50.907 kb on - strand, within HMPREF1058_RS02935at 50.917 kb on - strand, within HMPREF1058_RS02935at 50.918 kb on + strand, within HMPREF1058_RS02935at 50.918 kb on + strand, within HMPREF1058_RS02935at 50.922 kb on + strand, within HMPREF1058_RS02935at 50.922 kb on + strand, within HMPREF1058_RS02935at 50.923 kb on - strand, within HMPREF1058_RS02935at 51.023 kb on + strand, within HMPREF1058_RS02935at 51.084 kb on - strand, within HMPREF1058_RS02935at 51.168 kb on + strand, within HMPREF1058_RS02935at 51.186 kb on - strand, within HMPREF1058_RS02935at 51.206 kb on + strand, within HMPREF1058_RS02935at 51.291 kb on - strand, within HMPREF1058_RS02935at 51.294 kb on + strand, within HMPREF1058_RS02935at 51.386 kb on + strand, within HMPREF1058_RS02935at 51.386 kb on + strand, within HMPREF1058_RS02935at 51.390 kb on + strand, within HMPREF1058_RS02935at 51.391 kb on - strand, within HMPREF1058_RS02935at 51.393 kb on - strand, within HMPREF1058_RS02935at 51.444 kb on + strand, within HMPREF1058_RS02935at 51.445 kb on - strand, within HMPREF1058_RS02935at 51.446 kb on + strand, within HMPREF1058_RS02935at 51.446 kb on + strand, within HMPREF1058_RS02935at 51.449 kb on - strand, within HMPREF1058_RS02935at 51.465 kb on + strandat 51.467 kb on + strandat 51.468 kb on - strandat 51.477 kb on - strandat 51.477 kb on - strandat 51.483 kb on - strandat 51.483 kb on - strandat 51.483 kb on - strandat 51.486 kb on + strandat 51.487 kb on - strandat 51.610 kb on - strandat 51.634 kb on + strandat 51.635 kb on - strandat 51.635 kb on - strandat 51.635 kb on - strandat 51.743 kb on - strandat 51.895 kb on + strand, within HMPREF1058_RS02930at 51.936 kb on - strand, within HMPREF1058_RS02930at 52.038 kb on - strand, within HMPREF1058_RS02930at 52.085 kb on - strand, within HMPREF1058_RS02930at 52.085 kb on - strand, within HMPREF1058_RS02930at 52.096 kb on + strand, within HMPREF1058_RS02930at 52.097 kb on - strand, within HMPREF1058_RS02930at 52.160 kb on - strand, within HMPREF1058_RS02930at 52.273 kb on + strand, within HMPREF1058_RS02930at 52.323 kb on + strand, within HMPREF1058_RS02930at 52.323 kb on + strand, within HMPREF1058_RS02930at 52.324 kb on - strand, within HMPREF1058_RS02930at 52.366 kb on - strand, within HMPREF1058_RS02930at 52.381 kb on + strand, within HMPREF1058_RS02930at 52.437 kb on + strand, within HMPREF1058_RS02930at 52.545 kb on - strand, within HMPREF1058_RS02930at 52.551 kb on - strand, within HMPREF1058_RS02930at 52.600 kb on + strand, within HMPREF1058_RS02930at 52.644 kb on - strandat 52.707 kb on + strand, within HMPREF1058_RS02930at 52.707 kb on + strand, within HMPREF1058_RS02930at 52.708 kb on - strand, within HMPREF1058_RS02930at 52.708 kb on - strand, within HMPREF1058_RS02930at 52.730 kb on + strandat 52.736 kb on + strandat 52.736 kb on + strandat 52.737 kb on - strandat 52.737 kb on - strandat 52.737 kb on - strandat 52.800 kb on - strandat 52.847 kb on + strandat 52.851 kb on - strandat 52.854 kb on + strandat 52.855 kb on - strandat 52.871 kb on + strandat 53.131 kb on - strand, within HMPREF1058_RS02925at 53.157 kb on + strand, within HMPREF1058_RS02925at 53.158 kb on - strand, within HMPREF1058_RS02925at 53.220 kb on + strand, within HMPREF1058_RS02925at 53.223 kb on + strand, within HMPREF1058_RS02925at 53.224 kb on - strand, within HMPREF1058_RS02925at 53.321 kb on + strand, within HMPREF1058_RS02925at 53.455 kb on + strand, within HMPREF1058_RS02925at 53.457 kb on + strand, within HMPREF1058_RS02925at 53.457 kb on + strand, within HMPREF1058_RS02925at 53.458 kb on - strand, within HMPREF1058_RS02925at 53.458 kb on - strand, within HMPREF1058_RS02925at 53.460 kb on + strand, within HMPREF1058_RS02925at 53.460 kb on + strand, within HMPREF1058_RS02925at 53.460 kb on + strand, within HMPREF1058_RS02925at 53.471 kb on - strand, within HMPREF1058_RS02925at 53.528 kb on + strand, within HMPREF1058_RS02925at 53.531 kb on - strand, within HMPREF1058_RS02925at 53.600 kb on + strand, within HMPREF1058_RS02925at 53.600 kb on + strand, within HMPREF1058_RS02925at 53.601 kb on - strand, within HMPREF1058_RS02925at 53.601 kb on - strand, within HMPREF1058_RS02925at 53.760 kb on + strandat 53.760 kb on + strandat 53.760 kb on + strandat 53.761 kb on - strandat 53.784 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Mannose 10 mM (C)
