Experiment: McCas_formate_complete sulfate 125 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS04540 and MMP_RS04545 are separated by 13 nucleotides MMP_RS04545 and MMP_RS04550 are separated by 452 nucleotides
MMP_RS04540: MMP_RS04540 - tetratricopeptide repeat protein, at 864,944 to 866,647
_RS04540
MMP_RS04545: MMP_RS04545 - methyltransferase domain-containing protein, at 866,661 to 867,458
_RS04545
MMP_RS04550: MMP_RS04550 - S-layer protein, at 867,911 to 869,512
_RS04550
Position (kb) 866
867
868 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 865.719 kb on - strand, within MMP_RS04540 at 865.720 kb on + strand, within MMP_RS04540 at 865.726 kb on - strand, within MMP_RS04540 at 865.726 kb on - strand, within MMP_RS04540 at 865.814 kb on - strand, within MMP_RS04540 at 865.815 kb on + strand, within MMP_RS04540 at 865.833 kb on - strand, within MMP_RS04540 at 865.834 kb on + strand, within MMP_RS04540 at 865.992 kb on - strand, within MMP_RS04540 at 866.014 kb on + strand, within MMP_RS04540 at 866.021 kb on + strand, within MMP_RS04540 at 866.061 kb on - strand, within MMP_RS04540 at 866.061 kb on - strand, within MMP_RS04540 at 866.065 kb on + strand, within MMP_RS04540 at 866.155 kb on - strand, within MMP_RS04540 at 866.378 kb on - strand, within MMP_RS04540 at 866.384 kb on + strand, within MMP_RS04540 at 866.417 kb on - strand, within MMP_RS04540 at 866.417 kb on - strand, within MMP_RS04540 at 866.438 kb on - strand, within MMP_RS04540 at 866.482 kb on + strand at 866.482 kb on + strand at 866.483 kb on - strand at 866.483 kb on - strand at 866.484 kb on + strand at 866.501 kb on - strand at 866.501 kb on - strand at 866.502 kb on + strand at 866.502 kb on + strand at 866.502 kb on + strand at 866.502 kb on + strand at 866.502 kb on + strand at 866.502 kb on + strand at 866.512 kb on + strand at 866.519 kb on - strand at 866.520 kb on + strand at 866.559 kb on - strand at 866.559 kb on - strand at 866.609 kb on + strand at 866.609 kb on + strand at 866.609 kb on + strand at 866.653 kb on - strand at 866.658 kb on + strand at 866.662 kb on - strand at 866.738 kb on - strand at 866.742 kb on - strand, within MMP_RS04545 at 866.757 kb on - strand, within MMP_RS04545 at 866.758 kb on + strand, within MMP_RS04545 at 866.787 kb on + strand, within MMP_RS04545 at 866.791 kb on + strand, within MMP_RS04545 at 866.796 kb on - strand, within MMP_RS04545 at 866.884 kb on + strand, within MMP_RS04545 at 866.888 kb on - strand, within MMP_RS04545 at 866.889 kb on + strand, within MMP_RS04545 at 866.899 kb on - strand, within MMP_RS04545 at 866.899 kb on - strand, within MMP_RS04545 at 866.899 kb on - strand, within MMP_RS04545 at 866.899 kb on - strand, within MMP_RS04545 at 866.901 kb on - strand, within MMP_RS04545 at 866.901 kb on - strand, within MMP_RS04545 at 866.902 kb on + strand, within MMP_RS04545 at 866.914 kb on - strand, within MMP_RS04545 at 866.916 kb on - strand, within MMP_RS04545 at 866.916 kb on - strand, within MMP_RS04545 at 866.916 kb on - strand, within MMP_RS04545 at 866.916 kb on - strand, within MMP_RS04545 at 866.917 kb on + strand, within MMP_RS04545 at 866.917 kb on + strand, within MMP_RS04545 at 866.917 kb on + strand, within MMP_RS04545 at 866.917 kb on + strand, within MMP_RS04545 at 866.919 kb on - strand, within MMP_RS04545 at 866.919 kb on - strand, within