Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS02080

Experiment: D-Mannose 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS02090 and HMPREF1058_RS02085 are separated by 29 nucleotidesHMPREF1058_RS02085 and HMPREF1058_RS02080 are separated by 36 nucleotidesHMPREF1058_RS02080 and HMPREF1058_RS02075 are separated by 23 nucleotides HMPREF1058_RS02090: HMPREF1058_RS02090 - acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase, at 292,455 to 293,222 _RS02090 HMPREF1058_RS02085: HMPREF1058_RS02085 - TetR/AcrR family transcriptional regulator, at 293,252 to 293,905 _RS02085 HMPREF1058_RS02080: HMPREF1058_RS02080 - TolC family protein, at 293,942 to 295,267 _RS02080 HMPREF1058_RS02075: HMPREF1058_RS02075 - efflux RND transporter periplasmic adaptor subunit, at 295,291 to 296,313 _RS02075 Position (kb) 293 294 295 296Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 292.964 kb on + strand, within HMPREF1058_RS02090at 293.076 kb on - strand, within HMPREF1058_RS02090at 293.077 kb on + strand, within HMPREF1058_RS02090at 293.077 kb on + strand, within HMPREF1058_RS02090at 293.094 kb on - strand, within HMPREF1058_RS02090at 293.095 kb on + strand, within HMPREF1058_RS02090at 293.101 kb on - strand, within HMPREF1058_RS02090at 293.112 kb on - strand, within HMPREF1058_RS02090at 293.112 kb on - strand, within HMPREF1058_RS02090at 293.112 kb on - strand, within HMPREF1058_RS02090at 293.118 kb on - strand, within HMPREF1058_RS02090at 293.202 kb on - strandat 293.220 kb on + strandat 293.242 kb on + strandat 293.248 kb on - strandat 293.380 kb on - strand, within HMPREF1058_RS02085at 293.383 kb on + strand, within HMPREF1058_RS02085at 293.383 kb on + strand, within HMPREF1058_RS02085at 293.383 kb on + strand, within HMPREF1058_RS02085at 293.383 kb on + strand, within HMPREF1058_RS02085at 293.389 kb on + strand, within HMPREF1058_RS02085at 293.395 kb on + strand, within HMPREF1058_RS02085at 293.451 kb on + strand, within HMPREF1058_RS02085at 293.452 kb on - strand, within HMPREF1058_RS02085at 293.452 kb on - strand, within HMPREF1058_RS02085at 293.474 kb on + strand, within HMPREF1058_RS02085at 293.474 kb on + strand, within HMPREF1058_RS02085at 293.475 kb on - strand, within HMPREF1058_RS02085at 293.475 kb on - strand, within HMPREF1058_RS02085at 293.476 kb on + strand, within HMPREF1058_RS02085at 293.605 kb on - strand, within HMPREF1058_RS02085at 293.710 kb on + strand, within HMPREF1058_RS02085at 293.711 kb on - strand, within HMPREF1058_RS02085at 293.727 kb on + strand, within HMPREF1058_RS02085at 293.728 kb on - strand, within HMPREF1058_RS02085at 293.763 kb on + strand, within HMPREF1058_RS02085at 293.805 kb on + strand, within HMPREF1058_RS02085at 293.806 kb on - strand, within HMPREF1058_RS02085at 293.806 kb on - strand, within HMPREF1058_RS02085at 293.815 kb on + strand, within HMPREF1058_RS02085at 