Strain Fitness in Methanococcus maripaludis S2 around MMP_RS04545

Experiment: McCas_formate_complete sulfate 125 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS04540 and MMP_RS04545 are separated by 13 nucleotidesMMP_RS04545 and MMP_RS04550 are separated by 452 nucleotides MMP_RS04540: MMP_RS04540 - tetratricopeptide repeat protein, at 864,944 to 866,647 _RS04540 MMP_RS04545: MMP_RS04545 - methyltransferase domain-containing protein, at 866,661 to 867,458 _RS04545 MMP_RS04550: MMP_RS04550 - S-layer protein, at 867,911 to 869,512 _RS04550 Position (kb) 866 867 868Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 865.719 kb on - strand, within MMP_RS04540at 865.720 kb on + strand, within MMP_RS04540at 865.726 kb on - strand, within MMP_RS04540at 865.726 kb on - strand, within MMP_RS04540at 865.814 kb on - strand, within MMP_RS04540at 865.815 kb on + strand, within MMP_RS04540at 865.833 kb on - strand, within MMP_RS04540at 865.834 kb on + strand, within MMP_RS04540at 865.992 kb on - strand, within MMP_RS04540at 866.014 kb on + strand, within MMP_RS04540at 866.021 kb on + strand, within MMP_RS04540at 866.061 kb on - strand, within MMP_RS04540at 866.061 kb on - strand, within MMP_RS04540at 866.065 kb on + strand, within MMP_RS04540at 866.155 kb on - strand, within MMP_RS04540at 866.378 kb on - strand, within MMP_RS04540at 866.384 kb on + strand, within MMP_RS04540at 866.417 kb on - strand, within MMP_RS04540at 866.417 kb on - strand, within MMP_RS04540at 866.438 kb on - strand, within MMP_RS04540at 866.482 kb on + strandat 866.482 kb on + strandat 866.483 kb on - strandat 866.483 kb on - strandat 866.484 kb on + strandat 866.501 kb on - strandat 866.501 kb on - strandat 866.502 kb on + strandat 866.502 kb on + strandat 866.502 kb on + strandat 866.502 kb on + strandat 866.502 kb on + strandat 866.502 kb on + strandat 866.512 kb on + strandat 866.519 kb on - strandat 866.520 kb on + strandat 866.559 kb on - strandat 866.559 kb on - strandat 866.609 kb on + strandat 866.609 kb on + strandat 866.609 kb on + strandat 866.653 kb on - strandat 866.658 kb on + strandat 866.662 kb on - strandat 866.738 kb on - strandat 866.742 kb on - strand, within MMP_RS04545at 866.757 kb on - strand, within MMP_RS04545at 866.758 kb on + strand, within MMP_RS04545at 866.787 kb on + strand, within MMP_RS04545at 866.791 kb on + strand, within MMP_RS04545at 866.796 kb on - strand, within MMP_RS04545at 866.884 kb on + strand, within MMP_RS04545at 866.888 kb on - strand, within MMP_RS04545at 866.889 kb on + strand, within MMP_RS04545at 866.899 kb on - strand, within MMP_RS04545at 866.899 kb on - strand, within MMP_RS04545at 866.899 kb on - strand, within MMP_RS04545at 866.899 kb on - strand, within MMP_RS04545at 866.901 kb on - strand, within MMP_RS04545at 866.901 kb on - strand, within MMP_RS04545at 866.902 kb on + strand, within MMP_RS04545at 866.914 kb on - strand, within MMP_RS04545at 866.916 kb on - strand, within MMP_RS04545at 866.916 kb on - strand, within MMP_RS04545at 866.916 kb on - strand, within MMP_RS04545at 866.916 kb on - strand, within MMP_RS04545at 866.917 kb on + strand, within MMP_RS04545at 866.917 kb on + strand, within MMP_RS04545at 866.917 kb on + strand, within MMP_RS04545at 866.917 kb on + strand, within MMP_RS04545at 866.919 kb on - strand, within MMP_RS04545at 866.919 kb on - strand, within