MMP_RS04545 at 866.920 kb on + strand, within MMP_RS04545 at 866.920 kb on + strand, within MMP_RS04545 at 866.920 kb on + strand, within MMP_RS04545 at 866.920 kb on + strand, within MMP_RS04545 at 866.920 kb on + strand, within MMP_RS04545 at 866.920 kb on + strand, within MMP_RS04545 at 866.920 kb on + strand, within MMP_RS04545 at 866.925 kb on + strand, within MMP_RS04545 at 866.926 kb on - strand, within MMP_RS04545 at 866.926 kb on - strand, within MMP_RS04545 at 866.926 kb on - strand, within MMP_RS04545 at 866.938 kb on - strand, within MMP_RS04545 at 866.938 kb on - strand, within MMP_RS04545 at 866.938 kb on - strand, within MMP_RS04545 at 866.939 kb on + strand, within MMP_RS04545 at 866.939 kb on + strand, within MMP_RS04545 at 866.997 kb on + strand, within MMP_RS04545 at 866.997 kb on + strand, within MMP_RS04545 at 866.999 kb on - strand, within MMP_RS04545 at 867.000 kb on + strand, within MMP_RS04545 at 867.000 kb on + strand, within MMP_RS04545 at 867.000 kb on + strand, within MMP_RS04545 at 867.001 kb on - strand, within MMP_RS04545 at 867.001 kb on - strand, within MMP_RS04545 at 867.001 kb on - strand, within MMP_RS04545 at 867.001 kb on - strand, within MMP_RS04545 at 867.001 kb on - strand, within MMP_RS04545 at 867.002 kb on + strand, within MMP_RS04545 at 867.002 kb on + strand, within MMP_RS04545 at 867.002 kb on + strand, within MMP_RS04545 at 867.002 kb on + strand, within MMP_RS04545 at 867.002 kb on + strand, within MMP_RS04545 at 867.002 kb on + strand, within MMP_RS04545 at 867.002 kb on + strand, within MMP_RS04545 at 867.003 kb on - strand, within MMP_RS04545 at 867.003 kb on - strand, within MMP_RS04545 at 867.003 kb on - strand, within MMP_RS04545 at 867.004 kb on + strand, within MMP_RS04545 at 867.004 kb on + strand, within MMP_RS04545 at 867.004 kb on + strand, within MMP_RS04545 at 867.004 kb on + strand, within MMP_RS04545 at 867.036 kb on - strand, within MMP_RS04545 at 867.042 kb on + strand, within MMP_RS04545 at 867.061 kb on - strand, within MMP_RS04545 at 867.062 kb on + strand, within MMP_RS04545 at 867.062 kb on + strand, within MMP_RS04545 at 867.100 kb on + strand, within MMP_RS04545 at 867.100 kb on + strand, within MMP_RS04545 at 867.124 kb on + strand, within MMP_RS04545 at 867.137 kb on - strand, within MMP_RS04545 at 867.140 kb on - strand, within MMP_RS04545 at 867.141 kb on + strand, within MMP_RS04545 at 867.150 kb on - strand, within MMP_RS04545 at 867.150 kb on - strand, within MMP_RS04545 at 867.156 kb on + strand, within MMP_RS04545 at 867.180 kb on - strand, within MMP_RS04545 at 867.181 kb on + strand, within MMP_RS04545 at 867.181 kb on + strand, within MMP_RS04545 at 867.182 kb on - strand, within MMP_RS04545 at 867.182 kb on - strand, within MMP_RS04545 at 867.183 kb on + strand, within MMP_RS04545 at 867.186 kb on - strand, within MMP_RS04545 at 867.186 kb on - strand, within MMP_RS04545 at 867.186 kb on - strand, within MMP_RS04545 at 867.186 kb on - strand, within MMP_RS04545 at 867.187 kb on + strand, within MMP_RS04545 at 867.187 kb on + strand, within MMP_RS04545 at 867.187 kb on + strand, within MMP_RS04545 at 867.187 kb on + strand, within MMP_RS04545 at 867.261 kb on + strand, within MMP_RS04545 at 867.269 kb on - strand, within MMP_RS04545 at 867.326 kb on - strand, within MMP_RS04545 at 867.326 kb on - strand, within