Strain Fitness in Methanococcus maripaludis S2 around MMP_RS03585

Experiment: McCas_formate_complete Rifampicin 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS03580 and MMP_RS03585 are separated by 163 nucleotidesMMP_RS03585 and MMP_RS03590 are separated by 121 nucleotides MMP_RS03580: MMP_RS03580 - signal recognition particle-docking protein FtsY, at 671,197 to 672,348 _RS03580 MMP_RS03585: MMP_RS03585 - Hsp20/alpha crystallin family protein, at 672,512 to 672,976 _RS03585 MMP_RS03590: MMP_RS03590 - METTL5 family protein, at 673,098 to 673,739 _RS03590 Position (kb) 672 673Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 671.521 kb on - strand, within MMP_RS03580at 671.606 kb on - strand, within MMP_RS03580at 671.754 kb on - strand, within MMP_RS03580at 671.960 kb on + strand, within MMP_RS03580at 672.061 kb on + strand, within MMP_RS03580at 672.382 kb on - strandat 672.392 kb on + strandat 672.412 kb on - strandat 672.416 kb on + strandat 672.422 kb on + strandat 672.425 kb on - strandat 672.425 kb on - strandat 672.434 kb on - strandat 672.507 kb on + strandat 672.507 kb on + strandat 672.666 kb on - strand, within MMP_RS03585at 672.848 kb on - strand, within MMP_RS03585at 673.000 kb on - strandat 673.028 kb on + strandat 673.050 kb on - strandat 673.052 kb on - strandat 673.096 kb on - strandat 673.274 kb on - strand, within MMP_RS03590at 673.275 kb on + strand, within MMP_RS03590at 673.275 kb on + strand, within MMP_RS03590at 673.277 kb on + strand, within MMP_RS03590at 673.580 kb on + strand, within MMP_RS03590at 673.615 kb on + strand, within MMP_RS03590at 673.648 kb on - strand, within MMP_RS03590at 673.793 kb on - strandat 673.796 kb on + strandat 673.799 kb on - strandat 673.799 kb on - strandat 673.897 kb on + strandat 673.976 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction McCas_formate_complete Rifampicin 0.5 mM
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671,521 - MMP_RS03580 0.28 -3.4
671,606 - MMP_RS03580 0.36 -2.6
671,754 - MMP_RS03580 0.48 -4.5
671,960 + MMP_RS03580 0.66 -3.8
672,061 + MMP_RS03580 0.75 -4.4
672,382 - -1.0
672,392 + -4.0
672,412 - +0.5
672,416 + +0.4
672,422 + +1.3
672,425 - +1.4
672,425 - +0.2
672,434 - -0.9
672,507 + -2.4
672,507 + -2.1
672,666 - MMP_RS03585 0.33 -2.1
672,848 - MMP_RS03585 0.72 -2.1
673,000 - +0.4
673,028 + -3.3
673,050 - -1.7
673,052 - +0.5
673,096 - +0.8
673,274 - MMP_RS03590 0.27 -4.8
673,275 + MMP_RS03590 0.28 -0.4
673,275 + MMP_RS03590 0.28 -1.1
673,277 + MMP_RS03590 0.28 -0.9
673,580 + MMP_RS03590 0.75 -0.8
673,615 + MMP_RS03590 0.81 +0.1
673,648 - MMP_RS03590 0.86 -2.3
673,793 - -1.2
673,796 + -3.0
673,799 - -2.8
673,799 - -2.1
673,897 + -2.4
673,976 + -1.0

Or see this region's nucleotide sequence