Experiment: D-Mannose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS01790 and HMPREF1058_RS01785 overlap by 18 nucleotides HMPREF1058_RS01785 and HMPREF1058_RS01780 are separated by 198 nucleotides HMPREF1058_RS01780 and HMPREF1058_RS01775 are separated by 33 nucleotides
HMPREF1058_RS01790: HMPREF1058_RS01790 - mannonate dehydratase, at 41,191 to 42,369
_RS01790
HMPREF1058_RS01785: HMPREF1058_RS01785 - patatin-like phospholipase family protein, at 42,352 to 44,571
_RS01785
HMPREF1058_RS01780: HMPREF1058_RS01780 - 3'-5' exonuclease, at 44,770 to 45,258
_RS01780
HMPREF1058_RS01775: HMPREF1058_RS01775 - YigZ family protein, at 45,292 to 45,894
_RS01775
Position (kb) 42
43
44
45 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 41.450 kb on + strand, within HMPREF1058_RS01790 at 41.489 kb on + strand, within HMPREF1058_RS01790 at 41.495 kb on - strand, within HMPREF1058_RS01790 at 41.496 kb on + strand, within HMPREF1058_RS01790 at 41.604 kb on + strand, within HMPREF1058_RS01790 at 41.639 kb on - strand, within HMPREF1058_RS01790 at 41.683 kb on - strand, within HMPREF1058_RS01790 at 41.721 kb on + strand, within HMPREF1058_RS01790 at 41.721 kb on + strand, within HMPREF1058_RS01790 at 41.722 kb on - strand, within HMPREF1058_RS01790 at 41.723 kb on + strand, within HMPREF1058_RS01790 at 41.745 kb on - strand, within HMPREF1058_RS01790 at 41.756 kb on + strand, within HMPREF1058_RS01790 at 41.757 kb on - strand, within HMPREF1058_RS01790 at 41.786 kb on + strand, within HMPREF1058_RS01790 at 41.809 kb on + strand, within HMPREF1058_RS01790 at 41.810 kb on - strand, within HMPREF1058_RS01790 at 41.888 kb on - strand, within HMPREF1058_RS01790 at 41.894 kb on + strand, within HMPREF1058_RS01790 at 41.895 kb on - strand, within HMPREF1058_RS01790 at 41.895 kb on - strand, within HMPREF1058_RS01790 at 41.898 kb on + strand, within HMPREF1058_RS01790 at 41.898 kb on + strand, within HMPREF1058_RS01790 at 41.898 kb on + strand, within HMPREF1058_RS01790 at 42.060 kb on - strand, within HMPREF1058_RS01790 at 42.076 kb on - strand, within HMPREF1058_RS01790 at 42.101 kb on + strand, within HMPREF1058_RS01790 at 42.101 kb on + strand, within HMPREF1058_RS01790 at 42.320 kb on + strand at 42.321 kb on - strand at 42.378 kb on - strand at 42.381 kb on + strand at 42.381 kb on + strand at 42.382 kb on - strand at 42.408 kb on - strand at 42.438 kb on + strand at 42.457 kb on + strand at 42.458 kb on - strand at 42.478 kb on - strand at 42.521 kb on + strand at 42.522 kb on - strand at 42.700 kb on - strand, within HMPREF1058_RS01785 at 42.836 kb on + strand, within HMPREF1058_RS01785 at 42.836 kb on + strand, within HMPREF1058_RS01785 at 42.974 kb on - strand, within HMPREF1058_RS01785 at 42.993 kb on - strand, within HMPREF1058_RS01785 at 42.994 kb on + strand, within HMPREF1058_RS01785 at 42.995 kb on - strand, within HMPREF1058_RS01785 at 43.087 kb on - strand, within HMPREF1058_RS01785 at 43.120 kb on - strand, within HMPREF1058_RS01785 at 43.138 kb on - strand, within