Experiment: D-Mannose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS02935 and HMPREF1058_RS02930 are separated by 77 nucleotides HMPREF1058_RS02930 and HMPREF1058_RS02925 are separated by 106 nucleotides HMPREF1058_RS02925 and HMPREF1058_RS02920 are separated by 87 nucleotides
HMPREF1058_RS02935: HMPREF1058_RS02935 - sulfotransferase, at 50,454 to 51,560
_RS02935
HMPREF1058_RS02930: HMPREF1058_RS02930 - OmpA family protein, at 51,638 to 52,837
_RS02930
HMPREF1058_RS02925: HMPREF1058_RS02925 - peroxide stress protein YaaA, at 52,944 to 53,711
_RS02925
HMPREF1058_RS02920: HMPREF1058_RS02920 - TlpA family protein disulfide reductase, at 53,799 to 54,299
_RS02920
Position (kb)
51
52
53 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 50.717 kb on + strand, within HMPREF1058_RS02935 at 50.718 kb on - strand, within HMPREF1058_RS02935 at 50.750 kb on + strand, within HMPREF1058_RS02935 at 50.751 kb on - strand, within HMPREF1058_RS02935 at 50.756 kb on + strand, within HMPREF1058_RS02935 at 50.761 kb on - strand, within HMPREF1058_RS02935 at 50.907 kb on - strand, within HMPREF1058_RS02935 at 50.917 kb on - strand, within HMPREF1058_RS02935 at 50.918 kb on + strand, within HMPREF1058_RS02935 at 50.918 kb on + strand, within HMPREF1058_RS02935 at 50.922 kb on + strand, within HMPREF1058_RS02935 at 50.922 kb on + strand, within HMPREF1058_RS02935 at 50.923 kb on - strand, within HMPREF1058_RS02935 at 51.023 kb on + strand, within HMPREF1058_RS02935 at 51.084 kb on - strand, within HMPREF1058_RS02935 at 51.168 kb on + strand, within HMPREF1058_RS02935 at 51.186 kb on - strand, within HMPREF1058_RS02935 at 51.206 kb on + strand, within HMPREF1058_RS02935 at 51.291 kb on - strand, within HMPREF1058_RS02935 at 51.294 kb on + strand, within HMPREF1058_RS02935 at 51.386 kb on + strand, within HMPREF1058_RS02935 at 51.386 kb on + strand, within HMPREF1058_RS02935 at 51.390 kb on + strand, within HMPREF1058_RS02935 at 51.391 kb on - strand, within HMPREF1058_RS02935 at 51.393 kb on - strand, within HMPREF1058_RS02935 at 51.444 kb on + strand, within HMPREF1058_RS02935 at 51.445 kb on - strand, within HMPREF1058_RS02935 at 51.446 kb on + strand, within HMPREF1058_RS02935 at 51.446 kb on + strand, within HMPREF1058_RS02935 at 51.449 kb on - strand, within HMPREF1058_RS02935 at 51.465 kb on + strand at 51.467 kb on + strand at 51.468 kb on - strand at 51.477 kb on - strand at 51.477 kb on - strand at 51.483 kb on - strand at 51.483 kb on - strand at 51.483 kb on - strand at 51.486 kb on + strand at 51.487 kb on - strand at 51.610 kb on - strand at 51.634 kb on + strand at 51.635 kb on - strand at 51.635 kb on - strand at 51.635 kb on - strand at 51.743 kb on - strand at 51.895 kb on + strand, within HMPREF1058_RS02930 at 51.936 kb on - strand, within HMPREF1058_RS02930 at 52.038 kb on - strand, within HMPREF1058_RS02930 at 52.085 kb on - strand, within HMPREF1058_RS02930 at 52.085 kb on - strand, within