293.815 kb on + strand, within HMPREF1058_RS02085at 293.815 kb on + strand, within HMPREF1058_RS02085at 293.816 kb on - strand, within HMPREF1058_RS02085at 293.816 kb on - strand, within HMPREF1058_RS02085at 293.816 kb on - strand, within HMPREF1058_RS02085at 293.893 kb on + strandat 293.893 kb on + strandat 293.893 kb on + strandat 293.894 kb on - strandat 293.898 kb on - strandat 293.898 kb on - strandat 293.914 kb on + strandat 293.927 kb on - strandat 293.991 kb on + strandat 293.991 kb on + strandat 294.131 kb on + strand, within HMPREF1058_RS02080at 294.238 kb on + strand, within HMPREF1058_RS02080at 294.238 kb on + strand, within HMPREF1058_RS02080at 294.238 kb on + strand, within HMPREF1058_RS02080at 294.238 kb on + strand, within HMPREF1058_RS02080at 294.242 kb on + strand, within HMPREF1058_RS02080at 294.242 kb on + strand, within HMPREF1058_RS02080at 294.242 kb on + strand, within HMPREF1058_RS02080at 294.243 kb on - strand, within HMPREF1058_RS02080at 294.243 kb on - strand, within HMPREF1058_RS02080at 294.243 kb on - strand, within HMPREF1058_RS02080at 294.244 kb on + strand, within HMPREF1058_RS02080at 294.313 kb on + strand, within HMPREF1058_RS02080at 294.314 kb on - strand, within HMPREF1058_RS02080at 294.440 kb on - strand, within HMPREF1058_RS02080at 294.454 kb on + strand, within HMPREF1058_RS02080at 294.458 kb on + strand, within HMPREF1058_RS02080at 294.458 kb on + strand, within HMPREF1058_RS02080at 294.460 kb on + strand, within HMPREF1058_RS02080at 294.460 kb on + strand, within HMPREF1058_RS02080at 294.461 kb on - strand, within HMPREF1058_RS02080at 294.475 kb on + strand, within HMPREF1058_RS02080at 294.476 kb on - strand, within HMPREF1058_RS02080at 294.480 kb on - strand, within HMPREF1058_RS02080at 294.480 kb on - strand, within HMPREF1058_RS02080at 294.515 kb on - strand, within HMPREF1058_RS02080at 294.667 kb on + strand, within HMPREF1058_RS02080at 294.713 kb on - strand, within HMPREF1058_RS02080at 294.779 kb on - strand, within HMPREF1058_RS02080at 294.816 kb on - strand, within HMPREF1058_RS02080at 294.817 kb on + strand, within HMPREF1058_RS02080at 294.818 kb on - strand, within HMPREF1058_RS02080at 294.818 kb on - strand, within HMPREF1058_RS02080at 294.818 kb on - strand, within HMPREF1058_RS02080at 294.821 kb on + strand, within HMPREF1058_RS02080at 294.821 kb on + strand, within HMPREF1058_RS02080at 294.822 kb on - strand, within HMPREF1058_RS02080at 294.824 kb on - strand, within HMPREF1058_RS02080at 294.877 kb on + strand, within HMPREF1058_RS02080at 294.926 kb on - strandat 295.061 kb on - strand, within HMPREF1058_RS02080at 295.094 kb on - strand, within HMPREF1058_RS02080at 295.097 kb on - strand, within HMPREF1058_RS02080at 295.097 kb on - strand, within HMPREF1058_RS02080at 295.184 kb on + strandat 295.233 kb on + strandat 295.240 kb on - strandat 295.255 kb on - strandat 