MMP_RS04545 at 867.326 kb on - strand, within MMP_RS04545 at 867.326 kb on - strand, within MMP_RS04545 at 867.364 kb on - strand, within MMP_RS04545 at 867.365 kb on + strand, within MMP_RS04545 at 867.555 kb on + strand at 867.555 kb on + strand at 867.568 kb on - strand at 867.684 kb on - strand at 867.733 kb on - strand at 867.733 kb on - strand at 867.733 kb on - strand at 867.734 kb on + strand at 867.734 kb on + strand at 867.737 kb on - strand at 867.738 kb on + strand at 867.738 kb on + strand at 867.743 kb on - strand at 867.743 kb on - strand at 867.744 kb on + strand at 867.744 kb on + strand at 867.747 kb on - strand at 867.748 kb on + strand at 867.879 kb on + strand at 867.897 kb on + strand at 867.897 kb on + strand at 867.909 kb on + strand at 867.919 kb on - strand at 867.923 kb on + strand at 868.014 kb on - strand at 868.014 kb on - strand at 868.057 kb on - strand at 868.057 kb on - strand at 868.067 kb on + strand at 868.146 kb on - strand, within MMP_RS04550 at 868.198 kb on - strand, within MMP_RS04550 at 868.218 kb on - strand, within MMP_RS04550 at 868.272 kb on + strand, within MMP_RS04550 at 868.272 kb on + strand, within MMP_RS04550 at 868.276 kb on + strand, within MMP_RS04550 at 868.276 kb on + strand, within MMP_RS04550 at 868.279 kb on - strand, within MMP_RS04550 at 868.280 kb on + strand, within MMP_RS04550 at 868.280 kb on + strand, within MMP_RS04550 at 868.303 kb on - strand, within MMP_RS04550
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete sulfate 125 mM remove 865,719 - MMP_RS04540 0.45 -1.4 865,720 + MMP_RS04540 0.46 -0.8 865,726 - MMP_RS04540 0.46 +1.1 865,726 - MMP_RS04540 0.46 -1.0 865,814 - MMP_RS04540 0.51 +0.1 865,815 + MMP_RS04540 0.51 -2.2 865,833 - MMP_RS04540 0.52 +0.3 865,834 + MMP_RS04540 0.52 +2.1 865,992 - MMP_RS04540 0.62 -0.2 866,014 + MMP_RS04540 0.63 -0.3 866,021 + MMP_RS04540 0.63 -0.0 866,061 - MMP_RS04540 0.66 -2.2 866,061 - MMP_RS04540 0.66 +0.9 866,065 + MMP_RS04540 0.66 -3.1 866,155 - MMP_RS04540 0.71 +1.7 866,378 - MMP_RS04540 0.84 +1.2 866,384 + MMP_RS04540 0.85 +1.1 866,417 - MMP_RS04540 0.86 +0.7 866,417 - MMP_RS04540 0.86 -0.5 866,438 - MMP_RS04540 0.88 -0.4 866,482 + +1.2 866,482 + -1.6 866,483 - -0.1 866,483 - +1.1 866,484 + -0.3 866,501 - +0.1 866,501 - +0.5 866,502 + +0.9 866,502 + +1.2 866,502 + -0.0 866,502 + +1.4 866,502 + +0.1 866,502 + -0.5 866,512 + +1.6 866,519 - -1.3 866,520 + +0.1 866,559 - -0.9 866,559 - +2.2 866,609 + +1.8 866,609 + +1.0 866,609 + +1.6 866,653 - -1.2 866,658 + +0.5 866,662 - +0.4 866,738 - +1.4 866,742 - MMP_RS04545 0.10 +1.5 866,757 - MMP_RS04545 0.12 -0.4 866,758 + MMP_RS04545 0.12 -0.0 866,787 + MMP_RS04545 0.16 -0.5 866,791 + MMP_RS04545 0.16 -2.4 866,796 - MMP_RS04545 0.17 -1.2 866,884 + MMP_RS04545 0.28 +0.9 866,888 - MMP_RS04545 0.28 -0.8 866,889 + MMP_RS04545 0.29 +0.4 866,899 - MMP_RS04545 0.30 -1.0 866,899 - MMP_RS04545 0.30 -0.3 866,899 - MMP_RS04545 0.30 -1.4 866,899 - MMP_RS04545 0.30 +0.3 866,901 - MMP_RS04545 0.30 +2.5 866,901 - MMP_RS04545 0.30 -0.2 866,902 + MMP_RS04545 0.30 +0.5 866,914 - MMP_RS04545 0.32 -0.2 866,916 - MMP_RS04545 0.32 -0.3 866,916 - MMP_RS04545 0.32 +0.8 866,916 - MMP_RS04545 0.32 -1.2 866,916 - MMP_RS04545 0.32 -1.2 866,917 + MMP_RS04545 0.32 -1.7 866,917 + MMP_RS04545 0.32 +1.0 866,917 + MMP_RS04545 0.32 -0.3 866,917 + MMP_RS04545 0.32 -1.8 