Strain Fitness in Methanococcus maripaludis S2 around MMP_RS02180

Experiment: McCas_formate_complete Rifampicin 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS02175 and MMP_RS02180 are separated by 19 nucleotidesMMP_RS02180 and MMP_RS02185 are separated by 131 nucleotides MMP_RS02175: MMP_RS02175 - DUF1611 domain-containing protein, at 406,701 to 407,621 _RS02175 MMP_RS02180: MMP_RS02180 - GMC oxidoreductase, at 407,641 to 408,801 _RS02180 MMP_RS02185: MMP_RS02185 - ribose-phosphate diphosphokinase, at 408,933 to 409,796 _RS02185 Position (kb) 407 408 409Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 406.770 kb on + strandat 406.772 kb on + strandat 406.772 kb on + strandat 407.408 kb on + strand, within MMP_RS02175at 407.638 kb on + strandat 407.741 kb on - strandat 407.741 kb on - strandat 407.838 kb on - strandat 407.989 kb on - strandat 407.989 kb on - strandat 407.990 kb on + strandat 408.030 kb on - strandat 408.037 kb on - strandat 408.184 kb on + strandat 408.218 kb on + strandat 408.233 kb on + strandat 408.556 kb on - strandat 408.557 kb on + strandat 408.683 kb on - strandat 408.683 kb on - strandat 408.684 kb on + strandat 408.684 kb on + strandat 408.715 kb on - strandat 408.715 kb on - strandat 408.718 kb on + strandat 408.750 kb on - strandat 408.784 kb on - strandat 408.832 kb on + strandat 408.887 kb on - strandat 409.043 kb on + strandat 409.045 kb on + strandat 409.088 kb on + strandat 409.769 kb on + strandat 409.798 kb on - strandat 409.798 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction McCas_formate_complete Rifampicin 0.5 mM
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406,770 + -2.5
406,772 + +0.4
406,772 + -1.0
407,408 + MMP_RS02175 0.77 -1.4
407,638 + -0.3
407,741 - -3.2
407,741 - -2.3
407,838 - -2.8
407,989 - -3.9
407,989 - -4.3
407,990 + -3.9
408,030 - -2.4
408,037 - -3.8
408,184 + -3.0
408,218 + -4.7
408,233 + -3.6
408,556 - -4.6
408,557 + -4.2
408,683 - -3.8
408,683 - -3.7
408,684 + -1.7
408,684 + -4.1
408,715 - -3.3
408,715 - -2.0
408,718 + -5.4
408,750 - -4.3
408,784 - -3.3
408,832 + -3.2
408,887 - -2.7
409,043 + -3.6
409,045 + -2.6
409,088 + -3.0
409,769 + -1.6
409,798 - -3.0
409,798 - -4.0

Or see this region's nucleotide sequence