HMPREF1058_RS01785 at 43.139 kb on + strand, within HMPREF1058_RS01785 at 43.139 kb on + strand, within HMPREF1058_RS01785 at 43.140 kb on - strand, within HMPREF1058_RS01785 at 43.233 kb on + strand, within HMPREF1058_RS01785 at 43.282 kb on - strand, within HMPREF1058_RS01785 at 43.312 kb on + strand, within HMPREF1058_RS01785 at 43.359 kb on + strand, within HMPREF1058_RS01785 at 43.392 kb on - strand, within HMPREF1058_RS01785 at 43.392 kb on - strand, within HMPREF1058_RS01785 at 43.423 kb on + strand, within HMPREF1058_RS01785 at 43.426 kb on + strand, within HMPREF1058_RS01785 at 43.427 kb on - strand, within HMPREF1058_RS01785 at 43.460 kb on - strand, within HMPREF1058_RS01785 at 43.544 kb on - strand, within HMPREF1058_RS01785 at 43.544 kb on - strand, within HMPREF1058_RS01785 at 43.598 kb on + strand, within HMPREF1058_RS01785 at 43.598 kb on + strand, within HMPREF1058_RS01785 at 43.598 kb on + strand, within HMPREF1058_RS01785 at 43.598 kb on + strand, within HMPREF1058_RS01785 at 43.598 kb on + strand, within HMPREF1058_RS01785 at 43.599 kb on - strand, within HMPREF1058_RS01785 at 43.599 kb on - strand, within HMPREF1058_RS01785 at 43.599 kb on - strand, within HMPREF1058_RS01785 at 43.599 kb on - strand, within HMPREF1058_RS01785 at 43.602 kb on + strand, within HMPREF1058_RS01785 at 43.721 kb on + strand, within HMPREF1058_RS01785 at 43.741 kb on + strand, within HMPREF1058_RS01785 at 43.744 kb on - strand, within HMPREF1058_RS01785 at 43.745 kb on + strand, within HMPREF1058_RS01785 at 43.745 kb on + strand, within HMPREF1058_RS01785 at 43.746 kb on - strand, within HMPREF1058_RS01785 at 43.746 kb on - strand, within HMPREF1058_RS01785 at 43.746 kb on - strand, within HMPREF1058_RS01785 at 43.816 kb on - strand, within HMPREF1058_RS01785 at 43.873 kb on + strand, within HMPREF1058_RS01785 at 43.874 kb on - strand, within HMPREF1058_RS01785 at 43.903 kb on + strand, within HMPREF1058_RS01785 at 43.910 kb on - strand, within HMPREF1058_RS01785 at 43.910 kb on - strand, within HMPREF1058_RS01785 at 43.950 kb on + strand, within HMPREF1058_RS01785 at 43.951 kb on - strand, within HMPREF1058_RS01785 at 44.247 kb on + strand, within HMPREF1058_RS01785 at 44.267 kb on - strand, within HMPREF1058_RS01785 at 44.331 kb on + strand, within HMPREF1058_RS01785 at 44.359 kb on - strand at 44.431 kb on + strand at 44.432 kb on - strand at 44.432 kb on - strand at 44.433 kb on + strand at 44.433 kb on + strand at 44.433 kb on + strand at 44.434 kb on - strand at 44.434 kb on - strand at 44.520 kb on + strand at 44.580 kb on - strand at 44.580 kb on - strand at 44.657 kb on + strand at 44.658 kb on - strand at 44.658 kb on - strand at 44.661 kb on + strand at 44.725 kb on - strand at 44.817 kb on + strand at 44.818 kb on - strand at 44.825 kb on + strand, within HMPREF1058_RS01780 at 44.829 kb on + strand, within HMPREF1058_RS01780 at 44.829 kb on + strand, within HMPREF1058_RS01780 at 44.879 kb on - strand, within HMPREF1058_RS01780 at 44.908 kb on + strand at 44.909 