Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS02110

Experiment: D-Mannose 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS02115 and HMPREF1058_RS02110 are separated by 466 nucleotidesHMPREF1058_RS02110 and HMPREF1058_RS02105 are separated by 451 nucleotides HMPREF1058_RS02115: HMPREF1058_RS02115 - NADP-specific glutamate dehydrogenase, at 282,013 to 283,347 _RS02115 HMPREF1058_RS02110: HMPREF1058_RS02110 - NADP-dependent malic enzyme, at 283,814 to 286,099 _RS02110 HMPREF1058_RS02105: HMPREF1058_RS02105 - efflux RND transporter periplasmic adaptor subunit, at 286,551 to 287,762 _RS02105 Position (kb) 283 284 285 286 287Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 282.832 kb on + strand, within HMPREF1058_RS02115at 282.848 kb on - strand, within HMPREF1058_RS02115at 282.868 kb on + strand, within HMPREF1058_RS02115at 282.869 kb on - strand, within HMPREF1058_RS02115at 283.000 kb on - strand, within HMPREF1058_RS02115at 283.057 kb on + strand, within HMPREF1058_RS02115at 283.108 kb on - strand, within HMPREF1058_RS02115at 283.108 kb on - strand, within HMPREF1058_RS02115at 283.336 kb on - strandat 283.352 kb on + strandat 283.363 kb on - strandat 283.376 kb on - strandat 283.378 kb on + strandat 283.533 kb on + strandat 283.619 kb on - strandat 283.685 kb on + strandat 283.686 kb on - strandat 283.688 kb on + strandat 283.736 kb on - strandat 283.743 kb on + strandat 283.773 kb on - strandat 283.784 kb on + strandat 283.784 kb on + strandat 283.790 kb on + strandat 283.812 kb on - strandat 283.875 kb on - strandat 283.967 kb on - strandat 284.015 kb on + strandat 284.028 kb on - strandat 284.114 kb on + strand, within HMPREF1058_RS02110at 284.115 kb on - strand, within HMPREF1058_RS02110at 284.143 kb on + strand, within HMPREF1058_RS02110at 284.143 kb on + strand, within HMPREF1058_RS02110at 284.144 kb on - strand, within HMPREF1058_RS02110at 284.163 kb on - strand, within HMPREF1058_RS02110at 284.168 kb on - strand, within HMPREF1058_RS02110at 284.185 kb on + strand, within HMPREF1058_RS02110at 284.328 kb on + strand, within HMPREF1058_RS02110at 284.328 kb on + strand, within HMPREF1058_RS02110at 284.328 kb on + strand, within HMPREF1058_RS02110at 284.428 kb on - strand, within HMPREF1058_RS02110at 284.435 kb on - strand, within HMPREF1058_RS02110at 284.438 kb on + strand, within HMPREF1058_RS02110at 284.438 kb on + strand, within HMPREF1058_RS02110at 284.439 kb on - strand, within HMPREF1058_RS02110at 284.684 kb on + strand, within HMPREF1058_RS02110at 284.687 kb on + strand, within HMPREF1058_RS02110at 284.687 kb on + strand, within HMPREF1058_RS02110at 284.766 kb on - strand, within HMPREF1058_RS02110at 284.857 kb on - strand, within HMPREF1058_RS02110at 285.103 kb on + strand, within HMPREF1058_RS02110at 285.125 kb on - strand, within HMPREF1058_RS02110at 285.140 kb on + strand, within HMPREF1058_RS02110at 285.145 kb on + strand, within HMPREF1058_RS02110at 285.188 kb on + strand, within HMPREF1058_RS02110at 285.189 kb on - strand, within HMPREF1058_RS02110at 285.358 kb on + strand, within HMPREF1058_RS02110at 285.359 kb on - strand, within HMPREF1058_RS02110at 285.359 kb on - strand, within HMPREF1058_RS02110at 285.359 kb on - strand, within HMPREF1058_RS02110at 285.363 kb on - strand, within HMPREF1058_RS02110at 285.444 kb on - strand, within HMPREF1058_RS02110at 285.473 kb on + strand, within HMPREF1058_RS02110at 285.480 