Experiment: McCas_formate_complete potassium hexahydroxoantimonate 0.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS00120 and MMP_RS00125 are separated by 29 nucleotides MMP_RS00125 and MMP_RS00130 are separated by 91 nucleotides MMP_RS00130 and MMP_RS00135 are separated by 116 nucleotides MMP_RS00135 and MMP_RS00140 are separated by 4 nucleotides MMP_RS00140 and MMP_RS00145 overlap by 4 nucleotides
MMP_RS00120: MMP_RS00120 - LysR family transcriptional regulator, at 27,798 to 28,640
_RS00120
MMP_RS00125: MMP_RS00125 - DUF2798 domain-containing protein, at 28,670 to 28,897
_RS00125
MMP_RS00130: MMP_RS00130 - nickel-responsive transcriptional regulator NikR, at 28,989 to 29,414
_RS00130
MMP_RS00135: MMP_RS00135 - DUF2121 domain-containing protein, at 29,531 to 30,406
_RS00135
MMP_RS00140: MMP_RS00140 - DUF192 domain-containing protein, at 30,411 to 30,746
_RS00140
MMP_RS00145: MMP_RS00145 - ATP-dependent Clp protease proteolytic subunit, at 30,743 to 31,567
_RS00145
Position (kb) 29
30
31 Strain fitness (log2 ratio) -2
-1
0
1 at 28.609 kb on - strand at 28.657 kb on + strand at 28.659 kb on - strand at 28.660 kb on + strand at 28.683 kb on + strand at 28.829 kb on - strand, within MMP_RS00125 at 28.900 kb on + strand at 28.900 kb on + strand at 28.924 kb on - strand at 29.300 kb on - strand, within MMP_RS00130 at 29.390 kb on - strand at 29.390 kb on - strand at 29.390 kb on - strand at 29.417 kb on - strand at 29.417 kb on - strand at 29.418 kb on + strand at 29.453 kb on + strand at 29.459 kb on - strand at 29.516 kb on + strand at 29.746 kb on + strand, within MMP_RS00135 at 29.770 kb on + strand, within MMP_RS00135 at 29.770 kb on + strand, within MMP_RS00135 at 29.807 kb on - strand, within MMP_RS00135 at 29.807 kb on - strand, within MMP_RS00135 at 30.051 kb on + strand, within MMP_RS00135 at 30.051 kb on + strand, within MMP_RS00135 at 30.231 kb on - strand, within MMP_RS00135 at 30.253 kb on - strand, within MMP_RS00135 at 30.262 kb on + strand, within MMP_RS00135 at 30.262 kb on + strand, within MMP_RS00135 at 30.479 kb on - strand, within MMP_RS00140 at 30.489 kb on - strand, within MMP_RS00140 at 30.520 kb on + strand, within MMP_RS00140 at 30.534 kb on + strand, within MMP_RS00140 at 30.571 kb on + strand, within MMP_RS00140 at 30.703 kb on + strand, within MMP_RS00140 at 30.723 kb on - strand at 30.780 kb on - strand at 30.780 kb on - strand at 30.780 kb on - strand at 30.841 kb on - strand, within MMP_RS00145 at 30.890 kb on + strand, within MMP_RS00145 at 30.926 kb on + strand, within MMP_RS00145 at 31.128 kb on + strand, within MMP_RS00145 at 31.278 kb on + strand, within MMP_RS00145 at 31.319 kb on + strand, within MMP_RS00145 at 31.319 kb on + strand, within MMP_RS00145 at 31.337 kb on + strand, within MMP_RS00145 at 31.372 kb on - strand, within MMP_RS00145 at 31.377 kb on - strand, within MMP_RS00145 at 31.378 kb on + strand, within MMP_RS00145 at 31.378 kb on + strand, within MMP_RS00145 at 31.382 kb on + strand, within MMP_RS00145
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete potassium hexahydroxoantimonate 0.5 mM remove 28,609 - +0.0 28,657 + -0.3 28,659 - +0.6 28,660 + -0.2 28,683 + +0.4 28,829 - MMP_RS00125 0.70 -0.8 28,900 + +0.5 28,900 + +0.4 28,924 - -0.1 29,300 - MMP_RS00130 0.73 +0.5 29,390 - +0.4 29,390 - -0.0 29,390 - +0.5 29,417 - +0.9 29,417 - -0.2 29,418 + -0.5 29,453 + -0.4 29,459 - +0.0 29,516 + +0.2 29,746 + MMP_RS00135 0.25 -0.0 29,770 + MMP_RS00135 0.27 -1.0 29,770 + MMP_RS00135 0.27 +0.2 29,807 - MMP_RS00135 0.32 -0.0 29,807 - MMP_RS00135 0.32 -0.2 30,051 + MMP_RS00135 0.59 -0.7 30,051 + MMP_RS00135 0.59 -1.2 30,231 - MMP_RS00135 0.80 -0.1 30,253 - MMP_RS00135 0.82 +0.3 30,262 + MMP_RS00135 0.83 +0.2 30,262 + MMP_RS00135 0.83 -0.0 30,479 - MMP_RS00140 0.20 +0.4 30,489 - MMP_RS00140 0.23 +0.3 30,520 + MMP_RS00140 0.32 -0.1 30,534 + MMP_RS00140 0.37 +0.3 30,571 + MMP_RS00140 0.48 -0.9 30,703 + MMP_RS00140 0.87 +0.4 30,723 - +0.4 30,780 - +0.3 30,780 - +0.7 30,780 - +0.5 30,841 - MMP_RS00145 0.12 -0.4 30,890 + MMP_RS00145 0.18 +0.5 30,926 + MMP_RS00145 0.22 +0.5 31,128 + MMP_RS00145 0.47 -1.9 31,278 + MMP_RS00145 0.65 -0.6 31,319 + MMP_RS00145 0.70 -0.4 31,319 + MMP_RS00145 0.70 -0.5 31,337 + MMP_RS00145 0.72 +1.0 31,372 - MMP_RS00145 0.76 +0.6 31,377 - MMP_RS00145 0.77 -0.2 31,378 + MMP_RS00145 0.77 -1.1 31,378 + MMP_RS00145 0.77 -0.7 31,382 + MMP_RS00145 0.77 -1.3
Or see this region's nucleotide sequence