kb on - strand, within HMPREF1058_RS01780 at 44.909 kb on - strand, within HMPREF1058_RS01780 at 44.929 kb on - strand, within HMPREF1058_RS01780 at 44.981 kb on + strand, within HMPREF1058_RS01780 at 45.031 kb on - strand, within HMPREF1058_RS01780 at 45.076 kb on + strand, within HMPREF1058_RS01780 at 45.076 kb on + strand, within HMPREF1058_RS01780 at 45.159 kb on - strand, within HMPREF1058_RS01780 at 45.162 kb on + strand, within HMPREF1058_RS01780 at 45.296 kb on + strand at 45.306 kb on + strand at 45.307 kb on - strand at 45.341 kb on + strand at 45.342 kb on - strand at 45.344 kb on - strand at 45.344 kb on - strand at 45.346 kb on - strand at 45.367 kb on - strand, within HMPREF1058_RS01775 at 45.373 kb on - strand, within HMPREF1058_RS01775 at 45.373 kb on - strand, within HMPREF1058_RS01775 at 45.395 kb on + strand, within HMPREF1058_RS01775 at 45.404 kb on + strand, within HMPREF1058_RS01775 at 45.437 kb on - strand, within HMPREF1058_RS01775 at 45.439 kb on + strand, within HMPREF1058_RS01775 at 45.460 kb on + strand, within HMPREF1058_RS01775 at 45.466 kb on + strand, within HMPREF1058_RS01775 at 45.466 kb on + strand, within HMPREF1058_RS01775 at 45.469 kb on - strand, within HMPREF1058_RS01775 at 45.469 kb on - strand, within HMPREF1058_RS01775
Per-strain Table
Position Strand Gene LocusTag Fraction D-Mannose 10 mM (C) remove 41,450 + HMPREF1058_RS01790 0.22 -2.2 41,489 + HMPREF1058_RS01790 0.25 -0.8 41,495 - HMPREF1058_RS01790 0.26 -0.4 41,496 + HMPREF1058_RS01790 0.26 -0.3 41,604 + HMPREF1058_RS01790 0.35 +0.3 41,639 - HMPREF1058_RS01790 0.38 -0.3 41,683 - HMPREF1058_RS01790 0.42 -0.9 41,721 + HMPREF1058_RS01790 0.45 +0.0 41,721 + HMPREF1058_RS01790 0.45 -1.3 41,722 - HMPREF1058_RS01790 0.45 +0.1 41,723 + HMPREF1058_RS01790 0.45 -1.7 41,745 - HMPREF1058_RS01790 0.47 -1.0 41,756 + HMPREF1058_RS01790 0.48 -3.4 41,757 - HMPREF1058_RS01790 0.48 -0.2 41,786 + HMPREF1058_RS01790 0.50 -3.5 41,809 + HMPREF1058_RS01790 0.52 -1.7 41,810 - HMPREF1058_RS01790 0.53 +0.3 41,888 - HMPREF1058_RS01790 0.59 -0.3 41,894 + HMPREF1058_RS01790 0.60 -0.3 41,895 - HMPREF1058_RS01790 0.60 +0.2 41,895 - HMPREF1058_RS01790 0.60 -0.6 41,898 + HMPREF1058_RS01790 0.60 -0.0 41,898 + HMPREF1058_RS01790 0.60 -1.9 41,898 + HMPREF1058_RS01790 0.60 +1.2 42,060 - HMPREF1058_RS01790 0.74 +0.2 42,076 - HMPREF1058_RS01790 0.75 -1.3 42,101 + HMPREF1058_RS01790 0.77 -2.0 42,101 + HMPREF1058_RS01790 0.77 -1.2 42,320 + +0.5 42,321 - -1.2 42,378 - -2.8 42,381 + -1.9 42,381 + -1.3 42,382 - -2.4 42,408 - +0.9 42,438 + -1.2 42,457 + -0.0 42,458 - -0.7 42,478 - -1.1 42,521 + -0.8 42,522 - -0.5 42,700 - HMPREF1058_RS01785 0.16 -0.1 42,836 + HMPREF1058_RS01785 0.22 -1.0 42,836 + HMPREF1058_RS01785 0.22 -0.2 42,974 - HMPREF1058_RS01785 0.28 -2.4 42,993 - HMPREF1058_RS01785 0.29 -0.7 42,994 + HMPREF1058_RS01785 0.29 -0.3 42,995 - HMPREF1058_RS01785 0.29 -3.0 43,087 - HMPREF1058_RS01785 0.33 -3.0 43,120 - HMPREF1058_RS01785 0.35 -0.9 43,138 - HMPREF1058_RS01785 0.35 -1.9 43,139 + HMPREF1058_RS01785 