Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS02075

Experiment: D-Mannose 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS02080 and HMPREF1058_RS02075 are separated by 23 nucleotidesHMPREF1058_RS02075 and HMPREF1058_RS02070 are separated by 81 nucleotides HMPREF1058_RS02080: HMPREF1058_RS02080 - TolC family protein, at 293,942 to 295,267 _RS02080 HMPREF1058_RS02075: HMPREF1058_RS02075 - efflux RND transporter periplasmic adaptor subunit, at 295,291 to 296,313 _RS02075 HMPREF1058_RS02070: HMPREF1058_RS02070 - efflux RND transporter permease subunit, at 296,395 to 299,565 _RS02070 Position (kb) 295 296 297Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 294.313 kb on + strand, within HMPREF1058_RS02080at 294.314 kb on - strand, within HMPREF1058_RS02080at 294.440 kb on - strand, within HMPREF1058_RS02080at 294.454 kb on + strand, within HMPREF1058_RS02080at 294.458 kb on + strand, within HMPREF1058_RS02080at 294.458 kb on + strand, within HMPREF1058_RS02080at 294.460 kb on + strand, within HMPREF1058_RS02080at 294.460 kb on + strand, within HMPREF1058_RS02080at 294.461 kb on - strand, within HMPREF1058_RS02080at 294.475 kb on + strand, within HMPREF1058_RS02080at 294.476 kb on - strand, within HMPREF1058_RS02080at 294.480 kb on - strand, within HMPREF1058_RS02080at 294.480 kb on - strand, within HMPREF1058_RS02080at 294.515 kb on - strand, within HMPREF1058_RS02080at 294.667 kb on + strand, within HMPREF1058_RS02080at 294.713 kb on - strand, within HMPREF1058_RS02080at 294.779 kb on - strand, within HMPREF1058_RS02080at 294.816 kb on - strand, within HMPREF1058_RS02080at 294.817 kb on + strand, within HMPREF1058_RS02080at 294.818 kb on - strand, within HMPREF1058_RS02080at 294.818 kb on - strand, within HMPREF1058_RS02080at 294.818 kb on - strand, within HMPREF1058_RS02080at 294.821 kb on + strand, within HMPREF1058_RS02080at 294.821 kb on + strand, within HMPREF1058_RS02080at 294.822 kb on - strand, within HMPREF1058_RS02080at 294.824 kb on - strand, within HMPREF1058_RS02080at 294.877 kb on + strand, within HMPREF1058_RS02080at 294.926 kb on - strandat 295.061 kb on - strand, within HMPREF1058_RS02080at 295.094 kb on - strand, within HMPREF1058_RS02080at 295.097 kb on - strand, within HMPREF1058_RS02080at 295.097 kb on - strand, within HMPREF1058_RS02080at 295.184 kb on + strandat 295.233 kb on + strandat 295.240 kb on - strandat 295.255 kb on - strandat 295.290 kb on + strandat 295.332 kb on + strandat 295.333 kb on - strandat 295.366 kb on - strandat 295.436 kb on + strand, within HMPREF1058_RS02075at 295.446 kb on - strand, within HMPREF1058_RS02075at 295.453 kb on + strand, within HMPREF1058_RS02075at 295.455 kb on + strand, within HMPREF1058_RS02075at 295.521 kb on + strand, within HMPREF1058_RS02075at 295.547 kb on + strand, within HMPREF1058_RS02075at 295.639 kb on - strand, within HMPREF1058_RS02075at 295.710 kb on - strand, within HMPREF1058_RS02075at 295.723 kb on + strand, within HMPREF1058_RS02075at 295.724 kb on - strand, within HMPREF1058_RS02075at 295.743 kb on + strand, within HMPREF1058_RS02075at 295.806 