866,919 - MMP_RS04545 0.32 -1.8 866,919 - MMP_RS04545 0.32 -1.7 866,920 + MMP_RS04545 0.32 +0.7 866,920 + MMP_RS04545 0.32 -0.1 866,920 + MMP_RS04545 0.32 -0.2 866,920 + MMP_RS04545 0.32 +0.4 866,920 + MMP_RS04545 0.32 +1.3 866,920 + MMP_RS04545 0.32 +0.0 866,920 + MMP_RS04545 0.32 -0.4 866,925 + MMP_RS04545 0.33 +0.8 866,926 - MMP_RS04545 0.33 +1.2 866,926 - MMP_RS04545 0.33 -2.1 866,926 - MMP_RS04545 0.33 -0.5 866,938 - MMP_RS04545 0.35 +0.7 866,938 - MMP_RS04545 0.35 -0.7 866,938 - MMP_RS04545 0.35 +1.2 866,939 + MMP_RS04545 0.35 -0.8 866,939 + MMP_RS04545 0.35 +1.1 866,997 + MMP_RS04545 0.42 +0.6 866,997 + MMP_RS04545 0.42 +1.0 866,999 - MMP_RS04545 0.42 -0.8 867,000 + MMP_RS04545 0.42 +0.5 867,000 + MMP_RS04545 0.42 +0.5 867,000 + MMP_RS04545 0.42 +1.6 867,001 - MMP_RS04545 0.43 -1.0 867,001 - MMP_RS04545 0.43 +1.1 867,001 - MMP_RS04545 0.43 -0.6 867,001 - MMP_RS04545 0.43 -0.7 867,001 - MMP_RS04545 0.43 -1.8 867,002 + MMP_RS04545 0.43 +1.3 867,002 + MMP_RS04545 0.43 -0.1 867,002 + MMP_RS04545 0.43 +0.4 867,002 + MMP_RS04545 0.43 -1.4 867,002 + MMP_RS04545 0.43 -2.1 867,002 + MMP_RS04545 0.43 -0.2 867,002 + MMP_RS04545 0.43 +0.5 867,003 - MMP_RS04545 0.43 -0.6 867,003 - MMP_RS04545 0.43 +0.3 867,003 - MMP_RS04545 0.43 +0.6 867,004 + MMP_RS04545 0.43 -0.1 867,004 + MMP_RS04545 0.43 -1.2 867,004 + MMP_RS04545 0.43 -2.6 867,004 + MMP_RS04545 0.43 -0.8 867,036 - MMP_RS04545 0.47 -1.5 867,042 + MMP_RS04545 0.48 -0.9 867,061 - MMP_RS04545 0.50 +0.3 867,062 + MMP_RS04545 0.50 +0.7 867,062 + MMP_RS04545 0.50 -0.1 867,100 + MMP_RS04545 0.55 +0.8 867,100 + MMP_RS04545 0.55 +0.4 867,124 + MMP_RS04545 0.58 +0.4 867,137 - MMP_RS04545 0.60 -1.0 867,140 - MMP_RS04545 0.60 -1.5 867,141 + MMP_RS04545 0.60 +0.1 867,150 - MMP_RS04545 0.61 -1.0 867,150 - MMP_RS04545 0.61 +0.7 867,156 + MMP_RS04545 0.62 -2.3 867,180 - MMP_RS04545 0.65 -0.0 867,181 + MMP_RS04545 0.65 +0.9 867,181 + MMP_RS04545 0.65 -4.7 867,182 - MMP_RS04545 0.65 -0.2 867,182 - MMP_RS04545 0.65 +0.2 867,183 + MMP_RS04545 0.65 -1.5 867,186 - MMP_RS04545 0.66 -0.6 867,186 - MMP_RS04545 0.66 +1.4 867,186 - MMP_RS04545 0.66 -0.9 867,186 - MMP_RS04545 0.66 +2.5 867,187 + MMP_RS04545 0.66 -1.3 867,187 + MMP_RS04545 0.66 +0.9 867,187 + MMP_RS04545 0.66 -1.2 867,187 + MMP_RS04545 0.66 +1.1 867,261 + MMP_RS04545 0.75 -1.0 867,269 - MMP_RS04545 0.76 -3.2 867,326 - MMP_RS04545 0.83 +0.4 867,326 - MMP_RS04545 0.83 +1.3 867,326 - MMP_RS04545 0.83 -2.2 867,326 - MMP_RS04545 0.83 -0.8 867,364 - MMP_RS04545 0.88 +0.4 867,365 + MMP_RS04545 0.88 +1.4 867,555 + +1.2 867,555 + +1.0 867,568 - +0.5 867,684 - +1.2 867,733 - +2.7 867,733 - -0.8 867,733 - +0.3 867,734 + -0.6 867,734 + -0.0 867,737 - +0.1 867,738 + -0.8 867,738 + -1.9 867,743 - +0.0 867,743 - +0.2 867,744 + +0.1 867,744 + +0.2 867,747 - +1.1 867,748 + +1.6 867,879 + +1.4 867,897 + -1.3 867,897 + +0.9 867,909 + -0.0 867,919 - +0.5 867,923 + +1.7 868,014 - -0.9 868,014 - +0.1 868,057 - -0.8 868,057 - +1.1 868,067 + +0.8 868,146 - MMP_RS04550 0.15 -0.7 868,198 - MMP_RS04550 0.18 +0.8 868,218 - MMP_RS04550 0.19 -2.2 868,272 + MMP_RS04550 0.23 -0.3 868,272 + MMP_RS04550 0.23 -3.7 868,276 + MMP_RS04550 0.23 +0.1 868,276 + MMP_RS04550 0.23 +0.5 868,279 - MMP_RS04550 0.23 -1.3 868,280 + MMP_RS04550 0.23 -1.4 868,280 + MMP_RS04550 0.23 +0.1 868,303 - MMP_RS04550 0.24 +0.6
Or see this region's nucleotide sequence