MMP_RS04545at 866.920 kb on + strand, within MMP_RS04545at 866.920 kb on + strand, within MMP_RS04545at 866.920 kb on + strand, within MMP_RS04545at 866.920 kb on + strand, within MMP_RS04545at 866.920 kb on + strand, within MMP_RS04545at 866.920 kb on + strand, within MMP_RS04545at 866.920 kb on + strand, within MMP_RS04545at 866.925 kb on + strand, within MMP_RS04545at 866.926 kb on - strand, within MMP_RS04545at 866.926 kb on - strand, within MMP_RS04545at 866.926 kb on - strand, within MMP_RS04545at 866.938 kb on - strand, within MMP_RS04545at 866.938 kb on - strand, within MMP_RS04545at 866.938 kb on - strand, within MMP_RS04545at 866.939 kb on + strand, within MMP_RS04545at 866.939 kb on + strand, within MMP_RS04545at 866.997 kb on + strand, within MMP_RS04545at 866.997 kb on + strand, within MMP_RS04545at 866.999 kb on - strand, within MMP_RS04545at 867.000 kb on + strand, within MMP_RS04545at 867.000 kb on + strand, within MMP_RS04545at 867.000 kb on + strand, within MMP_RS04545at 867.001 kb on - strand, within MMP_RS04545at 867.001 kb on - strand, within MMP_RS04545at 867.001 kb on - strand, within MMP_RS04545at 867.001 kb on - strand, within MMP_RS04545at 867.001 kb on - strand, within MMP_RS04545at 867.002 kb on + strand, within MMP_RS04545at 867.002 kb on + strand, within MMP_RS04545at 867.002 kb on + strand, within MMP_RS04545at 867.002 kb on + strand, within MMP_RS04545at 867.002 kb on + strand, within MMP_RS04545at 867.002 kb on + strand, within MMP_RS04545at 867.002 kb on + strand, within MMP_RS04545at 867.003 kb on - strand, within MMP_RS04545at 867.003 kb on - strand, within MMP_RS04545at 867.003 kb on - strand, within MMP_RS04545at 867.004 kb on + strand, within MMP_RS04545at 867.004 kb on + strand, within MMP_RS04545at 867.004 kb on + strand, within MMP_RS04545at 867.004 kb on + strand, within MMP_RS04545at 867.036 kb on - strand, within MMP_RS04545at 867.042 kb on + strand, within MMP_RS04545at 867.061 kb on - strand, within MMP_RS04545at 867.062 kb on + strand, within MMP_RS04545at 867.062 kb on + strand, within MMP_RS04545at 867.100 kb on + strand, within MMP_RS04545at 867.100 kb on + strand, within MMP_RS04545at 867.124 kb on + strand, within MMP_RS04545at 867.137 kb on - strand, within MMP_RS04545at 867.140 kb on - strand, within MMP_RS04545at 867.141 kb on + strand, within MMP_RS04545at 867.150 kb on - strand, within MMP_RS04545at 867.150 kb on - strand, within MMP_RS04545at 867.156 kb on + strand, within MMP_RS04545at 867.180 kb on - strand, within MMP_RS04545at 867.181 kb on + strand, within MMP_RS04545at 867.181 kb on + strand, within MMP_RS04545at 867.182 kb on - strand, within MMP_RS04545at 867.182 kb on - strand, within MMP_RS04545at 867.183 kb on + strand, within MMP_RS04545at 867.186 kb on - strand, within MMP_RS04545at 867.186 kb on - strand, within MMP_RS04545at 867.186 kb on - strand, within MMP_RS04545at 867.186 kb on - strand, within MMP_RS04545at 867.187 kb on + strand, within MMP_RS04545at 867.187 kb on + strand, within MMP_RS04545at 867.187 kb on + strand, within MMP_RS04545at 867.187 kb on + strand, within MMP_RS04545at 867.261 kb on + strand, within MMP_RS04545at 867.269 kb on - strand, within MMP_RS04545at 867.326 kb on - strand, within MMP_RS04545at 867.326 kb on - strand, within MMP_RS04545at 867.326 kb on - strand, within MMP_RS04545at 867.326 kb