HMPREF1058_RS02930 at 52.096 kb on + strand, within HMPREF1058_RS02930 at 52.097 kb on - strand, within HMPREF1058_RS02930 at 52.160 kb on - strand, within HMPREF1058_RS02930 at 52.273 kb on + strand, within HMPREF1058_RS02930 at 52.323 kb on + strand, within HMPREF1058_RS02930 at 52.323 kb on + strand, within HMPREF1058_RS02930 at 52.324 kb on - strand, within HMPREF1058_RS02930 at 52.366 kb on - strand, within HMPREF1058_RS02930 at 52.381 kb on + strand, within HMPREF1058_RS02930 at 52.437 kb on + strand, within HMPREF1058_RS02930 at 52.545 kb on - strand, within HMPREF1058_RS02930 at 52.551 kb on - strand, within HMPREF1058_RS02930 at 52.600 kb on + strand, within HMPREF1058_RS02930 at 52.644 kb on - strand at 52.707 kb on + strand, within HMPREF1058_RS02930 at 52.707 kb on + strand, within HMPREF1058_RS02930 at 52.708 kb on - strand, within HMPREF1058_RS02930 at 52.708 kb on - strand, within HMPREF1058_RS02930 at 52.730 kb on + strand at 52.736 kb on + strand at 52.736 kb on + strand at 52.737 kb on - strand at 52.737 kb on - strand at 52.737 kb on - strand at 52.800 kb on - strand at 52.847 kb on + strand at 52.851 kb on - strand at 52.854 kb on + strand at 52.855 kb on - strand at 52.871 kb on + strand at 53.131 kb on - strand, within HMPREF1058_RS02925 at 53.157 kb on + strand, within HMPREF1058_RS02925 at 53.158 kb on - strand, within HMPREF1058_RS02925 at 53.220 kb on + strand, within HMPREF1058_RS02925 at 53.223 kb on + strand, within HMPREF1058_RS02925 at 53.224 kb on - strand, within HMPREF1058_RS02925 at 53.321 kb on + strand, within HMPREF1058_RS02925 at 53.455 kb on + strand, within HMPREF1058_RS02925 at 53.457 kb on + strand, within HMPREF1058_RS02925 at 53.457 kb on + strand, within HMPREF1058_RS02925 at 53.458 kb on - strand, within HMPREF1058_RS02925 at 53.458 kb on - strand, within HMPREF1058_RS02925 at 53.460 kb on + strand, within HMPREF1058_RS02925 at 53.460 kb on + strand, within HMPREF1058_RS02925 at 53.460 kb on + strand, within HMPREF1058_RS02925 at 53.471 kb on - strand, within HMPREF1058_RS02925 at 53.528 kb on + strand, within HMPREF1058_RS02925 at 53.531 kb on - strand, within HMPREF1058_RS02925 at 53.600 kb on + strand, within HMPREF1058_RS02925 at 53.600 kb on + strand, within HMPREF1058_RS02925 at 53.601 kb on - strand, within HMPREF1058_RS02925 at 53.601 kb on - strand, within HMPREF1058_RS02925 at 53.760 kb on + strand at 53.760 kb on + strand at 53.760 kb on + strand at 53.761 kb on - strand at 53.784 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Mannose 10 mM (C) remove 50,717 + HMPREF1058_RS02935 0.24 +0.2 50,718 - HMPREF1058_RS02935 0.24 +0.6 50,750 + HMPREF1058_RS02935 0.27 -0.3 50,751 - HMPREF1058_RS02935 0.27 -0.8 50,756 + HMPREF1058_RS02935 0.27 -0.8 50,761 - HMPREF1058_RS02935 0.28 +0.2 50,907 - HMPREF1058_RS02935 0.41 -0.8 50,917 - HMPREF1058_RS02935 0.42 +0.4 50,918 + HMPREF1058_RS02935 0.42 -1.2 50,918 + HMPREF1058_RS02935 0.42 -1.1 