kb on - strand, within HMPREF1058_RS02075at 295.886 kb on - strand, within HMPREF1058_RS02075at 295.908 kb on + strand, within HMPREF1058_RS02075at 295.936 kb on + strand, within HMPREF1058_RS02075at 295.936 kb on + strand, within HMPREF1058_RS02075at 296.001 kb on + strand, within HMPREF1058_RS02075at 296.018 kb on + strand, within HMPREF1058_RS02075at 296.153 kb on + strand, within HMPREF1058_RS02075at 296.154 kb on - strand, within HMPREF1058_RS02075at 296.221 kb on + strandat 296.332 kb on + strandat 296.333 kb on - strandat 296.346 kb on + strandat 296.354 kb on + strandat 296.354 kb on + strandat 296.355 kb on - strandat 296.355 kb on - strandat 296.355 kb on - strandat 296.356 kb on + strandat 296.441 kb on + strandat 296.517 kb on + strandat 296.536 kb on - strandat 296.631 kb on + strandat 296.632 kb on - strandat 296.632 kb on - strandat 296.635 kb on - strandat 296.635 kb on - strandat 296.656 kb on - strandat 296.690 kb on - strandat 296.781 kb on + strand, within HMPREF1058_RS02070at 296.852 kb on - strand, within HMPREF1058_RS02070at 296.858 kb on + strand, within HMPREF1058_RS02070at 296.869 kb on - strand, within HMPREF1058_RS02070at 296.874 kb on - strand, within HMPREF1058_RS02070at 296.946 kb on + strand, within HMPREF1058_RS02070at 296.951 kb on - strand, within HMPREF1058_RS02070at 296.951 kb on - strand, within HMPREF1058_RS02070at 296.977 kb on + strand, within HMPREF1058_RS02070at 297.024 kb on + strand, within HMPREF1058_RS02070at 297.030 kb on + strand, within HMPREF1058_RS02070at 297.031 kb on - strand, within HMPREF1058_RS02070at 297.063 kb on + strand, within HMPREF1058_RS02070at 297.063 kb on + strand, within HMPREF1058_RS02070at 297.063 kb on + strand, within HMPREF1058_RS02070at 297.063 kb on + strand, within HMPREF1058_RS02070at 297.064 kb on - strand, within HMPREF1058_RS02070at 297.064 kb on - strand, within HMPREF1058_RS02070at 297.068 kb on - strand, within HMPREF1058_RS02070at 297.122 kb on + strand, within HMPREF1058_RS02070at 297.122 kb on + strand, within HMPREF1058_RS02070at 297.151 kb on + strand, within HMPREF1058_RS02070at 297.209 kb on - strand, within HMPREF1058_RS02070at 297.211 kb on - strand, within HMPREF1058_RS02070at 297.242 kb on + strand, within HMPREF1058_RS02070at 297.242 kb on + strand, within HMPREF1058_RS02070at 297.288 kb on - strand, within HMPREF1058_RS02070at 297.303 kb on + strand, within HMPREF1058_RS02070at 297.304 kb on - strand, within HMPREF1058_RS02070

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Mannose 10 mM (C)
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294,313 + HMPREF1058_RS02080 0.28 -2.7
294,314 - HMPREF1058_RS02080 0.28 -2.4
294,440 - HMPREF1058_RS02080 0.38 +0.3
294,454 + HMPREF1058_RS02080 0.39 -2.5
294,458 + HMPREF1058_RS02080 0.39 -0.7
294,458 + HMPREF1058_RS02080 0.39 -4.5
294,460 + HMPREF1058_RS02080 0.39 -3.3
294,460 + HMPREF1058_RS02080 0.39 -1.7
294,461 - HMPREF1058_RS02080 0.39 -2.0
294,475 + HMPREF1058_RS02080 0.40 -2.9
294,476 - HMPREF1058_RS02080 0.40 -1.7
294,480 - HMPREF1058_RS02080 0.41 -1.4
294,480 - HMPREF1058_RS02080 0.41 -1.8