on - strand, within MMP_RS04545at 867.364 kb on - strand, within MMP_RS04545at 867.365 kb on + strand, within MMP_RS04545at 867.555 kb on + strandat 867.555 kb on + strandat 867.568 kb on - strandat 867.684 kb on - strandat 867.733 kb on - strandat 867.733 kb on - strandat 867.733 kb on - strandat 867.734 kb on + strandat 867.734 kb on + strandat 867.737 kb on - strandat 867.738 kb on + strandat 867.738 kb on + strandat 867.743 kb on - strandat 867.743 kb on - strandat 867.744 kb on + strandat 867.744 kb on + strandat 867.747 kb on - strandat 867.748 kb on + strandat 867.879 kb on + strandat 867.897 kb on + strandat 867.897 kb on + strandat 867.909 kb on + strandat 867.919 kb on - strandat 867.923 kb on + strandat 868.014 kb on - strandat 868.014 kb on - strandat 868.057 kb on - strandat 868.057 kb on - strandat 868.067 kb on + strandat 868.146 kb on - strand, within MMP_RS04550at 868.198 kb on - strand, within MMP_RS04550at 868.218 kb on - strand, within MMP_RS04550at 868.272 kb on + strand, within MMP_RS04550at 868.272 kb on + strand, within MMP_RS04550at 868.276 kb on + strand, within MMP_RS04550at 868.276 kb on + strand, within MMP_RS04550at 868.279 kb on - strand, within MMP_RS04550at 868.280 kb on + strand, within MMP_RS04550at 868.280 kb on + strand, within MMP_RS04550at 868.303 kb on - strand, within MMP_RS04550

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Per-strain Table

Position Strand Gene LocusTag Fraction McCas_formate_complete sulfate 125 mM
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865,719 - MMP_RS04540 0.45 -1.4
865,720 + MMP_RS04540 0.46 -0.8
865,726 - MMP_RS04540 0.46 +1.1
865,726 - MMP_RS04540 0.46 -1.0
865,814 - MMP_RS04540 0.51 +0.1
865,815 + MMP_RS04540 0.51 -2.2
865,833 - MMP_RS04540 0.52 +0.3
865,834 + MMP_RS04540 0.52 +2.1
865,992 - MMP_RS04540 0.62 -0.2
866,014 + MMP_RS04540 0.63 -0.3
866,021 + MMP_RS04540 0.63 -0.0
866,061 - MMP_RS04540 0.66 -2.2
866,061 - MMP_RS04540 0.66 +0.9
866,065 + MMP_RS04540 0.66 -3.1
866,155 - MMP_RS04540 0.71 +1.7
866,378 - MMP_RS04540 0.84 +1.2
866,384 + MMP_RS04540 0.85 +1.1
866,417 - MMP_RS04540 0.86 +0.7
866,417 - MMP_RS04540 0.86 -0.5
866,438 - MMP_RS04540 0.88 -0.4
866,482 + +1.2
866,482 + -1.6
866,483 - -0.1
866,483 - +1.1
866,484 + -0.3
866,501 - +0.1
866,501 - +0.5
866,502 + +0.9
866,502 + +1.2
866,502 + -0.0
866,502 + +1.4
866,502 + +0.1
866,502 + -0.5
866,512 + +1.6
866,519 - -1.3
866,520 + +0.1
866,559 - -0.9
866,559 - +2.2
866,609 + +1.8
866,609 + +1.0
866,609 + +1.6
866,653 - -1.2
866,658 + +0.5
866,662 - +0.4
866,738 - +1.4
866,742 - MMP_RS04545 0.10 +1.5
866,757 - MMP_RS04545 0.12 -0.4
866,758 + MMP_RS04545 0.12 -0.0
866,787 + MMP_RS04545 0.16 -0.5
866,791 + MMP_RS04545 0.16 -2.4
866,796 - MMP_RS04545 0.17 -1.2
866,884 + MMP_RS04545 0.28 +0.9
866,888 - MMP_RS04545 0.28 -0.8
866,889 + MMP_RS04545 0.29 +0.4
866,899 - MMP_RS04545 0.30 -1.0
866,899 - MMP_RS04545 0.30 -0.3
866,899 - MMP_RS04545 0.30 -1.4
866,899 - MMP_RS04545 0.30 +0.3
866,901 - MMP_RS04545 0.30 +2.5
866,901 - MMP_RS04545 0.30 -0.2
866,902 + MMP_RS04545 0.30 +0.5
866,914 - MMP_RS04545 0.32 -0.2
866,916 - MMP_RS04545 0.32 -0.3
866,916 - MMP_RS04545 0.32 +0.8
866,916 - MMP_RS04545 0.32 -1.2
866,916 - MMP_RS04545 0.32 -1.2
866,917 + MMP_RS04545 0.32 -1.7
866,917 + MMP_RS04545 0.32 +1.0
866,917 + MMP_RS04545 0.32 -0.3
866,917 + MMP_RS04545 0.32 -1.8