295.290 kb on + strandat 295.332 kb on + strandat 295.333 kb on - strandat 295.366 kb on - strandat 295.436 kb on + strand, within HMPREF1058_RS02075at 295.446 kb on - strand, within HMPREF1058_RS02075at 295.453 kb on + strand, within HMPREF1058_RS02075at 295.455 kb on + strand, within HMPREF1058_RS02075at 295.521 kb on + strand, within HMPREF1058_RS02075at 295.547 kb on + strand, within HMPREF1058_RS02075at 295.639 kb on - strand, within HMPREF1058_RS02075at 295.710 kb on - strand, within HMPREF1058_RS02075at 295.723 kb on + strand, within HMPREF1058_RS02075at 295.724 kb on - strand, within HMPREF1058_RS02075at 295.743 kb on + strand, within HMPREF1058_RS02075at 295.806 kb on - strand, within HMPREF1058_RS02075at 295.886 kb on - strand, within HMPREF1058_RS02075at 295.908 kb on + strand, within HMPREF1058_RS02075at 295.936 kb on + strand, within HMPREF1058_RS02075at 295.936 kb on + strand, within HMPREF1058_RS02075at 296.001 kb on + strand, within HMPREF1058_RS02075at 296.018 kb on + strand, within HMPREF1058_RS02075at 296.153 kb on + strand, within HMPREF1058_RS02075at 296.154 kb on - strand, within HMPREF1058_RS02075at 296.221 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Mannose 10 mM (C)
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292,964 + HMPREF1058_RS02090 0.66 -0.3
293,076 - HMPREF1058_RS02090 0.81 -1.8
293,077 + HMPREF1058_RS02090 0.81 -2.6
293,077 + HMPREF1058_RS02090 0.81 -0.8
293,094 - HMPREF1058_RS02090 0.83 +0.5
293,095 + HMPREF1058_RS02090 0.83 -2.6
293,101 - HMPREF1058_RS02090 0.84 +2.2
293,112 - HMPREF1058_RS02090 0.86 -1.0
293,112 - HMPREF1058_RS02090 0.86 +0.3
293,112 - HMPREF1058_RS02090 0.86 +2.5
293,118 - HMPREF1058_RS02090 0.86 -1.8
293,202 - -0.4
293,220 + -2.5
293,242 + -0.5
293,248 - -0.8
293,380 - HMPREF1058_RS02085 0.20 +0.1
293,383 + HMPREF1058_RS02085 0.20 -0.5
293,383 + HMPREF1058_RS02085 0.20 +0.2
293,383 + HMPREF1058_RS02085 0.20 -0.3
293,383 + HMPREF1058_RS02085 0.20 -0.8
293,389 + HMPREF1058_RS02085 0.21 -0.9
293,395 + HMPREF1058_RS02085 0.22 -2.1
293,451 + HMPREF1058_RS02085 0.30 +0.1
293,452 - HMPREF1058_RS02085 0.31 +1.2
293,452 - HMPREF1058_RS02085 0.31 +0.1
293,474 + HMPREF1058_RS02085 0.34 +0.1
293,474 + HMPREF1058_RS02085 0.34 +0.5
293,475 - HMPREF1058_RS02085 0.34 -0.0
293,475 - HMPREF1058_RS02085 0.34 -0.6
293,476 + HMPREF1058_RS02085 0.34 -0.7
293,605 - HMPREF1058_RS02085 0.54 -0.9
293,710 + HMPREF1058_RS02085 0.70 +0.8
293,711 - HMPREF1058_RS02085 0.70 -0.4
293,727 + HMPREF1058_RS02085 0.73 -0.7
293,728 - HMPREF1058_RS02085 0.73 -0.4
293,763 + HMPREF1058_RS02085 0.78 +0.3
293,805 + HMPREF1058_RS02085 0.85 -0.4
293,806 - HMPREF1058_RS02085 0.85 -3.0
293,806 - HMPREF1058_RS02085 0.85 +1.1
293,815 + HMPREF1058_RS02085 0.86 -0.1
293,815 + HMPREF1058_RS02085 0.86 -0.3
293,815 + HMPREF1058_RS02085 0.86 -0.6
293,816 - HMPREF1058_RS02085 0.86 -1.4