294,515 - HMPREF1058_RS02080 0.43 -0.4
294,667 + HMPREF1058_RS02080 0.55 -2.8
294,713 - HMPREF1058_RS02080 0.58 -3.5
294,779 - HMPREF1058_RS02080 0.63 -3.1
294,816 - HMPREF1058_RS02080 0.66 -1.5
294,817 + HMPREF1058_RS02080 0.66 -1.9
294,818 - HMPREF1058_RS02080 0.66 -1.6
294,818 - HMPREF1058_RS02080 0.66 -3.7
294,818 - HMPREF1058_RS02080 0.66 -3.8
294,821 + HMPREF1058_RS02080 0.66 -0.9
294,821 + HMPREF1058_RS02080 0.66 -4.4
294,822 - HMPREF1058_RS02080 0.66 -0.9
294,824 - HMPREF1058_RS02080 0.67 -2.9
294,877 + HMPREF1058_RS02080 0.71 -2.3
294,926 - +0.3
295,061 - HMPREF1058_RS02080 0.84 -1.2
295,094 - HMPREF1058_RS02080 0.87 -3.5
295,097 - HMPREF1058_RS02080 0.87 -2.3
295,097 - HMPREF1058_RS02080 0.87 -2.3
295,184 + -1.5
295,233 + -3.6
295,240 - -2.0
295,255 - -1.5
295,290 + -0.7
295,332 + -2.2
295,333 - -1.7
295,366 - +0.3
295,436 + HMPREF1058_RS02075 0.14 -1.7
295,446 - HMPREF1058_RS02075 0.15 -1.9
295,453 + HMPREF1058_RS02075 0.16 -2.9
295,455 + HMPREF1058_RS02075 0.16 -2.9
295,521 + HMPREF1058_RS02075 0.22 -1.6
295,547 + HMPREF1058_RS02075 0.25 -2.3
295,639 - HMPREF1058_RS02075 0.34 -2.0
295,710 - HMPREF1058_RS02075 0.41 +0.7
295,723 + HMPREF1058_RS02075 0.42 -2.8
295,724 - HMPREF1058_RS02075 0.42 -3.1
295,743 + HMPREF1058_RS02075 0.44 -0.8
295,806 - HMPREF1058_RS02075 0.50 -4.8
295,886 - HMPREF1058_RS02075 0.58 -0.4
295,908 + HMPREF1058_RS02075 0.60 -2.2
295,936 + HMPREF1058_RS02075 0.63 -1.1
295,936 + HMPREF1058_RS02075 0.63 -3.1
296,001 + HMPREF1058_RS02075 0.69 -2.1
296,018 + HMPREF1058_RS02075 0.71 -1.2
296,153 + HMPREF1058_RS02075 0.84 -1.1
296,154 - HMPREF1058_RS02075 0.84 -1.0
296,221 + -0.3
296,332 + -0.4
296,333 - -1.2
296,346 + -2.4
296,354 + +1.2
296,354 + -0.7
296,355 - -3.3
296,355 - -2.5
296,355 - -1.2
296,356 + -0.8
296,441 + -1.3
296,517 + -0.9
296,536 - -3.8
296,631 + -1.7
296,632 - -2.1
296,632 - -0.1
296,635 - -2.2
296,635 - -1.4
296,656 - -0.5
296,690 - -3.8
296,781 + HMPREF1058_RS02070 0.12 -4.3
296,852 - HMPREF1058_RS02070 0.14 -1.7
296,858 + HMPREF1058_RS02070 0.15 -6.0
296,869 - HMPREF1058_RS02070 0.15 -1.8
296,874 - HMPREF1058_RS02070 0.15 -3.3
296,946 + HMPREF1058_RS02070 0.17 -1.4
296,951 - HMPREF1058_RS02070 0.18 -3.2
296,951 - HMPREF1058_RS02070 0.18 -0.2
296,977 + HMPREF1058_RS02070 0.18 -3.0
297,024 + HMPREF1058_RS02070 0.20 -2.6
297,030 + HMPREF1058_RS02070 0.20 -3.2
297,031 - HMPREF1058_RS02070 0.20 +0.4
297,063 + HMPREF1058_RS02070 0.21 -1.1
297,063 + HMPREF1058_RS02070 0.21 -1.9
297,063 + HMPREF1058_RS02070 0.21 -3.4
297,063 + HMPREF1058_RS02070 0.21 -1.1
297,064 - HMPREF1058_RS02070 0.21 -1.3
297,064 - HMPREF1058_RS02070 0.21 -2.4
297,068 - HMPREF1058_RS02070 0.21 -1.5
297,122 + HMPREF1058_RS02070 0.23 -2.9
297,122 + HMPREF1058_RS02070 0.23 -1.7
297,151 + HMPREF1058_RS02070 0.24 -2.5
297,209 - HMPREF1058_RS02070 0.26 -1.6
297,211 - HMPREF1058_RS02070 0.26 -1.6
297,242 + HMPREF1058_RS02070 0.27 -2.4
297,242 + HMPREF1058_RS02070 0.27 -2.3
297,288 - HMPREF1058_RS02070 0.28 -2.0
297,303 + HMPREF1058_RS02070 0.29 -2.3
297,304 - HMPREF1058_RS02070 0.29 -1.7

Or see this region's nucleotide sequence