Strain Fitness in Methanococcus maripaludis S2 around MMP_RS06825

Experiment: McCas_formate_complete Rifampicin 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS06815 and MMP_RS06820 are separated by 57 nucleotidesMMP_RS06820 and MMP_RS06825 are separated by 56 nucleotidesMMP_RS06825 and MMP_RS06830 are separated by 20 nucleotidesMMP_RS06830 and MMP_RS06835 are separated by 13 nucleotidesMMP_RS06835 and MMP_RS06840 are separated by 38 nucleotides MMP_RS06815: MMP_RS06815 - 30S ribosomal protein S11, at 1,306,924 to 1,307,298 _RS06815 MMP_RS06820: MMP_RS06820 - DNA-directed RNA polymerase subunit D, at 1,307,356 to 1,307,898 _RS06820 MMP_RS06825: MMP_RS06825 - 50S ribosomal protein L18e, at 1,307,955 to 1,308,317 _RS06825 MMP_RS06830: MMP_RS06830 - 50S ribosomal protein L13, at 1,308,338 to 1,308,751 _RS06830 MMP_RS06835: MMP_RS06835 - 30S ribosomal protein S9, at 1,308,765 to 1,309,169 _RS06835 MMP_RS06840: MMP_RS06840 - DNA-directed RNA polymerase subunit N, at 1,309,208 to 1,309,414 _RS06840 Position (kb) 1307 1308 1309Strain fitness (log2 ratio) -3 -2 -1 0 1at 1307.432 kb on + strandat 1309.168 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction McCas_formate_complete Rifampicin 0.5 mM
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1,307,432 + -1.2
1,309,168 + -3.1

Or see this region's nucleotide sequence