remove
50,717 + HMPREF1058_RS02935 0.24 +0.2
50,718 - HMPREF1058_RS02935 0.24 +0.6
50,750 + HMPREF1058_RS02935 0.27 -0.3
50,751 - HMPREF1058_RS02935 0.27 -0.8
50,756 + HMPREF1058_RS02935 0.27 -0.8
50,761 - HMPREF1058_RS02935 0.28 +0.2
50,907 - HMPREF1058_RS02935 0.41 -0.8
50,917 - HMPREF1058_RS02935 0.42 +0.4
50,918 + HMPREF1058_RS02935 0.42 -1.2
50,918 + HMPREF1058_RS02935 0.42 -1.1
50,922 + HMPREF1058_RS02935 0.42 -1.1
50,922 + HMPREF1058_RS02935 0.42 -0.0
50,923 - HMPREF1058_RS02935 0.42 -0.4
51,023 + HMPREF1058_RS02935 0.51 -0.2
51,084 - HMPREF1058_RS02935 0.57 -1.0
51,168 + HMPREF1058_RS02935 0.64 -0.4
51,186 - HMPREF1058_RS02935 0.66 +0.1
51,206 + HMPREF1058_RS02935 0.68 -0.0
51,291 - HMPREF1058_RS02935 0.76 -0.7
51,294 + HMPREF1058_RS02935 0.76 +0.5
51,386 + HMPREF1058_RS02935 0.84 -0.2
51,386 + HMPREF1058_RS02935 0.84 -0.7
51,390 + HMPREF1058_RS02935 0.85 -0.5
51,391 - HMPREF1058_RS02935 0.85 -0.1
51,393 - HMPREF1058_RS02935 0.85 +0.8
51,444 + HMPREF1058_RS02935 0.89 -1.1
51,445 - HMPREF1058_RS02935 0.90 +0.9
51,446 + HMPREF1058_RS02935 0.90 -1.0
51,446 + HMPREF1058_RS02935 0.90 -0.4
51,449 - HMPREF1058_RS02935 0.90 -1.3
51,465 + -2.5
51,467 + -1.6
51,468 - -0.3
51,477 - -0.6
51,477 - -0.1
51,483 - -0.3
51,483 - -0.7
51,483 - +1.0
51,486 + +0.0
51,487 - -0.6
51,610 - -1.3
51,634 + +0.7
51,635 - -0.9
51,635 - -2.2
51,635 - -0.7
51,743 - -2.1
51,895 + HMPREF1058_RS02930 0.21 -0.5
51,936 - HMPREF1058_RS02930 0.25 -4.4
52,038 - HMPREF1058_RS02930 0.33 -0.8
52,085 - HMPREF1058_RS02930 0.37 -1.9
52,085 - HMPREF1058_RS02930 0.37 -1.0
52,096 + HMPREF1058_RS02930 0.38 -0.2
52,097 - HMPREF1058_RS02930 0.38 -2.3
52,160 - HMPREF1058_RS02930 0.43 -1.8
52,273 + HMPREF1058_RS02930 0.53 -0.9
52,323 + HMPREF1058_RS02930 0.57 -1.0
52,323 + HMPREF1058_RS02930 0.57 -2.5
52,324 - HMPREF1058_RS02930 0.57 -1.1
52,366 - HMPREF1058_RS02930 0.61 -2.2
52,381 + HMPREF1058_RS02930 0.62 -2.5
52,437 + HMPREF1058_RS02930 0.67 -1.8
52,545 - HMPREF1058_RS02930 0.76 -0.7
52,551 - HMPREF1058_RS02930 0.76 -1.1
52,600 + HMPREF1058_RS02930 0.80 -1.0
52,644 - -0.9
52,707 + HMPREF1058_RS02930 0.89 -1.9
52,707 + HMPREF1058_RS02930 0.89 -1.0
52,708 - HMPREF1058_RS02930 0.89 +0.9
52,708 - HMPREF1058_RS02930 0.89 +0.3
52,730 + -0.2
52,736 + +1.0
52,736 + +0.6
52,737 - -2.5
52,737 - -0.9
52,737 - -0.6
52,800 - -1.1
52,847 + +0.3
52,851 - -0.9
52,854 + -2.8
52,855 - +1.5
52,871 + -0.9
53,131 - HMPREF1058_RS02925 0.24 -0.1
53,157 + HMPREF1058_RS02925 0.28 +1.3
53,158 - HMPREF1058_RS02925 0.28 +0.0
53,220 + HMPREF1058_RS02925 0.36 -1.0
53,223 + HMPREF1058_RS02925 0.36 +0.3
53,224 - HMPREF1058_RS02925 0.36 -2.3
53,321 + HMPREF1058_RS02925 0.49 +1.9
53,455 + HMPREF1058_RS02925 0.67 +0.1
53,457 + HMPREF1058_RS02925 0.67 -1.7
53,457 + HMPREF1058_RS02925 0.67 +0.8
53,458 - HMPREF1058_RS02925 0.67 -0.4
53,458 - HMPREF1058_RS02925 0.67 -1.0
53,460 + HMPREF1058_RS02925 0.67 +0.5
53,460 + HMPREF1058_RS02925 0.67 +1.3
53,460 + HMPREF1058_RS02925 0.67 -1.5
53,471 - HMPREF1058_RS02925 0.69 -0.9
53,528 + HMPREF1058_RS02925 0.76 -0.7
53,531 - HMPREF1058_RS02925 0.76 -0.1
53,600 + HMPREF1058_RS02925 0.85 +0.8
53,600 + HMPREF1058_RS02925 0.85 +0.9
53,601 - HMPREF1058_RS02925 0.86 -1.6
53,601 - HMPREF1058_RS02925 0.86 -0.1
53,760 + -1.2
53,760 + +0.3
53,760 + +0.0
53,761 - -0.6
53,784 + +0.7

Or see this region's nucleotide sequence