0.35 -0.6 43,139 + HMPREF1058_RS01785 0.35 -1.7 43,140 - HMPREF1058_RS01785 0.35 -1.4 43,233 + HMPREF1058_RS01785 0.40 +0.2 43,282 - HMPREF1058_RS01785 0.42 -1.5 43,312 + HMPREF1058_RS01785 0.43 -0.4 43,359 + HMPREF1058_RS01785 0.45 -2.8 43,392 - HMPREF1058_RS01785 0.47 -0.7 43,392 - HMPREF1058_RS01785 0.47 -0.9 43,423 + HMPREF1058_RS01785 0.48 -1.1 43,426 + HMPREF1058_RS01785 0.48 -1.4 43,427 - HMPREF1058_RS01785 0.48 -0.3 43,460 - HMPREF1058_RS01785 0.50 -1.1 43,544 - HMPREF1058_RS01785 0.54 -1.6 43,544 - HMPREF1058_RS01785 0.54 -0.3 43,598 + HMPREF1058_RS01785 0.56 -0.5 43,598 + HMPREF1058_RS01785 0.56 -1.4 43,598 + HMPREF1058_RS01785 0.56 -2.1 43,598 + HMPREF1058_RS01785 0.56 -1.5 43,598 + HMPREF1058_RS01785 0.56 -1.8 43,599 - HMPREF1058_RS01785 0.56 -0.7 43,599 - HMPREF1058_RS01785 0.56 -1.7 43,599 - HMPREF1058_RS01785 0.56 -1.4 43,599 - HMPREF1058_RS01785 0.56 -1.4 43,602 + HMPREF1058_RS01785 0.56 +0.3 43,721 + HMPREF1058_RS01785 0.62 -1.6 43,741 + HMPREF1058_RS01785 0.63 -1.0 43,744 - HMPREF1058_RS01785 0.63 -0.7 43,745 + HMPREF1058_RS01785 0.63 -1.6 43,745 + HMPREF1058_RS01785 0.63 -2.8 43,746 - HMPREF1058_RS01785 0.63 -2.2 43,746 - HMPREF1058_RS01785 0.63 -1.1 43,746 - HMPREF1058_RS01785 0.63 -0.5 43,816 - HMPREF1058_RS01785 0.66 -1.5 43,873 + HMPREF1058_RS01785 0.69 -2.2 43,874 - HMPREF1058_RS01785 0.69 +0.5 43,903 + HMPREF1058_RS01785 0.70 +0.6 43,910 - HMPREF1058_RS01785 0.70 -1.9 43,910 - HMPREF1058_RS01785 0.70 -1.5 43,950 + HMPREF1058_RS01785 0.72 -1.1 43,951 - HMPREF1058_RS01785 0.72 -0.8 44,247 + HMPREF1058_RS01785 0.85 -1.4 44,267 - HMPREF1058_RS01785 0.86 -2.4 44,331 + HMPREF1058_RS01785 0.89 -0.2 44,359 - -1.3 44,431 + -0.5 44,432 - -0.9 44,432 - +0.2 44,433 + -0.0 44,433 + -2.5 44,433 + -0.6 44,434 - -0.6 44,434 - +0.3 44,520 + -1.0 44,580 - +1.5 44,580 - -0.5 44,657 + -0.7 44,658 - +0.8 44,658 - +3.1 44,661 + -1.4 44,725 - +1.5 44,817 + -1.4 44,818 - +1.6 44,825 + HMPREF1058_RS01780 0.11 +0.5 44,829 + HMPREF1058_RS01780 0.12 +0.7 44,829 + HMPREF1058_RS01780 0.12 -1.5 44,879 - HMPREF1058_RS01780 0.22 -2.0 44,908 + -2.5 44,909 - HMPREF1058_RS01780 0.28 -0.2 44,909 - HMPREF1058_RS01780 0.28 -1.7 44,929 - HMPREF1058_RS01780 0.33 +0.4 44,981 + HMPREF1058_RS01780 0.43 -0.6 45,031 - HMPREF1058_RS01780 0.53 -1.1 45,076 + HMPREF1058_RS01780 0.63 -1.0 45,076 + HMPREF1058_RS01780 0.63 +0.2 45,159 - HMPREF1058_RS01780 0.80 -0.1 45,162 + HMPREF1058_RS01780 0.80 -2.1 45,296 + -1.5 45,306 + -1.3 45,307 - +1.0 45,341 + -0.8 45,342 - -0.2 45,344 - +0.6 45,344 - -0.0 45,346 - +0.1 45,367 - HMPREF1058_RS01775 0.12 -3.0 45,373 - HMPREF1058_RS01775 0.13 -0.4 45,373 - HMPREF1058_RS01775 0.13 -0.9 45,395 + HMPREF1058_RS01775 0.17 -1.3 45,404 + HMPREF1058_RS01775 0.19 -0.2 45,437 - HMPREF1058_RS01775 0.24 +2.0 45,439 + HMPREF1058_RS01775 0.24 +0.4 45,460 + HMPREF1058_RS01775 0.28 -0.8 45,466 + HMPREF1058_RS01775 0.29 -0.9 45,466 + HMPREF1058_RS01775 0.29 -2.0 45,469 - HMPREF1058_RS01775 0.29 +1.5 45,469 - HMPREF1058_RS01775 0.29 +0.1
Or see this region's nucleotide sequence