50,922 + HMPREF1058_RS02935 0.42 -1.1 50,922 + HMPREF1058_RS02935 0.42 -0.0 50,923 - HMPREF1058_RS02935 0.42 -0.4 51,023 + HMPREF1058_RS02935 0.51 -0.2 51,084 - HMPREF1058_RS02935 0.57 -1.0 51,168 + HMPREF1058_RS02935 0.64 -0.4 51,186 - HMPREF1058_RS02935 0.66 +0.1 51,206 + HMPREF1058_RS02935 0.68 -0.0 51,291 - HMPREF1058_RS02935 0.76 -0.7 51,294 + HMPREF1058_RS02935 0.76 +0.5 51,386 + HMPREF1058_RS02935 0.84 -0.2 51,386 + HMPREF1058_RS02935 0.84 -0.7 51,390 + HMPREF1058_RS02935 0.85 -0.5 51,391 - HMPREF1058_RS02935 0.85 -0.1 51,393 - HMPREF1058_RS02935 0.85 +0.8 51,444 + HMPREF1058_RS02935 0.89 -1.1 51,445 - HMPREF1058_RS02935 0.90 +0.9 51,446 + HMPREF1058_RS02935 0.90 -1.0 51,446 + HMPREF1058_RS02935 0.90 -0.4 51,449 - HMPREF1058_RS02935 0.90 -1.3 51,465 + -2.5 51,467 + -1.6 51,468 - -0.3 51,477 - -0.6 51,477 - -0.1 51,483 - -0.3 51,483 - -0.7 51,483 - +1.0 51,486 + +0.0 51,487 - -0.6 51,610 - -1.3 51,634 + +0.7 51,635 - -0.9 51,635 - -2.2 51,635 - -0.7 51,743 - -2.1 51,895 + HMPREF1058_RS02930 0.21 -0.5 51,936 - HMPREF1058_RS02930 0.25 -4.4 52,038 - HMPREF1058_RS02930 0.33 -0.8 52,085 - HMPREF1058_RS02930 0.37 -1.9 52,085 - HMPREF1058_RS02930 0.37 -1.0 52,096 + HMPREF1058_RS02930 0.38 -0.2 52,097 - HMPREF1058_RS02930 0.38 -2.3 52,160 - HMPREF1058_RS02930 0.43 -1.8 52,273 + HMPREF1058_RS02930 0.53 -0.9 52,323 + HMPREF1058_RS02930 0.57 -1.0 52,323 + HMPREF1058_RS02930 0.57 -2.5 52,324 - HMPREF1058_RS02930 0.57 -1.1 52,366 - HMPREF1058_RS02930 0.61 -2.2 52,381 + HMPREF1058_RS02930 0.62 -2.5 52,437 + HMPREF1058_RS02930 0.67 -1.8 52,545 - HMPREF1058_RS02930 0.76 -0.7 52,551 - HMPREF1058_RS02930 0.76 -1.1 52,600 + HMPREF1058_RS02930 0.80 -1.0 52,644 - -0.9 52,707 + HMPREF1058_RS02930 0.89 -1.9 52,707 + HMPREF1058_RS02930 0.89 -1.0 52,708 - HMPREF1058_RS02930 0.89 +0.9 52,708 - HMPREF1058_RS02930 0.89 +0.3 52,730 + -0.2 52,736 + +1.0 52,736 + +0.6 52,737 - -2.5 52,737 - -0.9 52,737 - -0.6 52,800 - -1.1 52,847 + +0.3 52,851 - -0.9 52,854 + -2.8 52,855 - +1.5 52,871 + -0.9 53,131 - HMPREF1058_RS02925 0.24 -0.1 53,157 + HMPREF1058_RS02925 0.28 +1.3 53,158 - HMPREF1058_RS02925 0.28 +0.0 53,220 + HMPREF1058_RS02925 0.36 -1.0 53,223 + HMPREF1058_RS02925 0.36 +0.3 53,224 - HMPREF1058_RS02925 0.36 -2.3 53,321 + HMPREF1058_RS02925 0.49 +1.9 53,455 + HMPREF1058_RS02925 0.67 +0.1 53,457 + HMPREF1058_RS02925 0.67 -1.7 53,457 + HMPREF1058_RS02925 0.67 +0.8 53,458 - HMPREF1058_RS02925 0.67 -0.4 53,458 - HMPREF1058_RS02925 0.67 -1.0 53,460 + HMPREF1058_RS02925 0.67 +0.5 53,460 + HMPREF1058_RS02925 0.67 +1.3 53,460 + HMPREF1058_RS02925 0.67 -1.5 53,471 - HMPREF1058_RS02925 0.69 -0.9 53,528 + HMPREF1058_RS02925 0.76 -0.7 53,531 - HMPREF1058_RS02925 0.76 -0.1 53,600 + HMPREF1058_RS02925 0.85 +0.8 53,600 + HMPREF1058_RS02925 0.85 +0.9 53,601 - HMPREF1058_RS02925 0.86 -1.6 53,601 - HMPREF1058_RS02925 0.86 -0.1 53,760 + -1.2 53,760 + +0.3 53,760 + +0.0 53,761 - -0.6 53,784 + +0.7
Or see this region's nucleotide sequence