293,816 - HMPREF1058_RS02085 0.86 +0.5
293,816 - HMPREF1058_RS02085 0.86 -2.9
293,893 + -0.5
293,893 + -1.1
293,893 + -0.3
293,894 - +1.7
293,898 - -2.3
293,898 - -1.0
293,914 + -0.7
293,927 - -1.4
293,991 + -1.5
293,991 + -2.7
294,131 + HMPREF1058_RS02080 0.14 -2.5
294,238 + HMPREF1058_RS02080 0.22 -2.6
294,238 + HMPREF1058_RS02080 0.22 -1.8
294,238 + HMPREF1058_RS02080 0.22 -2.3
294,238 + HMPREF1058_RS02080 0.22 -2.8
294,242 + HMPREF1058_RS02080 0.23 -1.3
294,242 + HMPREF1058_RS02080 0.23 +0.3
294,242 + HMPREF1058_RS02080 0.23 -1.6
294,243 - HMPREF1058_RS02080 0.23 -1.6
294,243 - HMPREF1058_RS02080 0.23 -0.1
294,243 - HMPREF1058_RS02080 0.23 -2.5
294,244 + HMPREF1058_RS02080 0.23 -2.0
294,313 + HMPREF1058_RS02080 0.28 -2.7
294,314 - HMPREF1058_RS02080 0.28 -2.4
294,440 - HMPREF1058_RS02080 0.38 +0.3
294,454 + HMPREF1058_RS02080 0.39 -2.5
294,458 + HMPREF1058_RS02080 0.39 -0.7
294,458 + HMPREF1058_RS02080 0.39 -4.5
294,460 + HMPREF1058_RS02080 0.39 -3.3
294,460 + HMPREF1058_RS02080 0.39 -1.7
294,461 - HMPREF1058_RS02080 0.39 -2.0
294,475 + HMPREF1058_RS02080 0.40 -2.9
294,476 - HMPREF1058_RS02080 0.40 -1.7
294,480 - HMPREF1058_RS02080 0.41 -1.4
294,480 - HMPREF1058_RS02080 0.41 -1.8
294,515 - HMPREF1058_RS02080 0.43 -0.4
294,667 + HMPREF1058_RS02080 0.55 -2.8
294,713 - HMPREF1058_RS02080 0.58 -3.5
294,779 - HMPREF1058_RS02080 0.63 -3.1
294,816 - HMPREF1058_RS02080 0.66 -1.5
294,817 + HMPREF1058_RS02080 0.66 -1.9
294,818 - HMPREF1058_RS02080 0.66 -1.6
294,818 - HMPREF1058_RS02080 0.66 -3.7
294,818 - HMPREF1058_RS02080 0.66 -3.8
294,821 + HMPREF1058_RS02080 0.66 -0.9
294,821 + HMPREF1058_RS02080 0.66 -4.4
294,822 - HMPREF1058_RS02080 0.66 -0.9
294,824 - HMPREF1058_RS02080 0.67 -2.9
294,877 + HMPREF1058_RS02080 0.71 -2.3
294,926 - +0.3
295,061 - HMPREF1058_RS02080 0.84 -1.2
295,094 - HMPREF1058_RS02080 0.87 -3.5
295,097 - HMPREF1058_RS02080 0.87 -2.3
295,097 - HMPREF1058_RS02080 0.87 -2.3
295,184 + -1.5
295,233 + -3.6
295,240 - -2.0
295,255 - -1.5
295,290 + -0.7
295,332 + -2.2
295,333 - -1.7
295,366 - +0.3
295,436 + HMPREF1058_RS02075 0.14 -1.7
295,446 - HMPREF1058_RS02075 0.15 -1.9
295,453 + HMPREF1058_RS02075 0.16 -2.9
295,455 + HMPREF1058_RS02075 0.16 -2.9
295,521 + HMPREF1058_RS02075 0.22 -1.6
295,547 + HMPREF1058_RS02075 0.25 -2.3
295,639 - HMPREF1058_RS02075 0.34 -2.0
295,710 - HMPREF1058_RS02075 0.41 +0.7
295,723 + HMPREF1058_RS02075 0.42 -2.8
295,724 - HMPREF1058_RS02075 0.42 -3.1
295,743 + HMPREF1058_RS02075 0.44 -0.8
295,806 - HMPREF1058_RS02075 0.50 -4.8
295,886 - HMPREF1058_RS02075 0.58 -0.4
295,908 + HMPREF1058_RS02075 0.60 -2.2
295,936 + HMPREF1058_RS02075 0.63 -1.1
295,936 + HMPREF1058_RS02075 0.63 -3.1
296,001 + HMPREF1058_RS02075 0.69 -2.1
296,018 + HMPREF1058_RS02075 0.71 -1.2
296,153 + HMPREF1058_RS02075 0.84 -1.1
296,154 - HMPREF1058_RS02075 0.84 -1.0
296,221 + -0.3

Or see this region's nucleotide sequence