kb on - strand, within HMPREF1058_RS02110at 285.813 kb on - strand, within HMPREF1058_RS02110at 285.855 kb on - strand, within HMPREF1058_RS02110at 285.855 kb on - strand, within HMPREF1058_RS02110at 285.893 kb on - strandat 285.902 kb on + strandat 285.919 kb on + strandat 285.920 kb on - strandat 285.922 kb on - strandat 286.112 kb on + strandat 286.114 kb on + strandat 286.122 kb on + strandat 286.309 kb on + strandat 286.359 kb on + strandat 286.395 kb on - strandat 286.502 kb on - strandat 286.527 kb on - strandat 286.547 kb on - strandat 286.568 kb on + strandat 286.571 kb on + strandat 286.726 kb on - strand, within HMPREF1058_RS02105at 286.894 kb on + strand, within HMPREF1058_RS02105at 286.895 kb on - strand, within HMPREF1058_RS02105at 286.956 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Mannose 10 mM (C)
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282,832 + HMPREF1058_RS02115 0.61 -3.4
282,848 - HMPREF1058_RS02115 0.63 -3.3
282,868 + HMPREF1058_RS02115 0.64 -2.8
282,869 - HMPREF1058_RS02115 0.64 -2.6
283,000 - HMPREF1058_RS02115 0.74 -4.1
283,057 + HMPREF1058_RS02115 0.78 -3.2
283,108 - HMPREF1058_RS02115 0.82 -1.8
283,108 - HMPREF1058_RS02115 0.82 -4.7
283,336 - -4.4
283,352 + -3.3
283,363 - -2.9
283,376 - -0.2
283,378 + -3.8
283,533 + -0.3
283,619 - -0.1
283,685 + -0.4
283,686 - -0.7
283,688 + -1.8
283,736 - +0.5
283,743 + -2.0
283,773 - -1.5
283,784 + -1.8
283,784 + -2.9
283,790 + -1.2
283,812 - +0.0
283,875 - -2.4
283,967 - -2.7
284,015 + -3.1
284,028 - -4.5
284,114 + HMPREF1058_RS02110 0.13 -2.8
284,115 - HMPREF1058_RS02110 0.13 -3.8
284,143 + HMPREF1058_RS02110 0.14 -3.5
284,143 + HMPREF1058_RS02110 0.14 -2.4
284,144 - HMPREF1058_RS02110 0.14 -3.8
284,163 - HMPREF1058_RS02110 0.15 -3.7
284,168 - HMPREF1058_RS02110 0.15 +0.9
284,185 + HMPREF1058_RS02110 0.16 -2.9
284,328 + HMPREF1058_RS02110 0.22 -2.1
284,328 + HMPREF1058_RS02110 0.22 -3.9
284,328 + HMPREF1058_RS02110 0.22 -2.9
284,428 - HMPREF1058_RS02110 0.27 -4.5
284,435 - HMPREF1058_RS02110 0.27 -2.3
284,438 + HMPREF1058_RS02110 0.27 -1.4
284,438 + HMPREF1058_RS02110 0.27 -0.4
284,439 - HMPREF1058_RS02110 0.27 -3.6
284,684 + HMPREF1058_RS02110 0.38 -2.0
284,687 + HMPREF1058_RS02110 0.38 -0.6
284,687 + HMPREF1058_RS02110 0.38 -1.7
284,766 - HMPREF1058_RS02110 0.42 -2.7
284,857 - HMPREF1058_RS02110 0.46 -2.7
285,103 + HMPREF1058_RS02110 0.56 -3.4
285,125 - HMPREF1058_RS02110 0.57 -2.9
285,140 + HMPREF1058_RS02110 0.58 +0.5
285,145 + HMPREF1058_RS02110 0.58 -2.0
285,188 + HMPREF1058_RS02110 0.60 -1.7
285,189 - HMPREF1058_RS02110 0.60 -2.9
285,358 + HMPREF1058_RS02110 0.68 -2.9
285,359 - HMPREF1058_RS02110 0.68 -1.6
285,359 - HMPREF1058_RS02110 0.68 -3.7
285,359 - HMPREF1058_RS02110 0.68 -2.1
285,363 - HMPREF1058_RS02110 0.68 -3.9
285,444 - HMPREF1058_RS02110 0.71 -1.6
285,473 + HMPREF1058_RS02110 0.73 -2.3
285,480 - HMPREF1058_RS02110 0.73 -3.3
285,813 - HMPREF1058_RS02110 0.87 -1.9
285,855 - HMPREF1058_RS02110 0.89 -3.1
285,855 - HMPREF1058_RS02110 0.89 -2.1
285,893 - -2.0
285,902 + -3.2
285,919 + -1.2
285,920 - -1.5
285,922 - -3.7
286,112 + -3.8
286,114 + -0.8
286,122 + +0.7
286,309 + -2.3
286,359 + +1.9
286,395 - +2.1
286,502 - -0.6
286,527 - -2.4
286,547 - -2.4
286,568 + -1.5
286,571 + -0.9
286,726 - HMPREF1058_RS02105 0.14 -3.7
286,894 + HMPREF1058_RS02105 0.28 -0.3
286,895 - HMPREF1058_RS02105 0.28 -1.5
286,956 + -0.1

Or see this region's nucleotide sequence