866,919 - MMP_RS04545 0.32 -1.8
866,919 - MMP_RS04545 0.32 -1.7
866,920 + MMP_RS04545 0.32 +0.7
866,920 + MMP_RS04545 0.32 -0.1
866,920 + MMP_RS04545 0.32 -0.2
866,920 + MMP_RS04545 0.32 +0.4
866,920 + MMP_RS04545 0.32 +1.3
866,920 + MMP_RS04545 0.32 +0.0
866,920 + MMP_RS04545 0.32 -0.4
866,925 + MMP_RS04545 0.33 +0.8
866,926 - MMP_RS04545 0.33 +1.2
866,926 - MMP_RS04545 0.33 -2.1
866,926 - MMP_RS04545 0.33 -0.5
866,938 - MMP_RS04545 0.35 +0.7
866,938 - MMP_RS04545 0.35 -0.7
866,938 - MMP_RS04545 0.35 +1.2
866,939 + MMP_RS04545 0.35 -0.8
866,939 + MMP_RS04545 0.35 +1.1
866,997 + MMP_RS04545 0.42 +0.6
866,997 + MMP_RS04545 0.42 +1.0
866,999 - MMP_RS04545 0.42 -0.8
867,000 + MMP_RS04545 0.42 +0.5
867,000 + MMP_RS04545 0.42 +0.5
867,000 + MMP_RS04545 0.42 +1.6
867,001 - MMP_RS04545 0.43 -1.0
867,001 - MMP_RS04545 0.43 +1.1
867,001 - MMP_RS04545 0.43 -0.6
867,001 - MMP_RS04545 0.43 -0.7
867,001 - MMP_RS04545 0.43 -1.8
867,002 + MMP_RS04545 0.43 +1.3
867,002 + MMP_RS04545 0.43 -0.1
867,002 + MMP_RS04545 0.43 +0.4
867,002 + MMP_RS04545 0.43 -1.4
867,002 + MMP_RS04545 0.43 -2.1
867,002 + MMP_RS04545 0.43 -0.2
867,002 + MMP_RS04545 0.43 +0.5
867,003 - MMP_RS04545 0.43 -0.6
867,003 - MMP_RS04545 0.43 +0.3
867,003 - MMP_RS04545 0.43 +0.6
867,004 + MMP_RS04545 0.43 -0.1
867,004 + MMP_RS04545 0.43 -1.2
867,004 + MMP_RS04545 0.43 -2.6
867,004 + MMP_RS04545 0.43 -0.8
867,036 - MMP_RS04545 0.47 -1.5
867,042 + MMP_RS04545 0.48 -0.9
867,061 - MMP_RS04545 0.50 +0.3
867,062 + MMP_RS04545 0.50 +0.7
867,062 + MMP_RS04545 0.50 -0.1
867,100 + MMP_RS04545 0.55 +0.8
867,100 + MMP_RS04545 0.55 +0.4
867,124 + MMP_RS04545 0.58 +0.4
867,137 - MMP_RS04545 0.60 -1.0
867,140 - MMP_RS04545 0.60 -1.5
867,141 + MMP_RS04545 0.60 +0.1
867,150 - MMP_RS04545 0.61 -1.0
867,150 - MMP_RS04545 0.61 +0.7
867,156 + MMP_RS04545 0.62 -2.3
867,180 - MMP_RS04545 0.65 -0.0
867,181 + MMP_RS04545 0.65 +0.9
867,181 + MMP_RS04545 0.65 -4.7
867,182 - MMP_RS04545 0.65 -0.2
867,182 - MMP_RS04545 0.65 +0.2
867,183 + MMP_RS04545 0.65 -1.5
867,186 - MMP_RS04545 0.66 -0.6
867,186 - MMP_RS04545 0.66 +1.4
867,186 - MMP_RS04545 0.66 -0.9
867,186 - MMP_RS04545 0.66 +2.5
867,187 + MMP_RS04545 0.66 -1.3
867,187 + MMP_RS04545 0.66 +0.9
867,187 + MMP_RS04545 0.66 -1.2
867,187 + MMP_RS04545 0.66 +1.1
867,261 + MMP_RS04545 0.75 -1.0
867,269 - MMP_RS04545 0.76 -3.2
867,326 - MMP_RS04545 0.83 +0.4
867,326 - MMP_RS04545 0.83 +1.3
867,326 - MMP_RS04545 0.83 -2.2
867,326 - MMP_RS04545 0.83 -0.8
867,364 - MMP_RS04545 0.88 +0.4
867,365 + MMP_RS04545 0.88 +1.4
867,555 + +1.2
867,555 + +1.0
867,568 - +0.5
867,684 - +1.2
867,733 - +2.7
867,733 - -0.8
867,733 - +0.3
867,734 + -0.6
867,734 + -0.0
867,737 - +0.1
867,738 + -0.8
867,738 + -1.9
867,743 - +0.0
867,743 - +0.2
867,744 + +0.1
867,744 + +0.2
867,747 - +1.1
867,748 + +1.6
867,879 + +1.4
867,897 + -1.3
867,897 + +0.9
867,909 + -0.0
867,919 - +0.5
867,923 + +1.7
868,014 - -0.9
868,014 - +0.1
868,057 - -0.8
868,057 - +1.1
868,067 + +0.8
868,146 - MMP_RS04550 0.15 -0.7
868,198 - MMP_RS04550 0.18 +0.8
868,218 - MMP_RS04550 0.19 -2.2
868,272 + MMP_RS04550 0.23 -0.3
868,272 + MMP_RS04550 0.23 -3.7
868,276 + MMP_RS04550 0.23 +0.1
868,276 + MMP_RS04550 0.23 +0.5
868,279 - MMP_RS04550 0.23 -1.3
868,280 + MMP_RS04550 0.23 -1.4
868,280 + MMP_RS04550 0.23 +0.1
868,303 - MMP_RS04550 0.24 +0.6

Or see this region's nucleotide sequence